LOCUS       XM_343778               6569 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type IV alpha 5 chain
            (Col4a5), transcript variant X1, mRNA.
ACCESSION   XM_343778
VERSION     XM_343778.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001426996.1.
            
            On Jan 21, 2021 this sequence version replaced XM_343778.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6569
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6569
                     /gene="Col4a5"
                     /note="collagen type IV alpha 5 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 44 ESTs, 4 long SRA reads, 18 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 67 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363457"
                     /db_xref="RGD:1565499"
     CDS             405..5480
                     /gene="Col4a5"
                     /codon_start=1
                     /product="collagen alpha-5(IV) chain isoform X1"
                     /protein_id="XP_343779.2"
                     /db_xref="GeneID:363457"
                     /db_xref="RGD:1565499"
                     /translation="MQVPGVCLAAGWFLLALCLWGQPGEAAACHGCSSGSKCDCSGIK
                     GEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPG
                     TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGS
                     IIMSSLPGPKGNQGYPGPPGIQGPPGPKGVSGPSGPPGPPGLMGPPGPPGPPGPKGNM
                     GLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDLDFQKGDQGVPGDRGPPGPPGIPG
                     PPGPPGGVKGEKGEPGEPGKRGKPGKDGETGQPGIPGLPGDPGYPGEPGRHGEKGQKG
                     DTGPPGPPGFVIPTPGTGVTIGAKGNIGQPGLPGEKGERGFPGIQGPPGFPGPPGTAV
                     MGPPGPPGYPGERGQKGDEGPPGICIPGSPGLDGQPGAPGFPGPPGPPGPQLPPSDEI
                     CKAGPPGPPGSPGDQGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSL
                     GIPGEKGEKGQAGTTGPKGLPGIPGPPGAPGFPGSKGDPGDVLTLPGMKGEKGELGSP
                     GAPGLPGLPGSPGKDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNMGPTGPVG
                     FGPPGPVGEKGIQGVAGNPGQPGLPGPKGDPGQTISQPGKPGLPGNPGRDGEVGLPGD
                     PGLPGQPGLPGIPGSKGEPGIPGIGPPGPPGPKGFPGIPGPPGPPGAPGRMGPEGPPG
                     LPGFPGPKGEPGFGLPGPPGPPGFPGFKGTPGPKGDRGLPGPPGPPGHTGLDGLPGPK
                     GDAGPNGQPGPIGPPGLPGIGLQGPPGPPGTPGPIGQPGLHGIPGEKGDPGPPGLDVP
                     GLPGERGSPGLPGAPGLIGPPGSPGIPGRAGVPGFPGVKGEMGMMGPPGPPGPLGTPG
                     RSGAPGLKGDDGMQGQPGLPGPVGEKGGKGEPGLPGPPGPMRPDFLGSKGEKGDPGLP
                     GIPGLSGPKGYQGLPGDPGQPGLSGQPGSPGLPGPKGTPGLPGPPGLTGPPGPKGNIG
                     DMGFPGPQGVDGPPGPPGGPGQPGSPGLPGQKGSKGEPGVSGIGLPGLPGPKGEPGLP
                     GYPGNPGIKGSMGEAGLPGLPGSPGAKGQPGLPGFPGTPGLPGPKGMNGPPGNPGLPG
                     EPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGLSGQK
                     GDGGAPGLPGNPGLPGSKGEPGFQGFPGMPGPPGPPGSPGPSLEGPKGNPGPQGPPGR
