LOCUS       NM_001130541            4552 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus collectin subfamily member 10 (Colec10), mRNA.
ACCESSION   NM_001130541 XM_001066452 XM_235330
VERSION     NM_001130541.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4552)
  AUTHORS   Munye MM, Diaz-Font A, Ocaka L, Henriksen ML, Lees M, Brady A,
            Jenkins D, Morton J, Hansen SW, Bacchelli C, Beales PL and
            Hernandez-Hernandez V.
  TITLE     COLEC10 is mutated in 3MC patients and regulates early craniofacial
            development
  JOURNAL   PLoS Genet 13 (3), e1006679 (2017)
   PUBMED   28301481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4552)
  AUTHORS   Kawai T, Suzuki Y, Eda S, Kase T, Ohtani K, Sakai Y, Keshi H,
            Fukuoh A, Sakamoto T, Nozaki M, Copeland NG, Jenkins NA and
            Wakamiya N.
  TITLE     Molecular cloning of mouse collectin liver 1
  JOURNAL   Biosci Biotechnol Biochem 66 (10), 2134-2145 (2002)
   PUBMED   12450124
REFERENCE   3  (bases 1 to 4552)
  AUTHORS   Ohtani K, Suzuki Y, Eda S, Kawai T, Kase T, Yamazaki H, Shimada T,
            Keshi H, Sakai Y, Fukuoh A, Sakamoto T and Wakamiya N.
  TITLE     Molecular cloning of a novel human collectin from liver (CL-L1)
  JOURNAL   J Biol Chem 274 (19), 13681-13689 (1999)
   PUBMED   10224141
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 28, 2008 this sequence version replaced
            XM_235330.3, XM_001066452.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ238217.1, FQ113591.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4552
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q32"
     gene            1..4552
                     /gene="Colec10"
                     /note="collectin subfamily member 10"
                     /db_xref="GeneID:299928"
                     /db_xref="RGD:1307149"
     exon            1..157
                     /gene="Colec10"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..843
                     /gene="Colec10"
                     /note="collectin-10; collectin sub-family member 10
                     (C-type lectin)"
                     /codon_start=1
                     /product="collectin-10 precursor"
                     /protein_id="NP_001124013.1"
                     /db_xref="GeneID:299928"
                     /db_xref="RGD:1307149"
                     /translation="MNGCRVLLRRNQFILLLLFLLHFQSLGLDVDGRSAAEVCVTHTI
                     SPGPKGDNGERGDTGEEGKDGKVGRQGPKGVKGELGDMGAQGDIGKSGPIGKKGDKGE
                     KGLLGVPGEKGKAGTICDCGRYRKVVGQLDISVARLKTSMKFIKNVIAGIRETEEKFY
                     YIVQEEKNYRESLTHCRIRGGMLAMPKDEVVNTLIADYVAKSGFFRVFIGVNDLEKEG
                     QYVFTDNTPLQNYSNWKEGEPSDPYGHEDCVEMLSSGRWNDTECHLTMYFVCEFVKKK
                     N"
     exon            158..229
                     /gene="Colec10"
                     /inference="alignment:Splign:2.1.0"
     exon            230..301
                     /gene="Colec10"
                     /inference="alignment:Splign:2.1.0"
     exon            302..355
