LOCUS       XM_039095257            6286 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type IV alpha 2 chain
            (Col4a2), mRNA.
ACCESSION   XM_039095257
VERSION     XM_039095257.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427256.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6286
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6286
                     /gene="Col4a2"
                     /note="collagen type IV alpha 2 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 108 ESTs, 12 long SRA reads, 19 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 116 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:306628"
                     /db_xref="RGD:1308085"
     CDS             187..5310
                     /gene="Col4a2"
                     /codon_start=1
                     /product="collagen alpha-2(IV) chain"
                     /protein_id="XP_038951185.1"
                     /db_xref="GeneID:306628"
                     /db_xref="RGD:1308085"
                     /translation="MDRVRFSASGLPLRGWLLLATVTVGLLAQSVLGGVKKSDVPCGG
                     RDCSGGCQCFPEKGARGQPGEVGPQGYNGPPGLQGFPGLQGRKGDKGERGAPGPTGPK
                     GDVGARGVSGFPGADGIPGHPGQGGPRGRPGYDGCNGTRGDAGPQGPSGTGGFPGLPG
                     PQGPKGQKGEPYALSKEDRDKYRGEPGEPGSVGYQGPPGRPGPIGQMGPMGAPGRPGP
                     PGPPGPKGQPGNRGLGFYGEKGEKGDVGQPGPNGIPSDITLIGPTPSTYHPDMYKGEK
                     GSQGEPGIPGITLKGEEGIMGFPGTRGFPGLDGEKGVSGQKGSRGLDGFQGPSGPRGP
                     KGERGELGPPGPPAYSPHPSLAKGARGDPGFQGAHGEPGSRGEPGDPGPVGPPGLSIG
                     DEDSKRGLPGEMGPKGFSGEPGPSAYYPGPPGADGKPGPQGLPGPAGPPGPDGFLFGL
                     KGSEGRVGYPGPSGFPGGRGQKGWKGEAGDCQCGQVIPGLPGLPGPKGFPGVNGEFGK
                     KGDQGDPGLHGIPGFPGFKGAPGIAGAPGPKGVKGDSRTITTKGERGQPGIPGVHGMK
                     GDDGVPGRDGLDGFPGLPGPPGDGIKGPPGDAGLPGTPGTKGFPGEVGPPGQGLPGPK
                     GERGFPGDAGLPGPPGFPGPPGLPGTPGQADCDTGVKRPIGGGQQVVIQPGCVEGPAG
                     SPGQPGPPGPTGAKGIRGIPGFPGASGEQGLKGFPGDPGREGFPGPPGFMGPRGSKGA
                     PGLPGPDGPPGPIGLPGPAGPPGDRGIPGEVLGAQPGARGDAGLPGQPGLKGFPGEIG
                     APGFRGSQGMPGMPGLKGQPGFPGPSGQPGLSGPPGQHGFPGAPGREGPLGLPGSPGL
                     GGLPGDRGEPGEPGEPGPVGMKGVSGDRGDAGVSGERGHPGSPGFKGMAGMPGIPGQK
                     GDRGSPGMDGFQGMLGLKGRPGFPGIKGEAGFFGVPGLKGLPGEPGVKGNRGDRGPPG
                     PPPLILPGMKDIKGEKGDEGPMGLKGYLGLKGIQGMPGVPGLSGIPGLPGRPGFIKGA
                     KGDIGVPGTPGLPGFPGVSGPPGITGFPGFTGSRGEKGTPGVAGVFGETGPTGDFGDI
                     GDTVDLPGSPGLKGERGVTGIPGLKGLFGEKGAEGDVGFPGITGMAGAQGSPGLKGQT
                     GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPG
                     SPGVDAHGDPGFPGPTGDRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGF
                     PGISPPSNISGLPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGDEGSSGAAGFPGEK
