LOCUS       NM_001031822            4045 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus COPI coat complex subunit gamma 1 (Copg1), mRNA.
ACCESSION   NM_001031822
VERSION     NM_001031822.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4045)
  AUTHORS   Kuliyev,E., Gingras,S., Guy,C.S., Howell,S., Vogel,P. and
            Pelletier,S.
  TITLE     Overlapping Role of SCYL1 and SCYL3 in Maintaining Motor Neuron
            Viability
  JOURNAL   J Neurosci 38 (10), 2615-2630 (2018)
   PUBMED   29437892
REFERENCE   2  (bases 1 to 4045)
  AUTHORS   Hehnly,H., Xu,W., Chen,J.L. and Stamnes,M.
  TITLE     Cdc42 regulates microtubule-dependent Golgi positioning
  JOURNAL   Traffic 11 (8), 1067-1078 (2010)
   PUBMED   20525016
REFERENCE   3  (bases 1 to 4045)
  AUTHORS   Cao,Z., Li,C., Higginbotham,J.N., Franklin,J.L., Tabb,D.L.,
            Graves-Deal,R., Hill,S., Cheek,K., Jerome,W.G., Lapierre,L.A.,
            Goldenring,J.R., Ham,A.J. and Coffey,R.J.
  TITLE     Use of fluorescence-activated vesicle sorting for isolation of
            Naked2-associated, basolaterally targeted exocytic vesicles for
            proteomics analysis
  JOURNAL   Mol Cell Proteomics 7 (9), 1651-1667 (2008)
   PUBMED   18504258
REFERENCE   4  (bases 1 to 4045)
  AUTHORS   Moelleken,J., Malsam,J., Betts,M.J., Movafeghi,A., Reckmann,I.,
            Meissner,I., Hellwig,A., Russell,R.B., Sollner,T., Brugger,B. and
            Wieland,F.T.
  TITLE     Differential localization of coatomer complex isoforms within the
            Golgi apparatus
  JOURNAL   Proc Natl Acad Sci U S A 104 (11), 4425-4430 (2007)
   PUBMED   17360540
  REMARK    GeneRIF: analysis of differential localization of coatomer complex
            isoforms within the Golgi apparatus
REFERENCE   5  (bases 1 to 4045)
  AUTHORS   Tsuji,A.B., Sugyo,A., Ogiu,T., Sagara,M., Kimura,T., Ishikawa,A.,
            Sudo,H., Ohtsuki,M., Aburatani,H., Imai,T. and Harada,Y.N.
  TITLE     Fine mapping of radiation susceptibility and gene expression
            analysis of LEC congenic rat lines
  JOURNAL   Genomics 86 (3), 271-279 (2005)
   PUBMED   15978772
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Oct 6, 2022 this sequence version replaced NM_001031822.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC129074.1, SRR26643296.13647.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-143               JAXUCZ010000004.1  121923962-121924104
            144-196             JAXUCZ010000004.1  121925119-121925171
            197-277             JAXUCZ010000004.1  121925509-121925589
            278-349             JAXUCZ010000004.1  121925797-121925868
            350-429             JAXUCZ010000004.1  121926021-121926100
            430-505             JAXUCZ010000004.1  121928457-121928532
            506-598             JAXUCZ010000004.1  121928712-121928804
            599-685             JAXUCZ010000004.1  121929125-121929211
            686-843             JAXUCZ010000004.1  121930285-121930442
            844-977             JAXUCZ010000004.1  121930529-121930662
            978-1045            JAXUCZ010000004.1  121932428-121932495
            1046-1234           JAXUCZ010000004.1  121932659-121932847
            1235-1330           JAXUCZ010000004.1  121934976-121935071
            1331-1574           JAXUCZ010000004.1  121939163-121939406
            1575-1650           JAXUCZ010000004.1  121940371-121940446
            1651-1754           JAXUCZ010000004.1  121941014-121941117
            1755-1880           JAXUCZ010000004.1  121941762-121941887
            1881-1949           JAXUCZ010000004.1  121942158-121942226
            1950-2092           JAXUCZ010000004.1  121944026-121944168
            2093-2264           JAXUCZ010000004.1  121944427-121944598
            2265-2362           JAXUCZ010000004.1  121945169-121945266
            2363-2501           JAXUCZ010000004.1  121946310-121946448
            2502-2600           JAXUCZ010000004.1  121946711-121946809
            2601-4045           JAXUCZ010000004.1  121948375-121949819
FEATURES             Location/Qualifiers
     source          1..4045
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..4045
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /note="COPI coat complex subunit gamma 1"
                     /db_xref="GeneID:297428"
                     /db_xref="RGD:1565292"
     exon            1..143
