LOCUS       NM_001108675            2954 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus collagen type IX alpha 2 chain (Col9a2), mRNA.
ACCESSION   NM_001108675 XM_001053671 XM_342903
VERSION     NM_001108675.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2954)
  AUTHORS   Diab M, Wu JJ and Eyre DR.
  TITLE     Collagen type IX from human cartilage: a structural profile of
            intermolecular cross-linking sites
  JOURNAL   Biochem J 314 (Pt 1) (Pt 1), 327-332 (1996)
   PUBMED   8660302
REFERENCE   2  (bases 1 to 2954)
  AUTHORS   Muragaki Y, Mariman EC, van Beersum SE, Perala M, van Mourik JB,
            Warman ML, Olsen BR and Hamel BC.
  TITLE     A mutation in the gene encoding the alpha 2 chain of the
            fibril-associated collagen IX, COL9A2, causes multiple epiphyseal
            dysplasia (EDM2)
  JOURNAL   Nat Genet 12 (1), 103-105 (1996)
   PUBMED   8528240
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473968.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001053671.1, XM_342903.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2954
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2954
                     /gene="Col9a2"
                     /note="collagen type IX alpha 2 chain"
                     /db_xref="GeneID:362584"
                     /db_xref="RGD:1307029"
     exon            1..462
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     CDS             391..2457
                     /gene="Col9a2"
                     /note="procollagen, type IX, alpha 2; alpha 1 type IX
                     collagen; collagen alpha-2(IX) chain; collagen, type IX,
                     alpha 2"
                     /codon_start=1
                     /product="collagen alpha-2(IX) chain precursor"
                     /protein_id="NP_001102145.1"
                     /db_xref="GeneID:362584"
                     /db_xref="RGD:1307029"
                     /translation="MTALPAPRSLLLFLQVLWLALAQIRGPPGEPGLPGPPGPPGVPG
                     SDGIDGDKGPPGKVGPPGSKGEPGKPGPDGPDGKPGIDGLMGAKGEPGPMGTPGIKGQ
                     PGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGTPGPKGDPGPEGPSGPPGPPGKPGRPG
                     TIQGLEGSADFLCPTNCPAGVKGPQGLQGVKGHPGKRGILGDPGRQGKPGPKGDVGAS
                     GEQGIPGPPGPQGIRGYPGMAGPKGEMGPRGYKGMVGSIGAAGPPGEEGPRGPPGRAG
                     EKGDVGSQGARGPQGITGPKGTTGPPGIDGKDGTPGIPGMKGSAGQVGRPGSPGHQGL
                     AGVPGQPGTKGGPGDKGEPGQQGFPGISGPPGKEGEPGPRGETGPQGIMGEKGDQGER
                     GPVGQPGPQGRQGPKGEQGSPGIPGPQGLPGIKGDKGSPGKTGPRGGVGDPGVAGLPG
                     EKGEKGLSGEPGLKGQQGVRGEPGYPGPSGDAGAPGVQGYPGLPGPRGLVGDRGVPGQ
                     PGRQGVVGRAASDQHIVDVVLKMIQEQLAEVAVSAKREALGATGMVGLPGPPGPPGYP
                     GKQGPNGHPGPRGIPGIVGAVGQIGNTGPKGKRGEKGDQGEMGRGHPGMPGPPGIPGL
                     PGRPGQAINGKDGDRGSPGAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSARLTEP
                     GSIKGP"
     exon            463..537
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            538..573
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            574..636
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            637..690
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            691..726
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            727..750
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            751..804
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            805..858
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            859..906
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            907..963
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1017
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1071
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1125
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1179
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1233
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1234..1287
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1288..1341
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..1395
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1396..1440
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1494
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1495..1548
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1602
