LOCUS       XM_215375               4076 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type VI alpha 1 chain
            (Col6a1), mRNA.
ACCESSION   XM_215375
VERSION     XM_215375.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427263.1.
            
            On Jan 21, 2021 this sequence version replaced XM_215375.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4076
                     /gene="Col6a1"
                     /note="collagen type VI alpha 1 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 210 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     110 samples with support for all annotated introns"
                     /db_xref="GeneID:294337"
                     /db_xref="RGD:1565398"
     CDS             163..3267
                     /gene="Col6a1"
                     /codon_start=1
                     /product="collagen alpha-1(VI) chain"
                     /protein_id="XP_215375.5"
                     /db_xref="GeneID:294337"
                     /db_xref="RGD:1565398"
                     /translation="MVTRRPAGNMRLAHTLLPLLLQACWVAAQDIQGSRAIAFQDCPV
                     DLFFVLDTSESVALRLKPYGALVDKVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYS
                     DEVEIIRGLMRMPSGRDELKASIDAVKYFGKGTYTDCAIKKGLEELLIGGSHLKENKY
                     LIVVTDGHPLEGYKEPCGGLEDAVNEAKHLGIKVFSVAITPDHLEPRLSIIATDHTYR
                     RNFTAADWGHSRDAEETISQTIDTIVDMIKNNVEQVCCTFECQAARGPPGPRGDPGYE
                     GERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGKRG
                     IDGVDGMKGETGYPGLPGCKGSPGFDGIQGPPGPKGDAGAFGLKGEKGEAGAEGEAGR
                     PGNSGPPGDEGEPGEPGPPGEKGEAGDEGNAGPDGAPGERGGPGERGPRGTPGVRGPR
                     GDPGEAGPQGDQGREGPVGIPGDPGESGPIGPKGYRGDEGPPGPEGLRGAPGPVGPPG
                     DPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGINGTKGYPGLKGDEGEAGDPGED
                     NNDVSPRGVKGAKGYRGPEGPQGPPGHVGPPGPDECEILDIIMKMCSCCECTCGPIDI
                     LFVLDSSESIGLQNFEIAKDFIIKVIDRLSKDELVKFEPGQSHAGVVQYSHNQMQEHV
                     DMRSPNVRNAQDFKEAVKKLQWMAGGTFTGEALQYTRDRLLPPTQNNRIALVITDGRS
                     DTQRDTTPLSVLCGSDIQVVSVGIKDVFGFVAGSDQLNVISCQGLSQSRPGISLVKEN
                     YAELLDDGFLKNITAQICIDKKCPDYTCPITFSSPTDITILLDSSASVGSHNFETTKV
                     FAKRLAERFLSAGREDPTQVVRVAVVQYSGQGQQQPGRASLQFQQNYTVLASSVDSMD
                     FINDATDVNDALSYVTRFYRENSSGATKKRVLLFSDGNSQGATAEAIEKAVQEAQRGG
                     IEIFVMVVGPQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPNYQALLRGVLYQTVSRK
                     VALG"
ORIGIN      
        1 ccttcctctc cccctcccct cctggtccct ccctctttgc acctccctcc ctccaccctc
       61 cctggctctc ttcacagccc tgggctgtaa cggcagcaag cagagacaac ctctcactct
      121 gtcttcttta ccagcgccca ccctgaccct ggcccgcatt cgatggtgac tcgaaggcca
      181 gccggaaaca tgaggctggc ccacactctg ctgcccctgc tgctacaggc ctgctgggtg
      241 gccgcacagg acatccaggg ctctagagcg attgccttcc aagactgccc tgtggatctg
      301 ttcttcgtgc tggacacctc ggagagtgtg gccttgaggc tgaaacctta tggggccctg
      361 gtggacaagg tgaaatcctt taccaagcgt ttcatcgaca acctgagaga caggtactac
      421 cgatgtgacc gcaacctggt ttggaatgcg ggcgcgctgc actacagtga cgaggtggag
      481 atcatcagag ggctcatgcg catgcccagt ggccgtgacg agctcaaagc cagcatagat
      541 gcggtcaagt acttcgggaa aggcacctac accgactgtg ccattaagaa ggggctggag
      601 gagctgctca ttgggggctc ccacctaaaa gagaacaagt acttgatcgt ggtgactgac
      661 gggcatcccc tcgagggcta caaggaacca tgtgggggtc tggaagatgc agtgaacgag
      721 gccaaacact tgggcatcaa ggtcttttct gtggccatca cacctgatca cctggagcca
      781 cgtctaagca tcatcgccac agaccacaca taccggcgca atttcacggc tgctgactgg
      841 gggcatagtc gagatgcgga agagaccatc agccagacca ttgacaccat tgtggacatg
      901 attaaaaata atgtggagca agtgtgttgt acttttgagt gccaggctgc cagaggacct
      961 ccagggcccc ggggcgaccc tgggtatgag ggggaacgag gaaagccggg tcttcccgga