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     CDS             107..2731
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /note="coatomer subunit gamma; gamma-COP; gamma-coat
                     protein; gamma-1-COP; gamma-1-coat protein; coatomer
                     protein complex, subunit gamma 1"
                     /codon_start=1
                     /product="coatomer subunit gamma-1"
                     /protein_id="NP_001026992.1"
                     /db_xref="GeneID:297428"
                     /db_xref="RGD:1565292"
                     /translation="MLKKFDKKDEESGGGSNPLQHLEKSAVLQEARVFNETPINPRKC
                     AHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV
                     IIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAVERYMKQAIVDKVPSVSSSAL
                     VSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKF
                     TRHGLKSPFAYCMMIRVASKQLEEEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVN
                     LPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVT
                     DSNRSIATLAITTLLKTGSESSIDRLMKQISSFMSEISDEFKVVVVQAISALCQKYPR
                     KHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENSESKETGLSHLCEFIEDCEFTV
                     LATRILHLLGQEGPKTNNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEEMLPS
                     ILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLEKALQQYT
                     LEPSEKPFDLKSVPLATTPMTEQRPESTSTAAVKQPEKVAATRQEIFQEQLAAVPEFQ
                     GLGPLFKSSPEPVALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQME
                     PTEAYEVLSYVPVRSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPNTG
                     EIDEEGYEDEYVLEDLEVTVADHIQKVMKVNFEAAWDEVGDEFEKEETFTLSTIKTLE
                     EAVGNIVKFLGMHPCERSDKVPENKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQV
                     TARSSEELPVDIILASVG"
     exon            144..196
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            197..277
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            278..349
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            350..429
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            430..505
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            506..598
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            599..685
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            686..843
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            844..977
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1045
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..1234
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..1330
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            1331..1574
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1650
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            1651..1754
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            1755..1880
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            1881..1949
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            1950..2092
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            2093..2264
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            2265..2362
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            2363..2501
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            2502..2600
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
     exon            2601..4045
                     /gene="Copg1"
                     /gene_synonym="Copg"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgctcagg gcgacgtggc gggcgggagt acggaagccg ctgggagaaa ttgatctcac
       61 cgctaccctg agcatctttc tattgcgtgg agctaccgct ggcaccatgt tgaagaaatt
      121 cgacaagaag gacgaggagt ctggtggagg ttccaacccc ctccagcacc tggagaagag
      181 tgcagtactc caagaggctc gggtctttaa cgaaactcct atcaaccccc ggaaatgtgc
      241 ccacatcctc accaagatcc tttacctcat aaaccagggg gagcacctgg ggaccacaga
      301 agcaactgag gctttctttg ccatgaccaa gctctttcag tccaatgatc ccacactccg
      361 ccgaatgtgc tacttgacca tcaaggagat gtcctgcatc gctgaggatg tcatcattgt
      421 gacgagcagc ctgacaaaag acatgactgg gaaagaggat aattaccgtg gtcctgctgt
      481 ccgtgccctc tgccagatca ctgatagcac catgctgcag gccgttgagc gctacatgaa
      541 acaagcgatt gtggacaagg tgcccagtgt ctccagctcc gccctcgtgt cttccctgca
