LOCUS       XM_006237758            1220 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus COP9 signalosome subunit 5 (Cops5),
            transcript variant X1, mRNA.
ACCESSION   XM_006237758
VERSION     XM_006237758.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006237758.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006237758.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1220
                     /gene="Cops5"
                     /note="COP9 signalosome subunit 5; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 21
                     ESTs, 3 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 130 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:312916"
                     /db_xref="RGD:1310301"
     CDS             117..1070
                     /gene="Cops5"
                     /codon_start=1
                     /product="COP9 signalosome complex subunit 5 isoform X1"
                     /protein_id="XP_006237820.1"
                     /db_xref="GeneID:312916"
                     /db_xref="RGD:1310301"
                     /translation="MSLRRRRAPTREWSGPTSPPVSSVMAALRVYHHYFKYCKISALA
                     LLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAA
                     YIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTIS
                     AGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDR
                     KLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHD
                     RKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINVA"
ORIGIN      
        1 cagagacttt gcgtccctcc cagttcacac gtacggattt cagagccagc atgtcctcgt
       61 ttcgttcgca aaactattat tagccgagcc gagcggaccc ctaggaagtg ttttctatgt
      121 cgctacgccg ccgccgcgcc ccgacgcgcg aatggtctgg accaacgtca cctccggtct
      181 caagtgtcat ggctgccttg agagtctatc accactactt taaatactgc aaaatctctg
      241 cgttggcact gctgaaaatg gtgatgcatg ccaggtcagg aggcaacctg gaggtgatgg
      301 gtttgatgct cgggaaagtg gatggagaga ccatgatcat catggacagc tttgctttgc
      361 ctgtagaggg cactgaaacc cgagtaaatg cccaggctgc tgcatacgag tacatggctg
      421 catacataga aaatgccaaa caggttggcc gccttgagaa tgcaattggt tggtatcaca
      481 gccaccctgg ttatggctgc tggctctccg gaattgatgt tagtacacag atgcttaacc
      541 agcagtttca ggaaccattt gtagcagtgg tgattgaccc aaccagaaca atatctgcag
      601 ggaaggtgaa tcttggcgcc tttaggacat atccaaaggg ctataagcct cctgatgaag
      661 gaccttcaga gtaccagact atcccactca ataaaataga agattttggc gtgcactgca
      721 aacaatatta tgccttagaa gtctcatatt tcaaatcctc tttggatcgt aaactacttg
      781 agctcttgtg gaataaatac tgggtgaaca ccctgagttc ctctagcttg cttaccaatg
      841 ctgactatac cacaggccag gtgtttgatc tgtctgagaa gttagagcag tcggaagccc
      901 agctggggcg tgggagtttc atgttgggtt tagaaacaca tgaccgcaag tcagaagaca
      961 aacttgccaa agctacgaga gacagctgta aaaccaccat agaagccatc catggactga
     1021 tgtctcaggt tattaaggat aaactgttta atcaaattaa cgttgcttag ttactgctga
     1081 gtactcttcc tcagagctgg cgtgcggaag gagaagaagc tcaaggaaca ttctaaccca
     1141 gttaccagaa ctcagataga agactaaggt gctgtgtgac gtcctgagta ttagcactgt
     1201 aataaaactg tcacatgaaa
//