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1603..1674
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1675..1710
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1711..1755
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1756..1788
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1789..1935
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..1990
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1991..2179
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            2180..2257
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
     exon            2258..2954
                     /gene="Col9a2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaggacccag acaagcctgc cccagacctg aggaaaagat gaggctgagg accaggagga
       61 gagttggatc ctggagggca agggggaaag ggtctttgga tggctttctg ctctccacag
      121 agaaagtggt cccgcacccc gagatgcttc tggggcttcc tagctggggc ttctagtcaa
      181 gttcagaatg cagacccatg gtgggcacag aagatccgcc cctggccggg cggagctgga
      241 cacttcctcc ccacagtgct ctcaggtgac aggcctgcag gtccccgccc cggcccgccc
      301 cgccgcgtat tcaggagatc cagtctgagg ctctgaaagc aacccccgcc gttggtgcgt
      361 ggatccccgc tccagaaccc gctgctcgcc atgaccgcct tgccagcgcc ccgcagcctc
      421 ctccttttcc tccaggtgct gtggctcgcc ctggctcaga tcagaggtcc accaggggag
      481 ccgggtcttc cagggccacc agggccacca ggagtgcctg gttcggatgg catcgacggt
      541 gacaaggggc ctccaggtaa agttggtcct ccgggatcca aaggagagcc tggcaaaccg
      601 gggccagatg gtccagatgg gaagcctggc attgatggtt taatgggagc caagggagag
      661 cctggcccca tgggaacccc tggaatcaag ggccagcctg ggctcccagg gccccctggc
      721 ctgccgggcc ctggttttgc tggacctccg ggaccacctg gacctgttgg cctccctggt
      781 gagattggaa ccccaggccc caagggggat ccagggccag agggaccatc agggccccca
      841 ggaccccctg ggaaaccagg ccgaccagga accatccagg gcctggaagg gagtgcggat
      901 ttcttgtgtc caaccaactg tcctgctggt gtgaaaggtc cccagggtct gcaaggagtg
      961 aagggccatc caggcaaacg ggggattctg ggtgatcctg gtcgccaggg gaagccgggc
     1021 cccaagggag atgtgggtgc ctctggagaa caaggtatcc ctggaccacc gggtccccaa
     1081 ggcatcaggg gctacccagg catggcagga cccaagggag agatgggtcc tcgtggatat
     1141 aaaggcatgg tgggctccat cggggctgct gggccaccgg gtgaagaggg cccaaggggg
     1201 ccaccaggcc gagcgggtga gaagggggat gtggggagcc aaggtgcccg aggaccccag
     1261 gggataacag gcccaaaggg aacaactggt ccaccaggca ttgatggcaa ggatgggacc
     1321 ccgggcatac ctggcatgaa gggcagtgca ggacaggtgg gacggccagg aagcccaggc
     1381 caccagggct tagcgggtgt gccaggtcag cctggaacaa aaggaggccc cggagacaag
     1441 ggtgaacccg gccagcaggg cttcccggga atctctggtc cccctgggaa agaaggggag
     1501 ccagggcctc gaggagaaac tggtccacag ggcatcatgg gagagaaggg tgaccagggt
     1561 gagagagggc cagtggggca gccaggccct caaggacgac agggccccaa gggagagcag
     1621 ggatctccag gaattccagg accccaaggc ttgccaggca tcaaaggaga taagggttcc
     1681 ccagggaaga ccgggccccg aggtggagtg ggtgacccgg gggtggccgg cctcccagga
     1741 gagaaaggag agaagggcct gtcaggcgag ccagggctta agggacagca aggagttcgt
     1801 ggagagccgg gctaccctgg ccctagcgga gatgctggtg ccccaggagt gcagggctat
     1861 cctgggcttc ccgggccccg aggactggtg ggagatcgag gcgtgccagg acaaccgggg
     1921 agacagggtg tggtgggccg agctgccagt gaccagcaca tcgtggatgt ggtgctgaag
     1981 atgattcaag agcaacttgc agaggtagct gtgagtgcca agcgagaagc cctgggtgca
     2041 acagggatgg tgggccttcc aggacctcct gggccccctg gatatccagg caaacaggga
     2101 cccaatgggc accctggccc ccgaggcatt cctggcattg tgggagctgt gggtcagatt
     2161 ggcaacactg gacccaaggg aaagcgtgga gagaagggag atcaaggaga aatgggacgt
     2221 ggccatcccg ggatgcctgg gccaccaggg atcccaggtc ttcctggccg gcctggccag
     2281 gccatcaacg gcaaggatgg agacagaggg tccccagggg ccccaggaga ggctgggcgg
     2341 cctgggcggc cgggcccagt ggggctccca ggcttttgtg agcctgctgc ctgcttggga
     2401 gcctcagcct atacctctgc tcgcctcacg gagcctgggt ctatcaaggg gccatgagcg
     2461 accagccagg acagagcctg ctagcaccca gggtcacctc tgggtagaca tgcaccccgg
     2521 gcccaggagg ctaggtttct caagatcttg tctggaaggg acccaggggt cctgaagaca
     2581 agttcagtga gggaggggtt ggggaagaga gaactgcccc tcctaaggga agagggtggc
     2641 ttttcttccc agaggaccag ctagctctta cccatgctgt tcagcacggg ccatcctacc
     2701 ctcagggcag cggggctgag gcttctggtg gtccttgccc catttttacc ctctggactt
     2761 atttttattg ggtctgctgg gggagaatac cctgaggtgt cagtccttag gccagccccg
     2821 ctattgcctc tctgtctccc atccgagtat ttaaacatcc atctcccttg ttttggcatc
     2881 ggtttcccag tcccttttgc ctataccact ctggcctttg tgtaaataaa agttcccaag
     2941 ttggttacaa agtg
//