     1021 gagaagggag aagctggaga ccctggacga cctggggatc ttggaccagt cgggtaccag
     1081 ggtatgaagg gagaaaaggg aagccgtgga gagaagggtt ccagaggccc gaaaggctac
     1141 aagggcgaga aaggcaagcg cggcatcgat ggggtggacg gcatgaaggg agagacggga
     1201 tacccaggac taccaggctg caagggttcg ccaggatttg atggcattca aggaccccca
     1261 ggtcctaagg gcgatgctgg tgcctttggg ctgaaaggag aaaagggtga agctggagca
     1321 gaaggtgagg ctgggagacc tgggaactca gggccacccg gagatgaggg tgaaccggga
     1381 gaacctggtc cccccggaga aaaaggagag gccggtgatg agggaaatgc tggcccagat
     1441 ggtgcccctg gagagagggg cggccctggt gaaagaggac ctcgggggac ccctggtgtg
     1501 aggggcccaa ggggagaccc gggtgaagct ggaccacaag gtgaccaagg aagagagggg
     1561 cctgttggca tccctggaga tccgggtgag agtggcccca tcggacctaa aggataccga
     1621 ggtgatgagg gtcctccagg ccctgagggt ctcagaggag ccccaggacc cgttggaccc
     1681 cccggggacc caggactgat gggtgaaagg ggtgaagatg gaccaccagg aaatggcacg
     1741 gaaggcttcc ccggcttccc tgggtatcca ggcaacagag gccctcctgg gataaatggc
     1801 acgaagggct accctggcct caagggggat gagggtgaag ccggagaccc aggagaggat
     1861 aacaatgatg tttcaccccg tggagtcaaa ggggcaaagg gataccgggg ccccgaggga
     1921 ccccaggggc ctccaggaca cgtgggacca cctgggccag atgagtgtga gattctggat
     1981 atcatcatga aaatgtgctc ctgctgtgag tgcacgtgtg gtcccatcga tattctcttc
     2041 gtgctggata gctcagagag cattggccta cagaactttg agattgccaa ggacttcatc
     2101 atcaaggtca ttgaccggct gagcaaggac gagctagtca aatttgagcc agggcagtcc
     2161 cacgcaggcg tggtgcagta cagccacaac cagatgcaag aacacgtgga catgcggagc
     2221 cccaacgtcc gcaacgccca ggacttcaaa gaagccgtca agaaactgca gtggatggct
     2281 ggcggcacat tcaccggaga agcgctgcag tacacccggg accggctcct cccacccacg
     2341 cagaacaacc gaattgctct ggtcatcaca gacggacgct ctgacactca gcgggacact
     2401 acacccctca gtgtgctctg cggctcagac attcaggtag tttctgtggg catcaaggat
     2461 gtgtttggct ttgtcgcggg ctccgaccag ctcaacgtca tttcctgcca aggcttatca
     2521 caaagccggc cgggtatctc cctggtgaag gagaactatg cagaacttct agatgacggc
     2581 tttttgaaga acataacagc ccagatctgt atagataaga agtgtccaga ttatacctgt
     2641 ccaatcacat tctcctcccc gaccgacatc accattctgc tagacagctc ggccagtgtc
     2701 ggcagccaca acttcgaaac caccaaggtc ttcgccaagc gcctagccga gcggttcctg
     2761 tcagcgggca gggaagatcc cacccaggtc gtgcgggtgg ccgtggtaca gtatagtggt
     2821 caaggccagc aacagccagg tcgagcgtct cttcagttcc agcagaacta cacggtactg
     2881 gccagctctg tggacagcat ggatttcatc aacgacgcca cagatgtcaa cgacgctctg
     2941 agctatgtaa ctcgtttcta ccgggaaaac tcctcaggtg ccaccaagaa gagagtgctg
     3001 ttgttctcag atggtaactc acagggggcc acagcagagg ccattgagaa ggctgtgcag
     3061 gaggcccagc gtgggggcat tgagatcttt gtgatggtgg tgggacccca ggtgaatgaa
     3121 ccccacatcc gtgtactcgt caccggtaag accgccgagt acgacgtggc cttcggcgag
     3181 cgccacctat tccgtgtacc gaactaccag gccctactac gtggtgtcct ctaccagaca
     3241 gtctccagga aggtggccct gggctagagg gccgcacaca tggctgtgcg catgcgtgga
     3301 gacacacttc aacagccctt cttgcccttc ccactgacca aacaggaata ggaaatgtga
     3361 cccaaatgtt cctgaccagt tggtcaactc gactgtctta aagggaaagc tgaggtgcac
     3421 actctttgct ttgtgtaatg tcctccttgg ctcacccgag ttcctatcta gatccctgcc
     3481 cttggtttgt ccgttgcggc ggccatcttg ctgagccccc tccccaatct gggctgggtc
     3541 cggccatctc tcctcctcct cctcaccgcc tctaacctgt ccctggtgtc ttcacaccat
     3601 ccctgcagtt tctgtctgtg ttccgtctgc catgctcaaa gcgaagcaga ccttcccgtg
     3661 ggctcagctt gctggatgat ggcttttaga aaaccgaaag caagaagatt ttcaaacaca
     3721 gacttggagg agacccctct tcttcatcag gtgcttgtca gtgaccgacg cggatctcgg
     3781 tcctggtctt tagtggctca gtgtgagcag cgggaaatgc tggcccctgc ctctagtcct
     3841 taaaagcaaa ggtgctatcc ctctgtaagg gctctcgctg cacacagaga ggacagttca
     3901 cactcacgtg ttctgtcaga accaacccag agcttattcc ctcaaaatag tgatcatccc
     3961 tttttttttt ccaacgactc ctccttggtt agtttttttc ataactccct cacactcccc
     4021 ttaacgtggt ccaagccagc tatctctgct aataaaggtt tttccatttt tctcca
//
