LOCUS       NM_001271268            2737 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus collagen type XXVI alpha 1 chain (Col26a1), mRNA.
ACCESSION   NM_001271268 XM_001064529 XM_003751159 XM_003752577
VERSION     NM_001271268.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Soteriou,D., Iskender,B., Byron,A., Humphries,J.D.,
            Borg-Bartolo,S., Haddock,M.C., Baxter,M.A., Knight,D.,
            Humphries,M.J. and Kimber,S.J.
  TITLE     Comparative proteomic analysis of supportive and unsupportive
            extracellular matrix substrates for human embryonic stem cell
            maintenance
  JOURNAL   J Biol Chem 288 (26), 18716-18731 (2013)
   PUBMED   23658023
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Manabe,R., Tsutsui,K., Yamada,T., Kimura,M., Nakano,I., Shimono,C.,
            Sanzen,N., Furutani,Y., Fukuda,T., Oguri,Y., Shimamoto,K.,
            Kiyozumi,D., Sato,Y., Sado,Y., Senoo,H., Yamashina,S., Fukuda,S.,
            Kawai,J., Sugiura,N., Kimata,K., Hayashizaki,Y. and Sekiguchi,K.
  TITLE     Transcriptome-based systematic identification of extracellular
            matrix proteins
  JOURNAL   Proc Natl Acad Sci U S A 105 (35), 12849-12854 (2008)
   PUBMED   18757743
REFERENCE   3  (bases 1 to 2737)
  AUTHORS   Leimeister,C., Steidl,C., Schumacher,N., Erhard,S. and Gessler,M.
  TITLE     Developmental expression and biochemical characterization of Emu
            family members
  JOURNAL   Dev Biol 249 (2), 204-218 (2002)
   PUBMED   12221002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Feb 11, 2021 this sequence version replaced NM_001271268.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.39595.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-311               JAXUCZ010000012.1  25429396-25429706
            312-434             JAXUCZ010000012.1  25466793-25466915
            435-532             JAXUCZ010000012.1  25478491-25478588
            533-594             JAXUCZ010000012.1  25554633-25554694
            595-751             JAXUCZ010000012.1  25559719-25559875
            752-850             JAXUCZ010000012.1  25562312-25562410
            851-1003            JAXUCZ010000012.1  25562988-25563140
            1004-1087           JAXUCZ010000012.1  25565085-25565168
            1088-1140           JAXUCZ010000012.1  25567319-25567371
            1141-1176           JAXUCZ010000012.1  25568302-25568337
            1177-1224           JAXUCZ010000012.1  25569556-25569603
            1225-1309           JAXUCZ010000012.1  25572822-25572906
            1310-2737           JAXUCZ010000012.1  25573778-25575205
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..2737
                     /gene="Col26a1"
                     /note="collagen type XXVI alpha 1 chain"
                     /db_xref="GeneID:685612"
                     /db_xref="RGD:1591401"
     exon            1..311
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..1470
                     /gene="Col26a1"
                     /note="collagen alpha-1(XXVI) chain; collagen, type XXVI,
                     alpha 1"
                     /codon_start=1
                     /product="collagen alpha-1(XXVI) chain precursor"
                     /protein_id="NP_001258197.1"
                     /db_xref="GeneID:685612"
                     /db_xref="RGD:1591401"
                     /translation="MKLVLLLPWACCCLCGSALATGFLYPFPAAALQQHGYPEQGAAS
                     PGNGYSSRRHWCHHTVTRTVSCQVQNGSETVVQRVYQSCRWPGPCANLVRTLIRPTYR
                     VSYRTVTALEWRCCPGFTGSNCEEECMNCTRLSDMSERLTTLEAKVLLLEAAEQPAGP
                     DNDLPPPQSTPPTWNEDFLPDAIPIAHPGPRRRRPTGPAGPPGQMGPPGPAGPPGSKG
                     DQGQTGETGPVGPPGLLGPPGPRGLPGEMGRPGPPGPPGPAGSPGLLPNSPQGVLYSL
                     QTPTDKENGDSQLNPAVVDTVLTGIPGPRGPPGPPGPPGPHGPPGPPGAPGSQGMVDE
                     QVVAKPSGEPSVKGEEDKATTTEGEGVQQLREALKILAERVLILEHMIGVHDPLASPE
                     GGSGQDAALRANLKMKRGGPRPDGILAALLGPDPAQKSPDQAGDRK"
     exon            312..434
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            435..532
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            533..594