                     PGPPGFQGPPGTEGPRGPPGNGGIKGERGNPGPPGQPGLPGLKGDQGPPGLPGNPGRP
                     GLNGMKGDPGLPGVPGFPGMKGPIGVPGSTGPDGEPGLTGPPGPPGLPGPSGQSIVIK
                     GDPGPPGIPGQPGLKGLPGLPGPQGLPGPIGPPGDPGRNGLPGFDGAGGRKGDPGLPG
                     QPGSRGLDGPPGPDGLQGPPGPPGTTSVAHGFLITRHSQTTDAPQCPQGTVHIYDGFS
                     LLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMP
                     MNMEPLKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTS
                     AGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVDMSDMFSKPQ
                     SETLKAGDLRTRISRCQVCMKRT"
ORIGIN      
        1 cagtggaaag cacaggcgga gtgatcctca aattccccag cgccggcggg gagggggcgg
       61 tgcgggagga gagcgaggaa agtagatttg taggacgtga gtgaggaaag tttgcaagtc
      121 ccaacagaag gcaaagtgct ccctagagac tggctttggg gaggggaggg gggagggaag
      181 aacagcttcc ttctcttctt gttctcgctc tccctctctg tcttatttta atccctgcac
      241 tcttcaaaat ctcttccccc aagtgcaccg gcacaatcgg gacactcact gtccctttct
      301 agctctagct ctcttcccaa taacccctca agattatgtc aatcggtctg aagagacctg
      361 ggattctctg cgggcgctga cggagctgcg ggagccagag aagaatgcaa gtgcctggag
      421 tgtgcctggc cgccggctgg ttcttactgg ccctgtgtct gtgggggcag ccgggagagg
      481 ctgcggcctg ccatgggtgt tcttctggat caaaatgtga ctgcagtggt ataaaaggag
      541 aaaagggaga acggggcttt ccaggcttag aaggccatcc aggtttacca ggatttccag
      601 gtccagaagg gcctccagga cctcggggac aaaagggtga tgatggaatt ccagggccac
      661 caggaccaaa aggaatcaga ggtcctcctg gacttcctgg atttccaggg acaccaggcc
      721 ttcctgggat gccaggccac gatggggctc caggacctca aggtatccct ggatgcaatg
      781 gaaccaaggg agaacgcgga tttccaggca gtccaggctt tcccggttta caaggacctc
      841 caggaccacc tgggatccca ggtatgaagg gggagccagg cagtataatc atgtcatctc
      901 tgccagggcc aaagggtaat caaggatacc caggtcctcc tggaatacaa ggtccacctg
      961 gtcccaaggg tgtatcaggg ccaagtggtc ctccaggacc accaggttta atgggccctc
     1021 ctggcccacc aggcccaccg ggaccaaagg ggaatatggg cttaaatttc cagggaccca
     1081 aaggcgaaaa aggtgaacaa ggtcttcagg gtccacctgg tccacctggg cagatcagtg
     1141 aacagaaaag accaattgac ctagattttc agaaaggcga tcagggagtt cccggtgata
     1201 gagggcctcc tggacctccg ggaatacctg gtcctcccgg tcctcctggt ggtgtgaaag
     1261 gtgaaaaggg tgagcccgga gagccaggca aaagaggtaa accaggcaaa gatggagaga
     1321 ctggtcaacc aggaatccca ggtttgcctg gtgatcctgg ttaccctggt gaaccaggaa
     1381 ggcatggtga aaagggccaa aagggtgata ctggcccacc tggaccacct ggatttgtaa
     1441 ttcctacacc tggaactggt gtgactattg gagcaaaagg aaatattggg caacctggtt
     1501 tgcctggaga aaaaggagag cgaggatttc ctggcataca aggtccacct ggctttcctg
     1561 gacctccagg gacagctgtc atgggtcccc ctggtcctcc tggatatcct ggtgaaaggg
     1621 gccagaaagg tgatgaaggt ccccctggaa tttgtattcc tggatctcct ggacttgatg
     1681 gacagcctgg agctcctggc tttccaggac ctcctggtcc tcctggcccc cagttacccc
     1741 cgagtgatga aatctgtaaa gcaggccctc cagggccccc aggatctcca ggtgaccaag
     1801 gactccaagg agagcaagga gtaaaaggtg acaaaggtga tacttgcttc aactgtattg
