LOCUS       NM_001399438            1054 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus COPI coat complex subunit epsilon (Cope), mRNA.
ACCESSION   NM_001399438 XM_006252876
VERSION     NM_001399438.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Peter,C.J., Evans,M., Thayanithy,V., Taniguchi-Ishigaki,N.,
            Bach,I., Kolpak,A., Bassell,G.J., Rossoll,W., Lorson,C.L., Bao,Z.Z.
            and Androphy,E.J.
  TITLE     The COPI vesicle complex binds and moves with survival motor neuron
            within axons
  JOURNAL   Hum Mol Genet 20 (9), 1701-1711 (2011)
   PUBMED   21300694
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Nichols,R.J. and Traktman,P.
  TITLE     Characterization of three paralogous members of the Mammalian
            vaccinia related kinase family
  JOURNAL   J Biol Chem 279 (9), 7934-7946 (2004)
   PUBMED   14645249
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Jan 7, 2022 this sequence version replaced XM_006252876.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ220757.1, FQ232202.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760475,
                                           SAMEA5760476 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-169               JAXUCZ010000016.1  19158869-19159037   c
            170-232             JAXUCZ010000016.1  19156297-19156359   c
            233-333             JAXUCZ010000016.1  19155232-19155332   c
            334-486             JAXUCZ010000016.1  19154327-19154479   c
            487-540             JAXUCZ010000016.1  19152649-19152702   c
            541-622             JAXUCZ010000016.1  19152068-19152149   c
            623-778             JAXUCZ010000016.1  19150407-19150562   c
            779-847             JAXUCZ010000016.1  19149799-19149867   c
            848-922             JAXUCZ010000016.1  19149041-19149115   c
            923-1054            JAXUCZ010000016.1  19148832-19148963   c
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..1054
                     /gene="Cope"
                     /note="COPI coat complex subunit epsilon"
                     /db_xref="GeneID:290659"
                     /db_xref="RGD:1306785"
     exon            1..169
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..970
                     /gene="Cope"
                     /note="coatomer protein complex, subunit epsilon"
                     /codon_start=1
                     /product="coatomer subunit epsilon"
                     /protein_id="NP_001386367.1"
                     /db_xref="GeneID:290659"
                     /db_xref="RGD:1306785"
                     /translation="MAPPAPGAVSGSSGEVDELFDVKNAFYIGSYQQCINEAQRVKLS
                     SPEREVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASENRRDSIVL
                     ELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECTAMTIQILLKLD
                     RLDLARKELKRMQEQDEDATLTQLATAWVNLAMGGEKLQEAYYIFQELADKCSPTLLL
                     LNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQ
                     LKDAHRTHPFIKEYQAKENDFDRLALQYAPSA"
     exon            170..232
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     exon            233..333
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     exon            334..486
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     exon            487..540
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     exon            541..622
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     exon            623..778
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     exon            779..847
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     exon            848..922
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1054
                     /gene="Cope"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctacgtgtct cccaggaaga agaccggtta gaggggtggt gacatggctc ctccggctcc
       61 cggcgcggtc tctggcagct ctggagaggt agacgagctg ttcgacgtga agaacgcttt
      121 ctacatcggc agctaccagc agtgcattaa cgaggcgcag cgcgtgaagc tgtccagtcc
      181 tgagagagaa gtcgagaggg atgtcttcct gtatagagca tacctcgcac agaggaagta
      241 tggtgtggtc ctggacgaga tcaagccttc ctcggctcca gagctccagg ctgtacgaat
      301 gtttgctgag taccttgcca gtgagaaccg aagggacagc atcgtactgg agctggaccg
      361 cgagatgagc agaagtgtgg atgtgaccaa taccactttc ctgctcatgg ctgcctccat
      421 ctacttccat gaccagaacc cggatgcagc cctgcgcacc ctgcaccagg gtgacggcct
      481 tgagtgcacg gccatgacga ttcagatcct cctcaagctg gacaggctgg acctagcccg
      541 gaaggagctg aagcggatgc aggagcaaga tgaggacgcc accctcaccc agctggccac
      601 tgcctgggtt aacctggcca tgggtggtga gaagctgcag gaagcctact acatattcca
      661 ggagctggca gacaagtgct cgcccacact gctgctgctc aatggccagg cagcctgcca
      721 ctcggcacag ggccgctggg agaccgcgga gggcgtgctt caagaggcac tggacaagga
      781 cagtggccac cctgagaccc tcatcaacct cattgtactg tcacagcacc tgggcaagcc
      841 ccctgaggtg acaaaccgat acttgtcaca gctgaaggat gcacacagga cccacccctt
      901 catcaaggag taccaggcca aggagaacga tttcgatcgc ctggcactgc agtacgcacc
      961 cagcgcctaa ggtggagatg ccgtggtgac cccactgtgt gctgcaggat gctgtcctct
     1021 cttccttgtc tgccaataaa gtctgctcat ggtc
//