      601 cctgctgaaa tgcagcttcg atgtggtcaa gcgctgggtg aacgaggccc aggaagcggc
      661 atccagtgat aacatcatgg tgcagtacca tgccctggga cttctgtacc atgtgcggaa
      721 gaatgaccgc ctggctgtga gtaagatgat cagtaagttc acccggcacg gcctgaagtc
      781 ccccttcgcc tactgcatga tgatccgagt ggccagcaag caactagaag aagaagacgg
      841 aagccgtgac agcccgctgt ttgacttcat tgagagctgc ctgcgtaaca agcatgagat
      901 ggtggtgtat gaagctgcct cagccattgt caacctgcca ggctgcagtg ccaaagagct
      961 ggctcctgcc gtgtcagtgc tccagctttt ctgtagctct cccaaggctg ctcttcgcta
     1021 tgctgctgtg cgcactctca ataaggtggc catgaagcac ccatcagccg tgactgcctg
     1081 caatctagat ctggaaaacc tggtcacaga ctcgaaccgt agcatcgcca ctttggccat
     1141 caccacactc ctcaagacag ggagcgagag cagcattgac cgccttatga agcagatttc
     1201 ttccttcatg tcggagatct cagatgagtt caaggtggtg gttgtccagg ccatcagcgc
     1261 cctgtgccag aagtatcccc gaaagcatgc tgtgctcatg aacttcctgt tcaccatgct
     1321 acgggaagag ggtggctttg agtacaagcg tgccatcgtg gactgcatca tcagcatcat
     1381 tgaggagaac tcagagagca aggagacagg gttgtcacac ctgtgcgagt tcatcgagga
     1441 ctgcgagttc actgtgctgg ccacccgcat cctgcacctg ttgggccagg aggggcccaa
     1501 gaccaacaac ccctccaagt acattcgctt tatctacaac cgtgtggtct tggagcacga
     1561 agaggttcgg gcaggtgcag tgagtgctct ggccaagttt ggagcccaga acgaagagat
     1621 gctgcccagc atcttggtgt tgctgaagag gtgtgtgatg gacgacgaca atgaagtgag
     1681 agacagagcc accttctatc tgaacgttct agagcagaag cagaaggctc tcaatgcagg
     1741 ttacatccta aacggtctga ccgtgtccat ccctggactg gagaaagccc tacagcagta
     1801 tacactagaa ccatcagaaa agccatttga cctcaagtct gtgcctctgg ccaccacacc
     1861 tatgacagag cagagaccag aaagcacctc cactgcagca gtcaaacagc cagagaaggt
     1921 ggcagccaca cggcaggaga tattccagga gcagttagca gcggtgccag agttccaggg
     1981 gctagggccc ctcttcaagt cctctcctga gccggtggcc ctcaccgagt cagagaccga
     2041 gtatgtcatc cgttgcacca aacacacctt ctctgaccac ttggtgttcc agtttgactg
     2101 cacaaacacc ctcaatgacc agactctgga gaatgtcaca gtgcaaatgg aacccactga
     2161 ggcatatgaa gtgctctctt atgtgcctgt gcgaagcttg ccctacaacc agcctgggac
     2221 ctgctacaca ctagtggctc tgcccaagga agaccccaca gctgtggcat gcacattcag
     2281 ctgtgtgatg aagttcactg ttaaggactg tgaccccaac actggagaaa tcgatgaaga
     2341 aggctatgag gatgagtatg tgctggagga tctagaagtt actgtagctg atcacatcca
     2401 gaaagtcatg aaagtgaact ttgaagcagc ctgggatgag gtgggagatg agtttgagaa
     2461 ggaggaaaca ttcaccctgt ctactatcaa aacacttgaa gaggctgtgg gcaatattgt
     2521 gaagtttttg ggaatgcatc cttgtgaaag gtcagacaaa gtgccagaaa acaagaacac
     2581 tcacacgctg ctgctagctg gagtgttccg gggtggtcat gacatccttg tgcgttcccg
     2641 gcttctgctt ttggacacag tgacaatgca ggtgacagcc agaagctcag aggagctgcc
     2701 agtagatatc atcttggcgt ctgtgggcta aagttccggc ctaagcccta ctgtcttgcc
     2761 caacactacg ctgatgccac ttcttccctg tgaagccggt ggaaaccctt ccccagacct
     2821 ctgtttggaa acaatcaaga atcaatacag attttttttt aaattccatc ctatcattca
     2881 ggaatgctag ggtagatttt gtcaccttgc cttcaaggag acgtcacaaa tgaataaaat
     2941 gttcagattt tctcgaatac tgatacccaa agaagccgtc tcatccgtat agtaagacag
     3001 catgtatttc tcgagtaata gctgcttctg caggctcgcg cttagggccg tcacttttcc
     3061 tggaggcctc cttcaccaaa tggagtagtg cagttctcct ggggactgtg tcagtgccaa
     3121 gcttaggatg ggtctaaagg ctagccgagt gacaatagct ggcaggtctg ataagccatt
     3181 catcctcggg catttataga tggatgggtc tccaaagggc taaggtcctt cacctgggtg
     3241 ttacctgatc agctctggat tagagggtgt catggctttc tgctctgggt ctgtgagtgg
     3301 gaagaacagt atctgcattc cctttgggaa tcctatggta tgtctcagtg cttgggcttt
     3361 aaactcaaat caggtggttt taaactgttg gaaacacctc aaggactgga cccctgatgg
     3421 ggcttctgag atgggtcagc aggtaaaggt acctaccaag atggactacc cactcggtag
     3481 gagagaaccg gttttcagta gttgccccct gacctcgtgc acacctgtat actgtatgcc
     3541 catgcacata cacaggtacg cgttagaaca ggggactgac cccggaggcc gattcccata
     3601 acctgaagag atgaggctac gcttgagcat agttaagctg tctttgctaa ggcccatttc
     3661 atgatttatg gtcctggctc ctccatgtgc ttggtcatgc ctgctgtgtt gaactaagtc
     3721 acgtgatatt aaatttccta acaggatata aagagtcaga tttttcattt ggggagtttt
     3781 ctcaggtagg tgacctgaag gctgctccct aaagacattt ctctgccccc caccttccat
     3841 ccctctcctg gggtttggaa cagctgctct tgcctggcct ctctccctcg ttcctcttta
     3901 caggaaaaag cctgtctgtc cttcaaggcc acatcctgct tagaccttca tgattgtatt
     3961 ctttctgcct aatacccccc actctactcc caggcctggt catagcctgg aagccattcc
     4021 attcaaataa acttcactaa aaaaa
//