                     /gene="Colec10"
                     /inference="alignment:Splign:2.1.0"
     exon            356..451
                     /gene="Colec10"
                     /inference="alignment:Splign:2.1.0"
     exon            452..4552
                     /gene="Colec10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accacagtca tgaatggctg tagagtcctg cttcgaagaa accagttcat cctgctgctg
       61 ctgtttctct tgcactttca gagtctgggt ctggatgttg atggtcgctc tgctgcagaa
      121 gtctgtgtca cacataccat ttcaccagga cctaaaggag ataatggtga aagaggtgac
      181 acaggagaag aaggcaagga tggcaaagtg ggacgccaag gaccaaaagg agttaaagga
      241 gagctgggtg atatgggagc ccagggcgat attggcaagt ctggtcctat tggcaagaag
      301 ggtgacaaag gagagaaagg tctgcttggg gtacctggag aaaaaggcaa ggcaggtacc
      361 atctgcgact gtggcagata ccggaaagtg gttggacaac tggatattag tgttgctcgt
      421 cttaagacat caatgaaatt catcaagaat gtcatagcag ggatccggga aactgaagag
      481 aaattctact acattgtgca ggaggaaaag aactacaggg aatctctgac ccactgcagg
      541 atccggggag ggatgctggc catgcctaag gatgaagttg ttaacactct tattgctgac
      601 tatgtcgcca agagtggctt cttcagagtg ttcattggcg tgaatgacct tgagaaggag
      661 gggcaatatg tgttcacaga caacactcca ttgcagaact acagcaactg gaaggagggg
      721 gagcctagtg acccctatgg ccatgaggac tgtgtggaga tgctgagctc tggcaggtgg
      781 aacgacacag agtgtcatct taccatgtat tttgtctgtg agtttgtcaa gaagaaaaat
      841 taatttcctt catgttacac aggcactttc tcccagggtc tcctagcagt tacttttatt
      901 cattgttgcc tttctaactt cattgtactt gctaaaatga cagaagggct ctgcctccac
      961 tatcttcttc tgtgttaatt gtgaagtttt tggacatgat gtttacttgg gacgttcttg
     1021 gccatctttc tcttgtatct gtatttaacc cactggtata atggaaggaa ggcactacaa
     1081 ctcaaaaggg gaagggagag ggtagttctg aaacaataca agttataatc cttctattac
     1141 atttttcctt gctattaatg actccatttt atttcatgaa tgtattcatg cagacattct
     1201 tcaccttcag cataaatatt caagagggaa gggttcaagc cttcagaaaa ctctgaaagt
     1261 gctaacgtgc taccctctcc agggcccctc ccccttccat cacataggtt actcatggag
     1321 aaatttcatg ggaggccttt cactccctgt aaattgatgt tgctggagac gccctttgta
     1381 ttattttgac atcacagaga tatgtccagc acagcatttg aaatgtgttt tgaatcctca
     1441 tttaccgaat tggcaacctt gagctgcaga tcaaacctca aagcaacttt aatttggcat
     1501 gtgaaaataa acagttgaaa aaacctcttg ctcctcttct ataaatggat accctactta
     1561 tgggttatga cacatgatta gattgtttaa aatgctagca aaacagttaa tgaaacaagg
     1621 gaaatagatc aacaacatat gctctcctta aaccatctgt tcattacttt gcccatgact
     1681 aactggtagt gagatgaggt tcttggcatt gtctatgtga attcaccaag agctacaaat
     1741 ccacatccta cagagtccag aaagatgaca taaatagatg atctgggagg ggtgaggccc
     1801 ctgatccctg atccactagt cacagcctgc tctttaaagg agccaagtgc ttcttagcca
     1861 ctgcgtcact gccaccaatg acccagaatc actgcaagtc agtatcctga catctgaact
     1921 gaagtcaaat agctggaact ttataactcc atatttctaa gtgatgacaa ttaatcaata
     1981 tttaacccag aatgtaagac ctacaattgt ctgttaacca aattatgaac tttccatttt
     2041 catctctggg gaaagttctg aaagttctaa ttgtgccagg tgtcattagg aaatgattac
     2101 ttcaacatca ggtctcccat gaatgcctta ttcagttcag cttaatagga gaaatttagt