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            595..751
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            752..850
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            851..1003
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1087
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1088..1140
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1176
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1224
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1309
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..2737
                     /gene="Col26a1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacgactttc acctcagacc ctgacttcac accatcactg actggccctc tgctctccag
       61 cctggggcaa cagggtcagt ccagccgtcc cgggcactcc tgatcgtccc ccggctcccg
      121 ggaccctaag tccccgcggg aaagccgcgc aaaatgaagc tggttttgct gttaccatgg
      181 gcgtgctgct gcttgtgcgg ttcagcgctg gccaccggct tcctctaccc attcccggca
      241 gcagccttgc agcagcacgg ctacccggag cagggcgccg cctcccccgg caacggctac
      301 tcgagtcgcc ggcactggtg ccatcacacg gtgacaagga cagtgtcctg ccaggtgcag
      361 aacggctccg agacggtggt ccaacgagtc taccagagtt gccggtggcc tgggccctgt
      421 gccaacctcg tgaggactct cattagaccg acctaccggg tttcttaccg caccgtgact
      481 gcgctggagt ggaggtgttg ccctggattt actggaagca actgtgagga ggaatgtatg
      541 aactgtaccc ggcttagcga catgagtgag cggctgacca cgctggaagc caaggttctc
      601 ctgctggagg cagccgagca gcctgcaggt ccagacaatg acctgccacc cccgcagagc
      661 accccaccaa cctggaacga ggacttcctg ccagatgcca ttcctattgc ccatccaggg
      721 ccccggagga gaagacccac aggtccagct ggacctccag gacagatggg accacctggg
      781 cctgcagggc ctccaggttc caaaggtgac cagggccaga caggagagac aggcccagtg
      841 ggacctccag gtctcctggg accaccaggg ccacgcgggc ttcctggaga gatgggacgc
      901 cctggtccac caggccctcc tggcccagca ggcagtcctg gcctcttgcc aaacagtccc
      961 caaggcgtcc tctactccct gcagacacct acagacaagg agaatggaga ctcccagctc
     1021 aaccctgctg ttgtagacac agtgctgact ggcatcccag gtccccgggg tcccccggga
     1081 ccccctggtc ccccaggacc acatggtcca ccaggacccc caggagcacc tggatcccag
     1141 ggtatggtgg atgagcaggt tgtggcaaag ccatctggtg aacccagtgt gaagggagaa
     1201 gaggacaaag ccaccaccac agagggagaa ggcgtgcagc agcttcgaga ggccctgaag
     1261 atcctggcag agagggtcct tatcctggaa cacatgattg gggtccatga tcccctggcc
     1321 tcccctgagg ggggctctgg gcaggatgcg gccctgagag ccaacctcaa gatgaagcga
     1381 ggaggtcctc gacctgatgg catcctggct gccctgctgg gccctgaccc tgcacagaag
     1441 agcccagacc aggctggaga caggaagtaa gaatccctct ctcctgtgcg agcccagccc
     1501 tgcagctgaa cagcggttgt atcctgaaga ctccctatgt ggaactgggc atcaggcagg
     1561 gacagttgtg gaggactctg ggagtctggc atccctgagg agagatggtg cttccaaggg
     1621 gcagggccca gtgctaacta gcaccccgac agaacttttc ttttgcccct gtcccctacc
     1681 tcccactccc gctgagacgg ggtctgggtg ggctgcgtgg aggtaggaga ctaatcacaa
     1741 ttctcaatgg ctgagcccct gctctgtcag ggtctgggcc agctccggtg ctttctctat
     1801 agtgtctcat ttaaccctta aaaggtaggt ctgagatccc cactcagctt ggggactgat
     1861 tatagaggat acacacgacc cagatcctgg atgtgggggt gtggggggag ggtagatttt
     1921 aacccaggcc tcactgttgc tgaagccatg acctacaacc ctctacatga ggtgtgtggc
     1981 ccctcagatt cctgaggcag ctgggctgcc gggaggctgg ggcacctgga aagacatcag
     2041 gacactacag aactttgggc ctgcctctct tcctctggtc actttctagg gctgggtagg
     2101 ggccaacttc caagagggga gtttggagcc atgaggaagg gtctctgaga atgagaaggg
     2161 ccaaatctgt tcggtaatgc ttcctaatgt cttccagtct agctgagccc actgtcctta
     2221 cctgccctcc cccatggaga aggaaggagc atttaatgag accatccact cagtgtggga
     2281 cctacaacct ccatcatggc cactcttcca tgactatctc tagagccctg ctatctgatg
     2341 gatgacacaa atccgtgtcc cttttacaaa cagcctatac cctaggcttg ctagcggccg
     2401 tgtccacaca ccttgaggct ggggtcctag caggttccac agaagaacta ttccacagcc
     2461 ctgaagacct cactgactgg tgcttggtct cttatgaccc acataacctg gtgctcctct
     2521 aacctggcct tggccccagc actcagagga tagaaaggac cacccttggg tatgtctccc
     2581 tgcctggcag gagtgaccgt ccctaaagtt cttggtgctt atgcaaggct ggaacctgat
     2641 cccctgggcc ctgtaggctc tccctgagct attctctgtc tccaagaggt gatcagagac
     2701 ctgtgatgtt atttcaaata aaggtgctct ctccatg
//