     1861 gaactggcat ttcagggcct ccaggccaac caggtttacc aggtctccca ggtcctccag
     1921 gatctcttgg aatccctgga gagaagggcg agaaaggaca agctgggaca actggtccaa
     1981 aaggattgcc aggcattcct ggacctccag gtgctccagg ctttccaggg tctaagggtg
     2041 accctggtga tgttctcact cttccgggaa tgaaaggtga aaaaggagaa ttgggttccc
     2101 ctggagctcc agggcttcct ggtctacctg gtagtcctgg aaaggatggt ttgccaggac
     2161 ttcctggccc caaaggagag cccggtggaa tcacttttaa gggtgaaagg ggtcctcctg
     2221 ggaacccagg tttaccaggt ctcccaggaa atatgggacc tacaggccct gttggttttg
     2281 ggcctccagg ccccgtaggt gaaaaaggca tacaaggtgt ggcgggaaat ccaggccagc
     2341 caggattacc aggtcctaaa ggtgatccag gccagaccat cagccagcca ggaaagcctg
     2401 gcttgccagg gaatccaggc agagatggtg aagtgggtct tccaggtgat cctggacttc
     2461 caggccaacc aggcctacca ggaatacctg gtagcaaagg agaaccaggt atccctggga
     2521 ttgggcctcc aggaccacct ggtcccaaag gttttccagg aattcctgga cctccaggac
     2581 ctcctggggc ccctggaaga atgggcccag aagggcctcc tgggttaccg ggctttccag
     2641 gacccaaggg agagccagga tttgggttac ctgggccacc tgggccacca ggattcccag
     2701 gtttcaaagg aacacctggt ccaaaaggtg atcgtggttt accaggacct ccaggtcctc
     2761 caggacacac tggcttggat gggctacctg gaccaaaagg tgatgctgga ccaaatggac
     2821 aacctggccc aatagggcca ccagggctgc caggaattgg tcttcaggga ccaccaggac
     2881 caccagggac tccagggcca ataggccaac ctggcttaca tggaatacca ggagagaagg
     2941 gagatccagg acctcctggg cttgatgttc caggactccc tggagagaga ggtagtccag
     3001 ggctccctgg agcccctggt cttataggac ctccaggatc acctggtatc cctggaagag
     3061 caggtgtccc tggatttcca ggtgtcaaag gcgaaatggg tatgatggga cctccaggcc
     3121 caccgggacc tttgggtact cctggcagga gtggtgctcc tggtcttaaa ggtgatgacg
     3181 gcatgcaagg tcagccaggt ctccctggcc ctgtaggaga aaagggtggt aagggagaac
     3241 ctggccttcc aggtcctcct ggaccaatgc gtccagattt cctgggatca aaaggagaaa
     3301 agggtgatcc tggcttacca ggtattcctg gactttccgg accaaaaggc taccagggat
     3361 tacctggaga cccagggcaa cctgggctga gtggacagcc gggatcacca ggactaccag
     3421 gtcccaaagg tactcctggt ctccctggtc caccaggact taccggacct cctggaccta
     3481 aaggaaacat tggcgacatg ggttttcctg gccctcaagg tgtagatggg cctcctggac
     3541 ctcctggagg tcctggacaa cctggctctc ccgggttgcc tggccagaaa ggaagtaaag
     3601 gagaacctgg agtttcaggc attggtctcc ctggtcttcc tggtccaaag ggtgaacctg
     3661 gtctgcctgg atatccagga aacccaggta tcaaaggttc tatgggcgag gctggtctgc
     3721 ctggcttacc aggaagccct ggagcaaaag gtcaacccgg cctgcccgga ttcccaggaa
     3781 caccagggct tcctggacca aagggtatga atggtcctcc tggtaaccct ggccttccag
     3841 gagaacctgg tcctgtaggt ggtggagggc gtcctggacc accaggacct cctggtgaaa
     3901 aaggcaagcc aggtcaagat ggcattcctg gaccagcagg acaaaaggga gaaccaggtc
     3961 aaccaggctt tggaatccca ggacctcctg gactcccagg actttctggt caaaagggtg
     4021 atggaggagc ccctggcctt ccaggaaatc ctggccttcc aggttcaaag ggtgaaccag
     4081 gctttcaggg attccctggt atgccaggtc ccccaggtcc ccctggttct cctggcccat
     4141 ctttggaagg tcccaaagga aaccctgggc ctcaaggccc tcctgggaga ccaggtcctc