     2161 aaatctttga catttatcag gttattaaag tagttacaga gtctcttttg agaatgtggc
     2221 ataggatatt ttgaaggcca atcagtttaa tataattaca aatcagggca tcacgccaaa
     2281 tgccagccaa gatctcagag aactggaaca ttcagaaaca catggaggaa aggaaagggc
     2341 tgaaagaaga gggtggcagc caagagcaaa tacagaccag ggcggctcct gttggactta
     2401 tgtttgcaat tgctctaagt ccctgaagtc tgaatattgt aaacatatgg caaatgctat
     2461 catttctatt ataaatttat aatgctaaca atcatcctct tagtaactca actcagtttg
     2521 gaggatactc cttagagtag atgacagttt caaggaatag gatccatcca ttctggcctg
     2581 aaagaacctc tttaagacag tacttattta atcagaactc catgaaaatg gtttttctat
     2641 ttgtctttca agtgtgaatg tcagtatata acccaggatg tccttgaact ttcaatcttc
     2701 ctgtgttagc ctcttagatg ctaggtgaca ggtatgcacc accatgccca gctgaaaata
     2761 tacatgttct gtgttttagg aaagcctctg cacctccttc ctcaaggcag gaatttttac
     2821 tgctatgttt ttcagtgaaa acactgcagc tctgggaagc aaagacatta acaagaatgg
     2881 tgcatttgaa agaaaagcaa gtttctatcc tggtccaacc tgaatgttcc atgtattaca
     2941 tgcttaaaag gtagtgagat ctgtgtgtgt caggggtggt gtggagaaat gaagtgagca
     3001 gcctcacttg agatactgtc tacagagact gagatttgtg ttatcactaa tgagaaggtt
     3061 ggtagtgtgg gttcttttag ggtgatacac ccgtgtcagt attgcacaaa agttcaaact
     3121 ctagatctga ccatcagagc tgtctaagtg tcattgctga ttgtgactct tcctagccat
     3181 tttattgggg ataatttaag tgcccttttc cttgtcttta tcattttcat agagaaccgt
     3241 gacaacaaag gaggagtcat ggtgaggtat ttggaggagt atcaactaga cataatatat
     3301 gggtgccaca agacttagac attactacta agtacctgtg gtgttaaggg gtaaatggga
     3361 gaaaacaatg aatattttga gatatataaa atattttgat atatatttac ttaagtaaat
     3421 gtaaatgtat atcagtatat tatgaataga aaatctatat ttagttacat aaagtatgag
     3481 ttttaaatca taaaagtaaa attactggca cctggacaga tagttgaatg gacaagagcc
     3541 catggggaca ccagttaagt tcccagaatc cacattatgg ttaacacttg tctgtaattc
     3601 caactttaag ggatctgaca cctgaagggg aagtttctgg tttctttaaa aaacacagtt
     3661 gtgtcacgtg attttttttt tctgggtgtt gtcttgtgag agagcacgtg atgttttgct
     3721 gaaaacagac acttgagagg gcatgtgatg ttttcaaaga atattaatga atccccacaa
     3781 acagtgaaag gtggcttttg cattgtgata ctataccatg ctttgctggt ctttattggc
     3841 catgctagtc ttgagtggtc ttcccttgtc ttaagtttgt acagcgaaac aagccaaaga
     3901 atttataatg gtattccaga tgattctggc catttattct gacttgtggc aattcagcac
     3961 agccctgtac tttctgctgg atcttgctac cactcataat ttgtatctga tgtatgttgt
     4021 tagactggac tgctggtatc ctgacaaaga aaagtggagt taccctaaaa aactacttct
     4081 aaacaggtcc acaactcccc tttttctccc ctacctctgg ttcagaggac aagaaagaag
     4141 gttaggattt gaaaagaatc taagcctaca gacactatta tctggactcc atgagcacct
     4201 accctcatat gtgcacagtc tcacacacag attcacatat atgcatataa cagtaaaagt
     4261 aaaatcaaac cttttacaaa ataaaactat tagtcgtgct acctttagat tatcaggcct
     4321 tcatattaca gctgaatcct ttcatgtatg agggaaaata tctcttcaca tcatttcaat
     4381 taggattgaa gaactatttt ctattgatca tatatatata aacctttata tagtataggg
     4441 atgtgtttca ctgtaattct aagagattct cattcagact gtttttgtat gcttttggta
     4501 atttaataag cctttgtgac aaattaaaat gcatttcatg taattcacac tc
//
