LOCUS       XM_039103837            8023 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type XXV alpha 1 chain
            (Col25a1), transcript variant X1, mRNA.
ACCESSION   XM_039103837
VERSION     XM_039103837.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8023
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8023
                     /gene="Col25a1"
                     /note="collagen type XXV alpha 1 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 16 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:687064"
                     /db_xref="RGD:1590105"
     CDS             1193..3256
                     /gene="Col25a1"
                     /codon_start=1
                     /product="collagen alpha-1(XXV) chain isoform X1"
                     /protein_id="XP_038959765.1"
                     /db_xref="GeneID:687064"
                     /db_xref="RGD:1590105"
                     /translation="MLVKKLAGKGGGRESGSEDPRPLGQRCAGTMPSCAALATLLSVV
                     AVVFCLYLGVKTNDLQARIAALESAKGTPSFHPLPDTMDELKAMVQEKVERLLAQKSY
                     EHMAKIRIAREAPSECNCPAGPPGKRGKRGRRGESGPPGPPGPKGDKGEQGDQGPRMV
                     FPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVP
                     GEPGKPGEQGLMGPLGPPGQKGSIGAPGTPGMDGQKGEPGLPGAAGQSGLPGPKGEPG
                     NEGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIK
                     GEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGDPGAPGPKGKQGESGARGPKGS
                     KGDRGDKGDSGALGPRGPPGQKGDPGATEIIDYNGNLHEALQRITTLTVTGPPGPPGP
                     QGLQGPKGEQGSPGIPGVDGEQGLKGSKGDMGDPGMPGEKGGIGLPGLPGANGVKGEK
                     GDSGLPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGD
                     RGPLGLPGASGLDGKPGSRGADGPIGPHGPAGPKGERGEKGAVGEPGPRGPYGLPGKD
                     GEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMP
                     GCWQK"
ORIGIN      
        1 cggttggaga atctgctgca aggcgtggga aggaagggaa gtagggaagg taccctgcag
       61 acgtcagcca gacacttcgc ctctgggcat gtgggaacga actgagggag gaaggaaacg
      121 tcgcacaagg gagagacgga ggagcttctg cggctgcctt tgagagagga tcggagagtt
      181 ggagcattct gcttccgttc ttcccttcag gaggccattt ctccattttt tttaacccaa
      241 atagagaggg ggcgctgggc taagccagta taagtcactc cgcacagcag acctcaattc
      301 ggcccttagt aaggccagag aggtggcctt agggggacgc tgaagttact cggtggtggg
      361 agggagaagg gtctccaagc tcctctccaa tcacagccgc tgctgtagct atttgcatat
      421 attatgctaa tagaacctcc cgctccgctc ccacccgcgc tcccgcccct tcgtgggtcc
      481 aggcgggctg ggcgaaggtg aatatattat gctaataagg aggctcctgc gggagggggc
      541 ggtccgcgct tcaggcgcgc gcgcactgtc tcactcgaga gcatcccggg gtatttaagg
      601 ctcacatgcg cgggtctgcg gagatacttt cggggcctcg cagctcgcgg tcgctgcttg
      661 ggtcactcgg ttcccctctt ttctctattc ctttaccacc tacgggggcc gcgctctcgc
      721 tgggtctctg catttccttt tcttttcggc cttgaactga tccaggtggg agacaggtcc
      781 gcgggtggaa agaggtagag ataggcaggc aggctcaaca ggtcggagca gggagagggg
      841 ctctcggacc ctgcgcctcc gcgcggggga ccactaagga ggtgtcggat tttggaaggt
      901 tagaagagct gccctggtgg gtttcatttc agctgtgacc cccacactcc cggcgccaca
      961 cagtcccctg ccggagggtg cttttcactc ctagctggaa ggggagaagg aatctggagg
     1021 acggtccacg ccgctgatcc ggacgccgag ccacgcgcag gtccatctcc aaccaactag
     1081 ttgtgcagct gcagggactg aactttgcag gaaccagccc ttcccctcat tctaagatta
     1141 ttggaggagg tagagagtgg aaggcgtagc ggaggccggc gactctgcca caatgttggt
     1201 gaagaagctt gcagggaagg gagggggacg agagtctgga tctgaagatc cgcgcccctt
     1261 gggacagcgt tgtgccggca ccatgccctc gtgcgcggcc ctggcgaccc tcctgtcagt
     1321 ggttgctgtg gttttctgtt tgtatcttgg ggtgaaaacc aacgacctcc aggcgaggat
