LOCUS       XM_006239960            1603 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collectin sub-family member 11
            (Colec11), transcript variant X1, mRNA.
ACCESSION   XM_006239960
VERSION     XM_006239960.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 11, 2024 this sequence was replaced by
            NM_001427172.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006239960.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1603
                     /gene="Colec11"
                     /note="collectin sub-family member 11; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 2 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:366588"
                     /db_xref="RGD:1309678"
     CDS             260..1093
                     /gene="Colec11"
                     /codon_start=1
                     /product="collectin-11 isoform X1"
                     /protein_id="XP_006240022.1"
                     /db_xref="GeneID:366588"
                     /db_xref="RGD:1309678"
                     /translation="MMRDLALAGMLISLAFLSLLPSGCPQQTTEDACSVQILVPGLKG
                     DSGEKGNKGAPGRPGRVGPTGEKGDMGDKGQKGTVGRHGKIGPIGAKGEKGDSGDIGP
                     PGPSGEPGIPCECSQLRKAIGEMDNQVTQLTTEIKFIKNALPSPAAVAGVRETESKIY
                     LLVKEEKRYADAQLSCQGRGGTLSMPKDEAANGLMASYLAQAGLARVFIGINDLEREG
                     AFVYSDRSPMQTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHITMYFMCEFDKEN
                     L"
ORIGIN      
        1 ttcccacact ccacaggccc ctgcaggaca gctgatggtt tcaggcagga agctcttgca
       61 gataaggctg ccgctccaac agattcgctg ggctgtctga catcccaggc agggtttctc
      121 tctgagttgg actgcagctg gtctctgtaa ataacagcca tgaggttcct tggagcagtg
      181 tctctgccag ccggtgactg tcaggacagc tccttcgctt agtgggtatc caggagtcag
      241 cgtcctgcct gcactcgtga tgatgaggga cctggctctt gcaggcatgc tgatcagcct
      301 ggctttcctg tccctactgc catctggatg tccccagcag accacagagg acgcctgctc
      361 cgtgcagatt cttgtccccg gcctcaaagg ggattcagga gaaaagggaa acaaaggagc
      421 cccaggacgg ccaggaagag tcggccccac aggagaaaaa ggagacatgg gggacaaggg
      481 acagaaaggc actgtgggcc gccatggaaa aattggtccc attggcgcaa aaggtgaaaa
      541 aggagattct ggtgacatcg gaccccctgg tcccagtgga gaacctggta ttccatgtga
      601 gtgcagccag ctgaggaagg ctattgggga gatggataac caggtcactc aactgacaac
      661 tgagataaaa ttcataaaaa atgcactgcc ctcccctgca gctgttgctg gtgtgcgcga
      721 gaccgagagc aagatctacc tgctggtgaa ggaggagaag cggtatgcag atgcccagct
      781 gtcctgccaa ggccgaggag gcacactgag catgcccaaa gacgaggcag ccaatggcct
      841 gatggcttca tacctggcac aggctggcct ggctcgggtc ttcattggca tcaatgacct
      901 ggagagagaa ggtgctttcg tgtactcgga ccgctcccct atgcagacct tcaacaaatg
      961 gcgcagcgga gagcccaaca acgcttatga tgaggaggac tgtgtggaga tggtggcctc
     1021 aggtggctgg aacgatgtgg cctgccacat taccatgtac ttcatgtgtg agtttgacaa
     1081 agagaacttg tgagggccga caggggagac ggccatctga accctacctt ttgtagccac
     1141 cagcatccac aagctacccc taaacaccac tagccatgtc tgtgggttcc tttccactcg
     1201 gtagtgcgga gcctcgttgg cagctgggag ggttgtttgg accacaggag gggagaaatc
     1261 ttgtttccta gtgctgttgt gaataggtgc cattttatcc cccttgtgag acgtttatta
     1321 tggctaacca ctcagaagga tgctgtgaag ctcttgcctt ggtccagtca caaaacatgg
     1381 taaatgtcgc agcagctagc aaacagtggc tataggggca gagttgccgc ccaccctata
     1441 aactacacag aaagcaccca ggtggtggcg accaatgttt ctataggtta ctctaccaca
     1501 tagattcctt tcactgtatg ttatgtaggt aagatgactg tggctctgct tcaaatcccg
     1561 tatttcagga aaacaaataa atcctctgac ttctgctacg gaa
//