     4201 caggttttca aggtccacct ggtacagaag gtcctcgtgg cccccctgga aatggaggta
     4261 ttaaaggaga gaggggaaat ccaggtccac ctgggcaacc aggcttacct ggcttgaaag
     4321 gagatcaagg accaccaggc cttccgggta accctggccg accaggtctt aatggaatga
     4381 aaggagatcc tggtctccct ggtgttccag gattcccagg aatgaaagga cccattggag
     4441 taccaggctc aactggccct gatggggaac caggtcttac ggggccccca ggtcctcctg
     4501 ggttgcctgg tccttcagga cagagtattg taatcaaagg agatcctgga cctccaggaa
     4561 ttcctggaca acctggatta aaaggtctac caggacttcc aggccctcaa ggtctaccag
     4621 gtccaattgg ccctccagga gatccaggac gcaatggact cccaggcttt gatggtgcag
     4681 gagggcgcaa aggagaccca ggcctgccgg ggcagccagg tagccgtgga ttggatggtc
     4741 ccccaggacc agatggattg caaggacctc cagggccccc gggaaccacc tctgttgccc
     4801 atggattcct catcacacgt cacagtcaga caacagatgc accacaatgc ccacagggaa
     4861 cagtccatat ctatgatggc ttttctctct tatatgtaca aggaaataaa agagcccatg
     4921 gtcaagactt ggggacagct ggcagctgcc ttcgtcgctt cagtaccatg cctttcatgt
     4981 tctgcaacat taacaacgtt tgtaactttg cttcaagaaa tgactattct tactggcttt
     5041 ccaccccaga gcccatgcca atgaacatgg aacccctgaa gggccagagc atccagccat
     5101 tcattagtcg atgtgcagta tgtgaggcac cagctgtggt gattgcagtt cacagccaga
     5161 ctattcagat tcctcactgt cctcaggggt gggactctct gtggattggc tattcattca
     5221 tgatgcatac aagtgcagga gcagaaggct ctggccaagc cctagcctct cctggctcct
     5281 gtttggaaga atttcgttca gctcccttca tcgaatgtca tggacgaggg acatgcaatt
     5341 actatgccaa ttcttacagc ttttggctgg ccactgttga tatgtcagac atgttcagta
     5401 aacctcagtc agagacactg aaagcaggcg acttgaggac acgtattagc cgatgtcaag
     5461 tatgcatgaa aaggacataa catgttgaag aattactggt gtttttaaat gtgattataa
     5521 atatatatat atacatatat ataacaattg tatgtgattc ccaggatgca atgtttcact
     5581 cactctcccc aactttacca ctgctaccac caatggtgct aatatcctct atgaagaaag
     5641 gaacatgctg actagtaacc atgaagattc acaagtacct cagcgatgtg ccagagcaag
     5701 gcctccattc tttcttatga aagaagttgg ggagtgacta tacttctggg ggtccagaat
     5761 aaatttctgg attataagac gaagttcata taatttgcct agttactaaa atggcacatt
     5821 aaaaattcaa tgaagagaag aatcaaaaat actgactgca gtttgaggaa gtattctttt
     5881 tcatggtgct actaatccta atgtaccccc aggtttttaa tagacgagtg ttaatcttat
     5941 tttgctctgt aagtaaaaaa aaaatgtgta tattctgtaa acaacctctt agctcaaaat
     6001 gttgagtcat ttagatgtga tccgggataa gcccctcttc tgaaaaaaat ctatgaaatc
     6061 ttactctata gacagcaaga tattcatggg agagaattta tcttaccatc aagttattac
     6121 tggaatcaaa ttaattggga ttttagccca taaattctta tctgacttaa agaaaacaca
     6181 tcctttaagt aactttgatc agaattttag tggttcatgt aaaacttatc aacttatcat
     6241 atccaatgga gcaatctcct gttttatata ttgtttttgc atactcctga tggttttgag
     6301 aaaaaatgcc aaattaacaa ttcttattat cctggtgctt cccatgtaag aattattctc
     6361 ctgtaggctc atttgtataa gaagacaata tttgcttggt cttctccctt caattagaaa
     6421 aagacaatgg acttttaaaa cctttatatt ttaaacattt tatcaaaata gtcatagaat
     6481 acattatttt cttaactgtc atcttctcac tgaatgtttt ttttaattta ccagtatcaa
     6541 cttaattaaa gatatatgtt ataattatg
//
