LOCUS       XM_008769687            3910 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen
            beta(1-O)galactosyltransferase 2 (Colgalt2), mRNA.
ACCESSION   XM_008769687
VERSION     XM_008769687.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 18, 2024 this sequence was replaced by
            NM_001427297.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008769687.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3910
                     /gene="Colgalt2"
                     /note="collagen beta(1-O)galactosyltransferase 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 28 ESTs, 11 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     58 samples with support for all annotated introns"
                     /db_xref="GeneID:289081"
                     /db_xref="RGD:1304702"
     CDS             287..2164
                     /gene="Colgalt2"
                     /codon_start=1
                     /product="procollagen galactosyltransferase 2"
                     /protein_id="XP_008767909.2"
                     /db_xref="GeneID:289081"
                     /db_xref="RGD:1304702"
                     /translation="MAARRATVACALLLLSSALLRRGCPARFAAESESDEDGEETVAF
                     PESPLQKPTVFVVVLARNAAHTLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEILR
                     EWLKNVQRLYHYVEWRPMDEPESYPDEIGPKHWPSSRFAHVMKLRQAALRTAREKWSD
                     YILFIDVDNFLTNPQTLNLMIAENKTILAPMLESRGLYSNFWCGITPQGFYKRTPDYL
                     QIREWKRTGCFPVPMVHSTFLIDLRKEASDKLSFYPPHQDYTWTFDDIIVFAFSSRQA
                     GIQMYLCNKEHYGYLPIPLKPHQTLQEDIENLIHVQIEAMIDRPPMEPSQFVSVVPKY
                     PDKMGFDEIFMINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKAWNIEM
                     LPGYRDPYSSRPLTRGEIGCFLSHFSVWKEVIDRELEKTLVIEDDVRFEHQFKRKLMK
                     LMDDIDKARLDWELIYIGRKRMQVKEPEKAVPNVVNLVEADYSYWTLGYVISLEGAQK
                     LVGADPFGKMLPVDEFLPIMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTHYTGQPG
                     YLSDTETSTIWDNETVATDWDRTHSWKSRKQGPIHSNAKNTEALPPPTSLDTVPSRDE
                     L"
ORIGIN      
        1 acagctctgg aggaagccgc agacctcagc tgtacaagcg cagcctggac taggggaagt
       61 tttccctggg aaagatcagc ctcacggcgt cgacctgtcc gcggggcgga gcgcggggcg
      121 agcgcgggtg gccgggagtc ggtgcacagg ggactcgggc cagggctggg cggcggcggg
      181 tcccgcgagc tgcagaagtc ggtgcccgtg cgcgttcccg ccgtccccga gcagccgaac
      241 ccccggcgcc actggcagca tcgccgcctc ccgctggcca cggaacatgg ctgcgcgccg
      301 cgccaccgtc gcctgcgcgc tgttgctgct gtcctccgcc ctgctccgcc gcggctgccc
      361 ggcgcgcttc gctgccgagt ccgagtcgga tgaggacgga gaggaaacgg tggcgttccc
      421 cgagtcgccc ctgcagaaac ccactgtgtt cgtggtcgtc ctcgcccgca acgcagcgca
      481 cacgctgcct cacttcctgg gctgcctgga gcggctggac tatcccaaga gcaggatggc
      541 catctgggca gccaccgatc acaacgtgga caatacaacg gagatactca gggagtggct
      601 gaaaaacgtg cagcgtctgt atcactatgt ggagtggagg cctatggatg agccagagtc
      661 ttaccctgat gaaattggac caaagcactg gccaagctcc cggtttgctc acgtcatgaa
      721 gctgcggcag gcagcccttc gaactgcgag ggaaaaatgg tcagactaca tcctgttcat
      781 agatgtcgac aacttcctga ctaatccaca gaccctgaac ctaatgattg cagaaaacaa
      841 aaccatcctg gcacccatgc tggagtcccg gggtctgtat tctaacttct ggtgtggaat
      901 cacacctcag ggcttctata agcggacccc agactacctt cagattagag agtggaagag
      961 gacgggctgc ttccccgtcc ctatggtcca ttccaccttc ctgatcgacc tcaggaaaga
     1021 ggcctcggac aagctgtctt tctacccgcc acaccaggac tacacctgga cctttgatga
     1081 catcatcgtt tttgccttct ccagcaggca agcaggcatc cagatgtacc tgtgcaacaa
