LOCUS       NM_001106929            3154 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus COPI coat complex subunit gamma 2 (Copg2), mRNA.
ACCESSION   NM_001106929 XM_001065495 XM_217496
VERSION     NM_001106929.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Kuliyev,E., Gingras,S., Guy,C.S., Howell,S., Vogel,P. and
            Pelletier,S.
  TITLE     Overlapping Role of SCYL1 and SCYL3 in Maintaining Motor Neuron
            Viability
  JOURNAL   J Neurosci 38 (10), 2615-2630 (2018)
   PUBMED   29437892
REFERENCE   2  (bases 1 to 3154)
  AUTHORS   Peter,C.J., Evans,M., Thayanithy,V., Taniguchi-Ishigaki,N.,
            Bach,I., Kolpak,A., Bassell,G.J., Rossoll,W., Lorson,C.L., Bao,Z.Z.
            and Androphy,E.J.
  TITLE     The COPI vesicle complex binds and moves with survival motor neuron
            within axons
  JOURNAL   Hum Mol Genet 20 (9), 1701-1711 (2011)
   PUBMED   21300694
REFERENCE   3  (bases 1 to 3154)
  AUTHORS   Cao,Z., Li,C., Higginbotham,J.N., Franklin,J.L., Tabb,D.L.,
            Graves-Deal,R., Hill,S., Cheek,K., Jerome,W.G., Lapierre,L.A.,
            Goldenring,J.R., Ham,A.J. and Coffey,R.J.
  TITLE     Use of fluorescence-activated vesicle sorting for isolation of
            Naked2-associated, basolaterally targeted exocytic vesicles for
            proteomics analysis
  JOURNAL   Mol Cell Proteomics 7 (9), 1651-1667 (2008)
   PUBMED   18504258
REFERENCE   4  (bases 1 to 3154)
  AUTHORS   Wegmann,D., Hess,P., Baier,C., Wieland,F.T. and Reinhard,C.
  TITLE     Novel isotypic gamma/zeta subunits reveal three coatomer complexes
            in mammals
  JOURNAL   Mol Cell Biol 24 (3), 1070-1080 (2004)
   PUBMED   14729954
REFERENCE   5  (bases 1 to 3154)
  AUTHORS   Futatsumori,M., Kasai,K., Takatsu,H., Shin,H.W. and Nakayama,K.
  TITLE     Identification and characterization of novel isoforms of COP I
            subunits
  JOURNAL   J Biochem 128 (5), 793-801 (2000)
   PUBMED   11056392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1, FM104860.1, FN805880.1, FM091200.1, FN804600.1,
            FM099334.1, FM088672.1, FM120771.1, FM100327.1 and FM088301.1.
            
            On Feb 7, 2013 this sequence version replaced NM_001106929.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1417830.1,
                                           SRR26360190.2314834.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-64                JAXUCZ010000004.1  60468890-60468953   c
            65-734              FM104860.1         1-670
            735-880             FN805880.1         515-660
            881-1134            FM091200.1         312-565
            1135-1487           FN804600.1         64-416
            1488-1777           FM099334.1         148-437
            1778-2089           FM088672.1         244-555
            2090-2411           FM120771.1         322-643
            2412-2496           FM100327.1         336-420
            2497-2681           FM088301.1         421-605
            2682-3154           JAXUCZ010000004.1  60333455-60333927   c
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..3154
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /note="COPI coat complex subunit gamma 2"
                     /db_xref="GeneID:301742"
                     /db_xref="RGD:1566215"
     exon            1..136
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..2715
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /note="gamma-2-COP; gamma-2-coat protein; coatomer protein
                     complex, subunit gamma 2"
                     /codon_start=1
                     /product="coatomer subunit gamma-2"
                     /protein_id="NP_001100399.1"
                     /db_xref="GeneID:301742"
                     /db_xref="RGD:1566215"
                     /translation="MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRC
                     LHILTKILYLLNQGEHFGTMEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDV
                     IIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSAL
                     VSSLHMMKISYDVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKF
                     TKSGLKSQFAYCMLIRIASRLLKESEDGHESPLFDFIESCLRNKHEMVIYEAASAIIH
                     LPNCTARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLIT
                     DSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPR
                     KHSVMMTFLSNMLRDDGGFEYKKAIVDCIISIVEENPESKEAGLAHLCEFIEDCEHTV
                     LATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESLLPS
                     ILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSIPGMEKALHQYT
                     LEPSEKPFDMKSIPLAMAPVFEQKSEITLVTPKPEKLAPSRQDIFQEQLAAIPEFVNL
                     GPLFKSSEPVQLTEAETEYFVRCVKHMFTDHIVFQFDCTNTLNDQLLEKVTVQMEPSD
                     SYEVLCCVPAPSLPYNQPGICYTLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPD
                     EDGYDDEYVLEDLEVTVSDHIQKILKPNFAAAWEEVGDAFEKEETFALSSTKTLEDAV
                     NNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALADGVTMQVTVR
                     SREKTPVDVILASVG"
     exon            137..189
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            190..270
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            271..342
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            343..422
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            423..498