                     GWVGDPGPQGQPGVHGLPGEKGPKGEQGFMGNTGPSGAVGDRGPKGPKGDQGFPGAPG
                     SMGSPGIPGIPQKIAVQPGTMGPQGRRGLPGALGEMGPQGPPGDPGFRGAPGKAGPQG
                     RGGVSAVPGFRGDQGPMGHQGPIGQEGEPGRPGSPGLPGMPGRSVSIGYLLVKHSQTD
                     QEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYY
                     ASRNDKSYWLSTTAPLPMMPVAEEEIKPYISRCSVCEAPAVAIAVHSQDVSIPHCPAG
                     WRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKYS
                     FWLTTIPEQNFQSTPSADTLKAGLIRTHISRCQVCMKNL"
ORIGIN      
        1 cgggcaagca ccggcaaggc acgccggggc cgggaatccg gcgcccacca agcggagcca
       61 ggcaggcctg gccgccagtg tgtcgcgagc caacgcttca gcaggggccc atgagcgccg
      121 gcagcagctc ctgaccccga ggttaggaag ggatcgagcc gagcctagag ctgaaagact
      181 gggatcatgg accgagtgcg gttctcagcc tctggtcttc ccctgagagg gtggctgctg
      241 ctggcgactg tgacagtggg gctcctggct cagagcgtct tggggggggt gaagaagtcg
      301 gatgtgccct gcggagggag agactgcagt gggggctgcc agtgcttccc ggagaaagga
      361 gcacggggtc agccagggga agtgggcccc caggggtaca atgggccccc agggttgcaa
      421 ggattcccag gactacaggg ccgcaaagga gacaagggtg aacggggagc tcctggacca
      481 actggaccaa aaggagatgt gggagcgaga ggcgtctctg gattccccgg tgcagatgga
      541 attcctgggc acccagggca aggtggaccc cgtggaagac cgggctacga tggttgcaat
      601 ggaaccagag gagacgccgg gccacaggga ccctctggaa ctgggggctt ccctggcctc
      661 cctgggcccc aaggacccaa ggggcagaaa ggcgaacctt acgcactctc gaaagaggac
      721 cgtgacaaat atcggggtga gcctggagag cctggctcgg tcggctacca ggggcctcct
      781 ggccgcccag ggccaatagg acagatgggt cccatgggag cacctggaag accgggacca
      841 ccaggacccc ctggacccaa aggacaacca ggcaaccgag gactgggttt ttacggagag
      901 aagggtgaaa agggtgacgt aggacagcca ggacccaatg ggatcccatc tgacatcaca
      961 ctcattgggc ccacgccatc aacgtatcac ccggatatgt acaagggtga aaagggaagt
     1021 caaggagagc cagggatacc cggcataacc ttaaaaggcg aggaaggcat catgggattc
     1081 ccaggaacac ggggttttcc tggccttgat ggagaaaaag gagtctcagg acagaaagga
     1141 agcagaggcc tggatggttt ccaaggcccc agtggacccc gaggacccaa gggagaacgg
     1201 ggagaactag gacccccagg acctccagcc tactcacccc atccatccct ggcaaaaggt
     1261 gccagaggtg acccaggatt ccaaggtgct catggggagc caggaagccg aggcgagcca
     1321 ggagaccctg gacccgtggg gcccccaggc ctgtccattg gagatgaaga ttcaaagaga
     1381 ggccttccag gggagatggg acccaaaggc ttctcgggag agccaggacc ctcggcatac
     1441 tatcccggcc caccaggagc tgatggaaaa ccaggtcccc aaggactccc cgggcccgca
     1501 ggcccacctg gaccagatgg cttcctgttt ggcctgaaag gatcagaagg gagagtgggt
     1561 taccccgggc cttcaggttt cccaggaggt cgagggcaga aaggatggaa aggtgaagct
     1621 ggagattgcc agtgcggcca ggtcatcccg ggtctcccgg gactgccggg acccaaaggt
     1681 tttcctggcg tcaatgggga gtttggaaag aaaggtgacc aaggagaccc aggcctgcac
     1741 gggatccctg ggttcccggg attcaaggga gccccgggca tcgctggagc tcctggaccc