     1141 agaacactat ggctacctgc ccatccctct gaagccccac cagacgctgc aggaggacat
     1201 cgagaacctc atccacgtgc aaatagaagc aatgattgac cgtcctccaa tggagccttc
     1261 ccagtttgtg tcagttgtcc ctaaatatcc agacaagatg gggtttgatg agattttcat
     1321 gatcaacctc aagcgcagga aggacaggcg ggacaggatg ctgcgtacac tctacgaaca
     1381 ggagattgag gtcaagattg tggaggccgt ggatgggaag gcactcaaca caagccagct
     1441 gaaggcctgg aacattgaaa tgctcccagg ttaccgggac ccctactcct ccaggccctt
     1501 aaccaggggt gaaatcggtt gcttccttag tcacttctct gtctggaaag aggttattga
     1561 ccgagagctg gagaagactc tcgtcattga ggacgatgtg cgttttgagc atcagtttaa
     1621 gaggaagcta atgaagctga tggatgacat tgacaaggct cggctggact gggaactgat
     1681 ttacatcggt cgaaaaagaa tgcaagtcaa agagccagag aaggcggtgc ccaatgttgt
     1741 aaatctcgtt gaagctgatt attcctactg gacgctgggc tacgtcatct ccctggaagg
     1801 agcacagaag ctcgttggag ctgatccctt tgggaagatg ttgccagtgg atgagttcct
     1861 gccaatcatg tacaacaagc atcccgtggc agagtacaag gagtattacg aatccaggga
     1921 cttgaaagcc ttctctgcag aacctctgct catctacccc acacactaca cgggccagcc
     1981 aggctatctg agcgacacag aaacgtcaac catctgggac aatgagacag tggccactga
     2041 ctgggacagg acacactcct ggaagtcccg gaagcaagga cccatccaca gcaacgccaa
     2101 gaacacggaa gcactaccac cgccgacctc tctggacact gtgccttcaa gggacgaact
     2161 ctgaaagctg cctgggtgtg tggtccaccc ggttcatcac tgtctgggtt ttctaaagag
     2221 ctactcatct gtttgctcca ttatagagac ggcagtcgtc tcatcaagtg gtttgatatg
     2281 attcaccaaa attatataat ttgaatagcg aagagcagag aaattaaaaa ccaaattccc
     2341 taggaaacca ttgctgaaac agcaaagtta aacttcagtc taaatgccca gttcctctca
     2401 ctagccatag aacgctgtta gccccactga tgtggcaatg tggctcatag actcctccaa
     2461 gaaatggcct ccccaagctg tcacatcagt aggagggcag tcaacatgga caagccaatg
     2521 gaccttactt actaacctga gtggtccgtt ttatgtggtg gatgtgaccc tgaaaccatc
     2581 aagccagcta aactacattt acttgtctat ttgatgttag acaacaggtc tatgtaacaa
     2641 gtgtctgggg tggggaaacc aagtcattaa tctggctttt gttcaaagaa gctccgtcat
     2701 gagcttgttg aaaggggacg ctttattcct ggctttatta tggagtaagt aactggcatg
     2761 gtctgagacg tggctcttga ccatcatggc aacttccatt caaaacgtct aggtgccgtg
     2821 tggctataat agttagatat ttatggggga aagagctcaa cctttggcat ttgtattgtg
     2881 gcttaagtcc catatgtcta tttataaaga aaactgtaat atatacagct tgtgagggag
     2941 ggggtgaccc aaaacctcac acctcatgcg tcaccccctc acctggggat gaaccgcacg
     3001 tatgggttta atcacgtcac tgtcgagagg cagaacgcat ttcagcctca ctgtcgtcct
     3061 tgccttggat tttcattatg ttctgaatta tttattttac aaatgtgggg aaaaaacatt
     3121 gtctgtaggg tgaagcagat gtctcagact cccgttgcaa accggggaat gtcagtgtag
     3181 acacctgggt ccgaccatct gagttgcctg aatttcccag cttggctttt gcagggaaga
     3241 ctgctgttga caggcttcca gtcaggagta acttattccc cagtgaatgt aggagacatt
     3301 ggtccagaca atagatttaa gtcaaccatc tacagctctc agagccaaaa agcctaaata
     3361 gaaaaatgtc ccctaaaact ccttcctaat tcttcctagg ctaaatttat gtcaggtgca
     3421 atgctggact gtgtcacggt gtccagattc acagccagct gtctgagagt gtctctcgcg
     3481 cttcacctca gccgcccttc cctcctggtt cagtcttctc gactgaagct gagaggccag
     3541 gcagctccac ttgcctctct cacctagaaa aacagaaaag agcattgggg agctcaagag
     3601 gaaccctaag tgattcctga ggtctcctcg ggtgtttggc gttttgtttg tttgaatgtg
     3661 tgcaagtatg cctggcttta actgtgtctt aaaggggtgg gaggcggctg gggtgctggg
     3721 agtggaggga gactgagttg tgtattgtgt tgttgttgtt gttgttgtct taatggggaa
     3781 ttttcctcca tttgccctgt cagctggtct gacggattta agaattttca ttcttaaaag
     3841 acatcggatt tcaatttttg aatcttagat taggaccttt ctaactgtga ataaagttct
     3901 ggttctctta
//
