LOCUS       NM_001106067            3039 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus collagen beta(1-O)galactosyltransferase 1
            (Colgalt1), mRNA.
ACCESSION   NM_001106067 XM_001065700 XM_001065807 XM_001065857 XM_214295
VERSION     NM_001106067.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3039)
  AUTHORS   Baumann S and Hennet T.
  TITLE     Collagen Accumulation in Osteosarcoma Cells lacking GLT25D1
            Collagen Galactosyltransferase
  JOURNAL   J Biol Chem 291 (35), 18514-18524 (2016)
   PUBMED   27402836
REFERENCE   2  (bases 1 to 3039)
  AUTHORS   Liefhebber JM, Punt S, Spaan WJ and van Leeuwen HC.
  TITLE     The human collagen beta(1-O)galactosyltransferase, GLT25D1, is a
            soluble endoplasmic reticulum localized protein
  JOURNAL   BMC Cell Biol 11, 33 (2010)
   PUBMED   20470363
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3039)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC160899.1.
            
            On Mar 16, 2008 this sequence version replaced NM_001106067.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC160899.1, SRR8487231.170736.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3039
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..3039
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /note="collagen beta(1-O)galactosyltransferase 1"
                     /db_xref="GeneID:290637"
                     /db_xref="RGD:1309002"
     exon            1..247
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     CDS             3..1856
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /EC_number="2.4.1.50"
                     /note="procollagen galactosyltransferase 1;
                     glycosyltransferase 25 domain containing 1"
                     /codon_start=1
                     /product="procollagen galactosyltransferase 1 precursor"
                     /protein_id="NP_001099537.1"
                     /db_xref="GeneID:290637"
                     /db_xref="RGD:1309002"
                     /translation="MAALPCWSRGLLLLPLLLLLLLLGGPRGADGYFPEERWSPESPL
                     QAPRVLIALLARNAAPALPATLGALERLRHPRERTALWVATDHNTDNTSAILREWLVA
                     VKGLYHSVEWRPAEEPSSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFV
                     DSDNLITNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKR
                     DRRGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMY
                     VCNKEVYGFLPVPLRSHSSLQDEAESFMHVQLEVMVKHPPVQLSRFISAPKKTADKMG
                     FDEVFMINLKRRLDRRERMLRALHEQEIDFQLVEAVDGKAMNTSQVEAMGIQMLPGYR
                     DPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMQDV
                     EREGLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGAQKLLAAK
                     PLAKMLPVDEFLPVMFDKHPMSEYKSHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDT
                     ETSVVWNNEQVKTDWDRAKSQKMREQQALSREAKNSDVLQSPLDSTARDEL"
     exon            248..358
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            359..476
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            477..611
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            612..816
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            817..936
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1013
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1120
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1253
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1381
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            1382..1588
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
     exon            1589..3013
                     /gene="Colgalt1"
                     /gene_synonym="Glt25d1; RGD1309002"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgatggcggc gttgccctgc tggtcgcgcg ggctgctgtt gctgccgctg ctcctcctgt