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            499..591
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            592..678
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            679..836
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            837..970
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1038
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1227
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1323
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1567
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            1568..1643
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..1747
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            1748..1873
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            1874..1936
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            1937..2076
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            2077..2248
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            2249..2346
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            2347..2485
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            2486..2584
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
     exon            2585..3154
                     /gene="Copg2"
                     /gene_synonym="RGD1566215"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgagaacac agggcctgcc ttcctgcagc gtcttccgct cgccggctgc ggcgcctggg
       61 acggttgcgg tgggtctggg cgctgggaag ccgtccaaga tgattaaaaa attcgacaag
      121 aaggacgagg agtctggtag tggttccaat cctttccagc atttggagaa gagtgctgtc
      181 ttgcaggagg cacgcatatt taacgaaacg cccatcaatc caagaagatg cttgcatatc
      241 ttgacaaaga ttctttactt actcaaccag ggtgaacact tcggaactat ggaagctaca
      301 gaagccttct ttgcaatgac tcgattgttt caatctaatg atcaaacatt gaggagaatg
      361 tgctacctta ccatcaagga aatggccact atctctgagg atgtgatcat tgtcacaagc
      421 agtctgacca aggacatgac tggaaaggaa gacgtgtacc gaggcccagc catcagggct
      481 ctctgcagaa tcacggatgg aacaatgttg caagctattg aaagatacat gaagcaggcc
      541 attgtggata aagtttccag tgtatccagt tcagcactgg tctcttcctt acatatgatg
      601 aagataagct atgatgtggt taaacgatgg ataaatgaag cccaagaagc tgcatcaagt
      661 gacaatatca tggtgcagta ccatgcattg ggagtgctct atcacctccg gaagaatgat
      721 cggcttgctg tctccaagat gctaaataag tttaccaagt ctggtctcaa atcacagttt
      781 gcatactgta tgctgattcg gattgctagt cgcttactga aagaaagcga ggatggtcat
      841 gaaagtccac tctttgattt cattgagagc tgcttgcgaa ataaacatga aatggttatc
      901 tatgaagctg cttctgccat tattcatctt cctaactgta ctgcaagaga gctggcacct
      961 gctgtctcag ttcttcaact tttctgtagc tctcctaaac cagccttgag atatgcagct
     1021 gtgaggaccc tgaacaaggt ggcaatgaag cacccctctg ctgtaactgc ctgtaatctg
     1081 gatttagaaa acttaatcac agactcaaac agaagcattg ctaccctggc cattacaaca
     1141 ttgctcaaaa caggaagtga gagcagtgtg gacaggctta tgaagcagat ctcttctttt
     1201 gtgtctgaaa tctcagatga gttcaaggtg gttgttgtac aggcaatcag tgctctgtgt
     1261 cagaagtacc ctcggaagca cagcgttatg atgacttttc tttccaacat gcttcgagat
     1321 gatggaggtt ttgaatacaa aaaggccatt gtggactgca taatcagcat tgtggaagag
     1381 aaccctgaga gtaaagaagc tggtctagcc cacctctgtg aattcattga ggactgtgaa
     1441 cacaccgttc tggctactaa aattctccac ttattgggca aagagggccc tagaactcct
     1501 gttccctcca agtatatcag attcattttt aatagggtag tcctggagaa tgaggctgtc
     1561 agagctgctg ctgtgagtgc tttggctaaa tttggggctc agaatgagag ccttctccca
     1621 agtatccttg tactcttaca aaggtgtatg atggatactg atgacgaggt acgggaccga
     1681 gctaccttct acctgaatgt gctacagcag agacagatgg ccctgaatgc tacatatatc
     1741 ttcaatggtc tgacagtctc tataccaggg atggaaaagg ccttacacca atacacattg
     1801 gagccttcag aaaaaccctt tgatatgaag tcaattcctc ttgctatggc tcctgtcttt
     1861 gaacagaagt cagagatcac acttgtgact cctaagccag agaagttggc tccttccagg
     1921 caagacattt tccaagaaca gttggctgcc attcctgagt ttgtgaacct ggggcccttg
     1981 ttcaagtctt ctgagcctgt gcagctgaca gaagcagaga cagagtattt cgttcgctgt
     2041 gtgaagcaca tgttcactga ccacattgta ttccagtttg actgtaccaa cactctgaat
     2101 gaccagctgc tggagaaagt aactgtgcag atggaaccat ccgattccta tgaagtgctg
     2161 tgctgtgtcc cagctcccag ccttccttac aatcaaccag gaatatgcta cacacttgtt
     2221 cgcttgccag atgaggaccc tacagcagtt gcaggcacct ttagctgtac catgaagttt
     2281 acagtccggg actgtgaccc taatactgga gttccagatg aagatggata tgatgatgag
     2341 tatgtgctgg aagatcttga agtgactgtg tctgaccaca ttcagaagat actaaaacct
     2401 aactttgctg ctgcctggga agaggtggga gatgcctttg agaaagaaga gacctttgcc
     2461 ctgagctcta caaaaaccct tgaagacgct gtcaacaaca tcatcacgtt tctcggcatg
     2521 cagccatgtg agagatcaga taaagtaccc gagaataaga attcccattc cctctatcta
     2581 gcaggagttt acagaggtgg ctatgactta ctggtgcggt ccaggctggc cctagcagat
     2641 ggcgtgacca tgcaggtgac tgtgagaagc agagagaaaa cacctgtgga tgttatcttg
     2701 gcttctgtgg gataagttct tgctgggaag ggtgatgttg ctgtgccctc cctattggtg
     2761 gtttttaggc tagtgacaca aacttcccag aattacacta aagattcata atgactttga
     2821 agaagcaaat ccagtgtttg gccctgagcc agcagatcaa acaaatgtct gtctttgcgc
     2881 atggacttta gtgtttcttc cctcctcatt gtcttactca ttcagccttg gtaggacagt
     2941 gcagctttga gtgggcttgg taatcagatt ctacttacgc tattctacaa ctgcttagct
     3001 tcattatatg ctgttactta atgtgtgaaa actcttggca acggtggaaa agtttatccc
     3061 agaagggtgg atggggaggg gaagccggaa tccatttttg tcacagtttg tttttattaa
     3121 tagaaaataa acactcattc attccagttt caaa
//