     1801 aaaggagtaa agggagactc tagaacaatc actaccaaag gtgagcgagg acagccaggt
     1861 atccctggtg tgcatgggat gaaaggtgat gacggtgtcc cgggacgtga cgggctggat
     1921 ggattccctg gcctgccggg tcctccgggc gatggcatca aagggcctcc aggggacgca
     1981 ggtctccctg gcacacctgg aaccaagggc ttcccaggag aagtgggtcc tccaggacag
     2041 ggcttacccg gcccgaaagg tgaacgtggt ttccctggag acgccggact gcctggacct
     2101 ccaggcttcc cgggtcctcc aggtctccca ggaacaccgg gtcaggcaga ttgtgacacg
     2161 ggtgtgaaaa gacctattgg aggcggccag caagtggtca ttcagccagg ttgtgttgaa
     2221 ggccctgcag gatcacctgg ccagccagga cccccaggtc ccacaggtgc caaaggcatc
     2281 cgaggcatcc caggattccc aggagcttct ggagaacaag ggctcaaggg ctttccagga
     2341 gacccaggcc gagaaggttt cccagggccc ccagggttca tgggaccccg aggatccaaa
     2401 ggtgccccag gcctccctgg cccagatgga cccccaggcc ccattggact tccagggcca
     2461 gctggacccc ctggggacag aggaattcca ggagaagtgc taggggccca gcctggggcc
     2521 cggggagatg ctggactacc aggacagcct gggctaaaag ggttcccagg agaaatcgga
     2581 gcacctggat tcagaggaag ccaagggatg cccgggatgc cagggctcaa aggtcagcca
     2641 ggcttcccag gaccttcggg acagccagga ctgtctgggc ccccaggaca acatggattc
     2701 ccaggagctc ctggacgaga ggggcctttg gggctgccag gctcccctgg ccttggaggt
     2761 ttgcctggag acaggggtga gcctggtgag cctggtgagc ctggccctgt gggcatgaaa
     2821 ggtgtgtctg gggacagagg cgacgccggt gtgtcaggcg agcgtggtca tcctggaagc
     2881 cctggattta aaggaatggc ggggatgccc ggtatccctg ggcagaaagg cgatcgaggg
     2941 tcacctggaa tggacggctt ccagggcatg ttgggactta agggaagacc cggcttccca
     3001 ggaatcaagg gagaggctgg attcttcgga gtccctggtt tgaagggcct gcctggcgag
     3061 ccaggtgtta aaggaaaccg aggggatcgg ggccccccag gaccacctcc tctaatcctg
     3121 ccggggatga aggacatcaa gggagaaaag ggagatgaag ggccgatggg tctgaaaggc
     3181 tacttgggct taaaaggcat ccaaggaatg cctggggtcc ctgggctctc tggaatccct
     3241 gggctacctg gaaggcctgg cttcatcaaa ggagccaagg gagacatcgg agtcccaggc
     3301 acaccaggtt taccaggatt tcctggggta tctggccccc ctggaattac cgggttccca
     3361 ggattcacag gaagccgggg cgagaagggt actccaggag tagcaggggt ttttggagag
     3421 actggcccca ccggggactt tggtgatatc ggagacactg tggacttacc aggaagccca
     3481 ggcctgaagg gggaacgggg agtcaccgga atcccaggtc tcaagggact ctttggagag
     3541 aaaggagctg agggtgacgt tggatttcct gggataacag gcatggctgg ggctcaaggc
     3601 tctcctggac ttaaaggaca gacaggcttc ccggggctca cagggctgca agggccacag
     3661 ggagagcccg gacggatcgg aatacctggt gacaagggtg atttcggctg gccaggggta
     3721 cctggtagac caggcatccc gggaatccga gggatcagcg gattacatgg cctgccaggc
     3781 accaaaggct tccctggatc cccaggtgtc gatgcccatg gtgacccagg gttcccaggc
     3841 cccactggag acaggggtga ccggggagag gccaacacac ttccaggccc tgtaggagct
     3901 ccagggcaga aaggggagca gggaatccca ggggaacgtg gcccagtcgg aagcccagga
     3961 cttcagggtt ttcctggtat ttctccacca tccaacatct ctgggttacc tggtgatgtg
