LOCUS       XM_006238912            5065 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type VIII alpha 2 chain
            (Col8a2), transcript variant X2, mRNA.
ACCESSION   XM_006238912
VERSION     XM_006238912.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238912.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006238912.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5065
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5065
                     /gene="Col8a2"
                     /note="collagen type VIII alpha 2 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 16 ESTs, 8 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     25 samples with support for all annotated introns"
                     /db_xref="GeneID:313592"
                     /db_xref="RGD:1305182"
     CDS             228..2327
                     /gene="Col8a2"
                     /codon_start=1
                     /product="collagen alpha-2(VIII) chain"
                     /protein_id="XP_006238974.1"
                     /db_xref="GeneID:313592"
                     /db_xref="RGD:1305182"
                     /translation="MQGALMPLPSLLLLLLGCGPRVSSGGGAGGAAGYAPVKYVQPMQ
                     KGPVGPPFREGKGQYLEMPLPILPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGTGKPG
                     VHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGVRGPPGPPGLP
                     GPSGITVPGKPGAQGAPGPPGFRGEPGPQGEPGPRGDRGLKGDNGVGQPGLPGAPGQA
                     GAPGPPGLPGPAGLGKPGLDGLPGAPGDKGDLGPPGVPGSRGEPGAVGPKGPPGVDGV
                     GIPGAAGVPGPQGPAGAKGEPGLRGPPGLIGPVGYGMPGKPGPKGDRGPVGAPGLLGD
                     RGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGSKGEVGPGGPPGVPGIRGDQ
                     GPNGLAGKPGLPGERGLPGTQGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPG
                     QPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGKVGEPGSAGPTGPPGVP
                     GSPGLTGPPGPPGPPGPPGAPGALDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELS
                     AHATPAFTAVLTSPFPASGMPVRFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHV
                     KGTNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLY
                     STEYIHSSFSGFLLCPT"
ORIGIN      
        1 cgcccctcct gccgcccgcc cactcggccg gggcgcgggg cagcgggcag agcgacgcgg
       61 agctctggcg gcgcggaccc cgacgacgtc ccagcccaga gcctgcgcca tccgggtccc
      121 cttcgagcgc tggagcgccg cccggaggcc gccctgcagg taaaggctct gcctctccta
      181 ggacgttcgt ggccccgccc acctgaaaaa gcacatccac agacgccatg cagggggctc
      241 tgatgcccct gccttcgctg ctgttgttgc tgttggggtg tgggccaaga gtgtcctctg
      301 gcggtggagc tggcggcgca gctggctatg ccccggtaaa gtatgtgcag cccatgcaga
      361 aaggaccagt gggaccgcct ttccgagagg gcaagggcca gtacctggaa atgcctctac
      421 cgatcctgcc aatggacttg aaaggagagc caggcccccc tgggaaaccg ggacctcggg
      481 gtccccctgg gcctcctggt ttcccaggaa aaccaggcac tggaaaacct ggggtccatg
      541 gacaaccagg ccctgctggg ccccctggct tctccaggat gggcaaagct ggtcctccag
      601 ggcttccagg caaggttgga ccaccagggc agccagggct gcggggggag ccagggatac
      661 gaggagacca gggtgtccgg gggcccccag gaccccctgg ccttcctggt ccttcaggta
      721 ttactgtccc tggaaaacca ggtgcccagg gagctccagg gcctccagga tttagagggg
      781 agccaggacc ccagggagag cctggacccc gaggagatag gggcctcaaa ggggataatg
      841 gagtgggcca accagggttg cctggggccc ctgggcaggc aggtgcccct gggcctcctg
      901 ggctgcctgg tccagctggc ttgggaaaac caggtttgga tgggttacca ggagcccctg
      961 gagacaaggg tgatttgggg ccccccgggg ttccaggctc taggggagag ccaggagctg
     1021 tgggtccaaa agggcctcct ggggtagatg gtgtggggat accaggggca gcgggggtgc
     1081 cagggccaca gggtccagca ggggctaaag gggagccagg gctccggggc ccacctggct
     1141 tgataggccc tgtgggctat gggatgccag gaaaaccagg acctaaggga gacaggggcc
     1201 cggttggggc cccaggcctc ttaggagaca gaggtgagcc aggagaggat ggggagccag
     1261 gggaacaggg tccacaggga cttgggggtc cacctggcct tcctggatct gcagggcttc
     1321 ctggtagacg tgggccccct gggtcaaagg gagaggtagg acctggaggt ccaccaggcg
     1381 tgcctggcat tagaggtgac caagggccta atggcctggc tggtaagcct gggctccctg
     1441 gtgagagggg acttcctggg acccagggac cccctggacc aactggcccc aagggtgagc
     1501 caggttttac aggtcgccct ggggggccag gggtggcagg agccctaggt cagaaaggtg
     1561 acttgggcct tcctgggcag cctggcttga ggggtccctc tggaatccca ggactccagg