       61 tgctgcttct gggcggtccg cgcggcgctg atggctactt cccagaggag cgctggagcc
      121 ctgagtcccc gctacaggcg cctcgcgtgc tcatagcgct gctggcgcgg aacgccgcac
      181 ccgcgttgcc ggccacgctg ggcgccctgg aacggctgcg ccacccacgg gagcgcacgg
      241 cgctgtgggt ggccacagat cataatactg acaacacttc agccatactt cgagagtggc
      301 tggtggcagt gaagggttta taccactctg tggagtggcg gccggcagag gaacccagct
      361 cctacccaga tgaagagggc cccaaacact ggtctgattc ccgctatgaa catgtcatga
      421 aactgcgcca agcagccttg aagtcagcta gggacatgtg ggctgactac attctgtttg
      481 tggacagcga caacttgatt accaaccccg acactctgag cctgctcatt gctgagaaca
      541 agacagtggt ggcccccatg ctggactccc gggcagcgta ctccaacttc tggtgtggga
      601 tgacctcgca gggctactac aagcgcaccc ctgcctatat ccccatccga aaacgagacc
      661 gcaggggctg ctttgcagtt cccatggtgc actctacctt cctcattgac ctgcgtaagg
      721 ccgcatccag gaacctggcc ttctacccac cacacccgga ctacacctgg tcttttgatg
      781 acatcatcgt cttcgccttc tcctgtaaac aggcggaggt gcaaatgtac gtgtgcaata
      841 aggaggtgta cggcttcttg cccgtgccgc tacgctcgca cagcagcctg caggacgagg
      901 cagagagctt catgcacgtg cagctggagg tcatggtgaa gcatccacca gtgcagctct
      961 cccgattcat ctcagcaccc aagaaaactg cagacaagat gggctttgac gaggtcttca
     1021 tgatcaacct gaagcggagg ctggaccggc gagagcgcat gctgcgggca ctgcatgagc
     1081 aggagattga cttccagctg gtagaggctg tggacggcaa agccatgaac accagccagg
     1141 tggaggctat gggcatccag atgctgcctg gctaccggga cccctaccat gggcggccac
     1201 tcaccaaggg agagctgggc tgctttctca gccactacaa catctggaaa gaggtggttg
     1261 accggggact acagaaatca ctagtctttg aggatgatct acgttttgag atcttcttca
     1321 agagacgtct gatgaacctc atgcaggatg tggagcgtga ggggctggat tgggacctca
     1381 tctacgtggg ccggaagcgc atgcaggtgg agcaccctga aaaagctgtg ccccgtgtaa
     1441 ggaacctggt ggaggctgat tactcctact ggacactagc ctatgtaatc tccctgcaag
     1501 gtgctcagaa gttgcttgct gccaagccac tggccaaaat gctacctgtc gatgagtttc
     1561 tgcctgtcat gtttgacaag cacccaatgt cagaatacaa gagtcacttc tctccccgca
     1621 acctgcgtgc cttctccgtg gagcccctcc ttatctaccc tacacactac acgggggatg
     1681 atggttatgt gagtgacaca gagacctcag ttgtgtggaa taatgaacag gttaagaccg
     1741 actgggacag agccaagtcc cagaagatgc gggaacagca agcactgagc cgtgaggcca
     1801 agaactcaga tgtgctccaa tctccactgg acagcactgc ccgtgatgag ctttgaggca
     1861 actggcaaaa agccaaagac actgccaccc acctaaactt catgtgcttg cctggaactg
     1921 actatagggc cacctaggca gacaacagag ggctctacaa gcacagaggt ctccatgtct
     1981 tcctgtttag cagccacttg cacacaggca gcatttatgg agtacttact gtatgctgga
     2041 aacagggctg gccaccaaga gattgggcag gagcaagcac agtgcgttgg gtccaccgtg
     2101 aaggaagttt ccttgttaga gcagggaaag aggcatgact cccccttatc agtgattgat
     2161 ttcatcatca ggtttttttg ttcagcctga gtcaggtgtt agggatacat actcattttt
     2221 aaaatctgag tgtttattga gggcttactg tgtgttaggc accattctta gctctgggaa
     2281 tactaaaaca agaaaaaagt caatacacca agaaactgct ataagccagg tcctaggaaa
     2341 cactgatgag ctgagtgcct actgtgtgtc actcagtaca tgctggggat ggaggtccca
     2401 atggtgctta tctttgtagt aggcacgatg tgcttacagt ggaaacagta ttattgaccc
     2461 catgtgctag gcgacaggct gagcacagtg acagagtctg aacagaatgt aacaagcatt
     2521 tattgagcac ctagtgtgtc aggcctcaga atcccagttg ggttgagaaa tagccaccct
     2581 tcaacctgtc tgcagaggac actgtgcttc ctgtgtccag atgggaggtt cttattccct
     2641 tgtttgactg ctgggtttca gggtattcat gactttgtaa gctcctcccc ccccacgggg
     2701 gggggggcgt gtgtgtgcag gtaggggcta tggctccctt gcccacccct ggtttccaga
     2761 gcttctccct gcctttgtgt ctcaggtgtc tcttggctgc tcatgtgttt ggggcctcga
     2821 gaggcccagc tgcattgggg tgctcctctt ggcctgggtt gtttttccca gcaggccagg
     2881 tggccgctgt gccttcaaag ccaaagcaaa tgtcagctgg tcagcaggtg ccaccttctg
     2941 gggatgactg cttgcccact caggtcttgg taacttgctt gtgtttgtat taaatcatcc
     3001 tcattggttt tcaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