     4021 ggggcaccag gaatatttgg cttgcaaggc taccaaggcc ctccaggacc accggggcca
     4081 aatgcacttc ctggaatcaa aggagatgag gggagctcgg gagctgcagg tttccccgga
     4141 gagaaaggat gggttggtga cccagggccc cagggccagc ctggtgttca cggtcttcca
     4201 ggggagaaag ggcccaaggg tgagcaagga ttcatgggca acactgggcc ctctggggcc
     4261 gtgggtgaca gaggccccaa aggacccaaa ggtgaccaag gattcccagg tgctcctggc
     4321 tctatgggat ccccaggcat cccgggcatc ccccagaaga ttgctgtcca gcctgggacc
     4381 atgggtcccc agggcaggag aggccttccc ggtgcactgg gagagatggg gcctcagggc
     4441 cctcctggag atccaggttt ccgaggggcc cccggcaagg ccggtcccca gggcagaggt
     4501 ggtgtgtctg ctgttccagg gttccgggga gaccaagggc ccatgggaca ccagggtccg
     4561 attggccagg aaggggagcc aggccgtcca gggagcccag gcctgccagg gatgccaggc
     4621 cgcagcgtaa gcattggcta cctcctggtg aagcacagcc agacggacca ggaacccatg
     4681 tgccccgtgg gcatgaacaa gctctggagt gggtacagcc tgctgtattt cgagggccag
     4741 gagaaagcac ataatcagga cctggggctg gcgggctcct gcctggcacg cttcagcacc
     4801 atgcccttcc tgtactgcaa tccgggtgac gtctgctact acgccagccg caacgacaag
     4861 tcctactggc tctccaccac ggccccactg cccatgatgc ccgtagctga ggaggaaatc
     4921 aaaccctaca tcagccgctg ttcggtgtgt gaggctccgg ccgtggccat tgctgtccac
     4981 agccaagatg tctctatacc ccactgcccc gctgggtggc ggagtttgtg gatcggatat
     5041 tcattcctca tgcacactgc agctggggac gaaggcggtg gccagtcact ggtgtcgcca
     5101 ggcagctgtc tggaggactt ccgtgcaaca ccatttatcg agtgtaacgg gggccgtggg
     5161 acctgccatt acttcgctaa caagtacagc ttctggctga ccacaattcc tgagcagaac
     5221 ttccagagca caccatccgc tgacacgctc aaggccggcc tcatccgcac ccacatcagc
     5281 cgctgccaag tgtgcatgaa gaatctgtga gccgtccacc ctgccggcca gcagctgtgt
     5341 ggggaggcca ctttggtgct tatccttttg tatttgtttc aattttgttt gagacattgt
     5401 ctcacttttc atccccgtct agcctggaat taagtaaccc aggctggcct ccaatttgtg
     5461 gcaaacctcc tgcctcagct tcccagatgc tgggattacg ggcatgggcc accacaccca
     5521 gcttggtgct tactcttaac ttattacctc agatgccgac cccaaagttg atcttagtat
     5581 ttttctttaa aaacaaaact accaaagcaa ttctgcacta gcactcatac caaccatctg
     5641 tcagcaaatg ggcactactt cctctgggct ctagcagcca tgggccacag ccctgctaac
     5701 acccacctcc taaagccaac acctcggagc agcccatgga cccctcaccc tgtaggacat
     5761 aaacatcatg ccaccaggtg tacccaacaa tagctgtctg tgtgccctgc ttccactggc
     5821 agcagggggc tcagcttcct tcagtcttgt cctagaatgg ggccgagtct aagggacagc
     5881 agagactgtg gccagtgata gctggggctc actgacacct gctcccaccc aaggatgcat
     5941 gcagtgtgct ctatctcgtc ctggtttctt ggcagagggg aaagtggcac ttccaaatcc
     6001 atagccgcca cctcataagt ccccatatgt tggcccctgc ctttctaagc ccctaacagt
     6061 agctggcaca tggctctgtc tctagccaaa ccccagggaa ggagacatct ctctagtcct
     6121 caccagcatc ggttggaaga tactctaagc aagtcattca cagtggtgtc ctacaacccg
     6181 tgtcacccca aacccccccc acacacacac acacaacctt gttccctgca gccagctgtt
     6241 ctgtgacttt cctatgtaac accacaaata aaagatattc taagta
//