     1621 gcccagctgg ccctattggg ccccagggtc ttccaggcct gaagggtgaa ccaggccttc
     1681 cagggcctcc tggagaggga aaagtcgggg agcctggctc tgcgggtccc acagggcccc
     1741 ctggagtccc tggctcccca gggctcacag gtcctcctgg gccccctggg cctcctgggc
     1801 ctcctggtgc ccccggagcc ttggatgaga ctggtattgc cggcttgcat ctgcccaatg
     1861 gtggcgtgga gggggctgta ctgggcaaag gaggcaagcc acagtttggg ctcggtgagc
     1921 tgtcagccca cgccactcca gcctttaccg ctgtgctcac ttccccgttc cctgcctcgg
     1981 gcatgccagt taggtttgac cggactctct acaatggcca cagcggctac aacccagcca
     2041 ctggtatctt cacctgcccc gtgggaggcg tctactactt tgcttaccac gtgcatgtca
     2101 agggcaccaa tgtgtgggta gccctgtaca agaacaacgt gcccgccacc tacacatacg
     2161 acgaatacaa gaagggctat ctggatcagg cctccggagg ggctgtgctc cagctgcggc
     2221 ccaacgacca ggtgtgggtg cagatgccgt cagaccaggc caatggcctc tactccactg
     2281 agtacatcca ttcttccttc tcagggtttt tgctctgtcc tacataaccc gtggggggcc
     2341 ctgctgcccc ggcctcctcc tctttagcga tagagacctt tccagttaca gagatctcca
     2401 ttggaaagaa aatcgaaagc tgaacagagg cagcggtggc ctcggcccga gaagactgac
     2461 ctgctctctg taggctgaag tcgtttctgg aagaggttgg cctaatttcc tttccccgag
     2521 gtgcactgtg ggcgttgtac ccctgctttg gacctgcctg gtctgcaggc agcgccccag
     2581 agcactcagc ccgggccccc tcgtgagtcc tggaagctgc tgggagagag atggctttcc
     2641 tgttggcctg agatggcatg gaatgagccc agggcttcct gtgttctctg ggtctcttcc
     2701 agctccccag gagctccagc acacggcatt aggttctctg aggtttttgt ttccttttgg
     2761 gagaaaggaa gaaggggatg gggaccatgg aggcagtcca tgtggataga tgcctggagt
     2821 gatgtgagct cagacctgtc ctggcgggga ctgtggtatg gcgcttgctc ctggcctctg
     2881 gaagactcct gaagcagcca tctgtggaga tctgtgaggg gacacagatc aggggacaag
     2941 ctgatcactc tgctgcctcc ctggctatct ccactggctc tgcatgagcg tggatagcca
     3001 tgggctgagg tgggactgtg tttacacaga ttgcagagcc aaccagggcg gatgatcaag
     3061 caaacatgat acccttccct ttttctctca cctgctgggg gtggggtaat tctctcctta
     3121 tcagactgtt aggggatgct tggcaacccc aaacgaagtg tcttcgaggc agagcgcctc
     3181 ccatcgggcc ccctgaacag aggcacacaa gcttgtgggt gaagacttct gtttctcctt
     3241 aataagaacc atgctgtggg tacttaagtg tctactagag gagctcatct gtgggcactt
     3301 cctctctctc tgccctctgc ttccaatttc ctgttctaag cagtgtaggg cccaggaggc
     3361 taaggctctg aaaggaagga taccagcagg ccccactgga atgagctggc tctagaggct
     3421 tctaccatcc tctctcatca ggaggctcct gcaggaaaca gtcaggccag cttcccagct
     3481 gggctcagtg ctggggggta ggggtggacg ttcttgccta gctaaggatg gctgctttct
     3541 ctgtagttca tgatcttcct ccgccctcac ttagcctact tccctgacag agtgaatctg
     3601 ggacatcaga taggcaaccc accttgtgct ccaatttggg cacattcaac tgcccgtgct
     3661 gacagaccga gggaggatga gggcctagcc ccctacctgg cctacaacct caaagcagcc
     3721 ttagtggact gctcacttca gtttccaaag ggggaatctg cctgggatcg attctgtgtg
     3781 cttttttcct tccacaccca agagaaccag ctagagtctc agagcatcct tgttgggcat
     3841 tttcagtgtc ctccttcccc gggtcaaagc cactaatctg atggtcagag gttaatccgc
     3901 tcccagaggg agccctgaaa gatggctcac agcagacccc atcccgaaag cctttaggaa
     3961 aggattctga aatgttcgtg gattggagct gtaagtgtct ctgaccagct ttgacagtga
     4021 cagctttaac tacgacaact acacttactt tatgcatttg aatattttgg ttcctttttt
     4081 tttttttttc tttttaaaga ttaaggtttt ccactcggga tttcatttct aacctggtgt
     4141 acgaagttcc tctctactta ccacgtaccc catgtcaggt tcagggaaaa atgcaccggg
     4201 gaaatcagag aaaatgggat ttctttttga aaagaaaact acattcctgt tactgaccac
     4261 ccccccaata aaacctgttg tagaaacaca tgctgtgact ctggcctccg tacagacatg
     4321 tttcagtggc atccaggtgc ttcgctggcc cctcgaggaa gtcgctacag cttctcactc
     4381 aggctcctga gggtcgttag aaccactcgc tgctccctca gcgccacctg gcattctatg
     4441 aaaccaaaga agggcagtgg ctggagctgg actgaacttt gtcgaaactc ctgtaagctc
     4501 tcaggagcag tggagcatga cggttggtgc aggatcccaa gggccaagtt acaacatctg
     4561 atataaatta tgaatgaaat tgtgaatctt tggtcctgag gatgggcttg tgctaggcca
     4621 catgcagagg acgggataga gggcactgtg ctgtgcagaa gtacctgttt acagcttgct
     4681 atgcacagaa gcagcgtgct catgtccttg gctctgagga tctggtccat cagacctgat
     4741 aaaagccact tcctgctatc tgcctaccct gagagaacct cagcttggtt ggaagccaac
     4801 tgcctgacgg tcatgaaacc tcaggccaac cactgagctg gctgcacaac cttgtcccct
     4861 cactgaacct ggaaggatgc tcagagatca tcctcatcat ttgtggggag gtgtcaactg
     4921 tcttctttgg ttggtttttg agacagggtc taactctgta gctatggctg tcctggaact
     4981 cactctgtag accaggatag ccttgaaccc agagatctgc ctgcctctgc ctcctgagtg
     5041 ccaggattaa aggcatgggc cacta
//