     1381 tgctgctctt gaatctgcta aagggacccc ttccttccat ccgctgcctg acaccatgga
     1441 tgagctgaag gcaatggttc aggagaaagt ggagcggctc ttggctcaga aatcctatga
     1501 acatatggct aaaataagaa tcgccaggga ggcaccttca gagtgcaact gcccagcagg
     1561 tcctccaggg aaacgaggga agagaggccg aagaggagaa tctggtcctc ctggccctcc
     1621 tggtccgaaa ggtgataagg gagaacaagg tgaccagggg cctcggatgg tgtttcctaa
     1681 aatcaatcat ggctttctgt ctgctgatca gcagctcatt aaacgccggc tgattaaggg
     1741 tgaccaagga caggcagggc ctccaggacc cccaggccct cctggtccaa gaggtccccc
     1801 tggggacaca ggaaaagacg ggccccgagg aatgccagga gtacccggtg aaccaggaaa
     1861 accaggagaa caaggcttga tgggacctct ggggcctcca ggacaaaagg gttccattgg
     1921 agcacctggg accccaggca tggatgggca aaagggtgag cctggattac ctggagcggc
     1981 cggtcagagt ggactaccag gacccaaggg ggaacctgga aacgaaggag aaaagggaga
     2041 tgctggagaa aatggtccca aaggtgacac aggagaaaag ggtgaccctg gatcgtccgc
     2101 tgcaggaatt aagggagaac ctggagaatc tggtcgtccg gggcagaagg gtgaaccagg
     2161 gctgcctggg ctgcctggac ttccggggat aaagggagaa ccaggcttca ttggtcctca
     2221 aggagaacca ggcttaccag ggttaccagg aacaaaaggc gaacgtgggg aggcagggcc
     2281 tcctggaaga ggtgaacgag gggatcctgg agccccgggg ccaaagggga agcaaggtga
     2341 atcaggagct agaggcccca aggggtcaaa gggtgatcgt ggagacaaag gagactctgg
     2401 agctctggga ccacggggtc ctcctgggca aaagggagat ccaggagcca ctgagatcat
     2461 agactacaat ggcaacctcc atgaggcctt acagaggatt accaccttaa ctgtcacggg
     2521 cccgcctgga cctcctggac ctcaaggact gcaaggacca aagggtgagc aaggctctcc
     2581 aggaatcccc ggagttgatg gagaacaggg actcaaaggc tcaaagggag acatggggga
     2641 cccaggtatg ccaggtgaaa aaggaggaat cggacttcct ggattgccgg gcgccaatgg
     2701 agtaaaagga gagaaaggag actccgggtt gccgggtcct caggggcctt ctatcatagg
     2761 cccaccaggc cctccaggtc cccatggccc acctggtccc atgggacccc atggacttcc
     2821 tggaccaaag ggtgaaccag ggttaaatgg tgttaaagga ttgaagggtg aaccaggtca
     2881 aaagggtgac agaggacccc ttggtcttcc aggagcatct ggcttagacg gaaagccagg
     2941 atcccggggt gcagatggtc ctataggacc ccatggccct gcaggtccca aaggagaaag
     3001 aggagagaaa ggagctgtgg gagagcctgg accccgaggg ccctatgggc tacctggcaa
     3061 agatggagag cctggtcttg atggcttccc tggtcctcga ggcgagaagg gtgacctggg
     3121 agaaaaggga gaaaagggat tccgtggcgt taagggggaa aagggggagc cgggccagcc
     3181 tggcctggat gggctggatg ctccttgcca attgggaccg gatggattac ctatgcctgg
     3241 atgctggcaa aagtgatgaa tctgaccttc caagcatgaa gttgtgtata taatggtcca
     3301 ccttttatat ttatagttga aaaactgaag tgcagatttt gcaagtgtga ggtctgctca
     3361 cccaacacac tgcttctccc tgtccacagt agcacacttg tccatctttc ctcacccccg
     3421 aagtaaggca gttcccggaa gtgaggaacc tgcaggaaat atagtgtctc tattttatgt
     3481 gaacatatgt gtttatacgg acatcagtga tagagaacaa ttgattgctt ttgctatttt
     3541 cctatttggg gcttgttcat tgcatggaca gagagcacca tgaaatagtt tacatgaaat
     3601 cgtgaccaaa tatggactga aagctatgaa catgcgtcac acattccctg gtagcattca
     3661 ttcattcatg cctacaccac ctactgaaac tgactaaaag cagcatgacc gtgtgccaaa
     3721 cctgcttgcg ctagtgcaga tgcttgcatg ctgcccagtg agttctctga ctacatctga
     3781 gctcttgttc cttttgtcgt ctcaaggggg ttacaccgtg gcttattgcc aaaaagagat
     3841 aagttggcgg agagcacaca cacacagttg gtcttgtatt ttgagggagt tgcagtcccg
     3901 actgcagatc cacagctcct gatcttgtgg gctcctgtga acaccttggt tgaaatacca
     3961 aagggttagg ctgatggcgg ccactagttt tcctccggct gcgcttggca gcgaagacgt
     4021 gggaagagga ccggttcagc atcctgcact gtctttcacg tgaccgagtt gggaggagct
     4081 ttacaaacgc gaacacccag agcagcagaa attggttttc tacatgatct gatcagactt
     4141 cccacggttg ttgatgcttt gggagaatgt cagaggtatg cagccgtgtt ttggagacag
     4201 cagagtcttg aaacggaggc ccctgtttgt gcagattgaa aggtgcggac ctaccagagc
     4261 tgctgaagag agagagagac tgcgtcccaa gatgggatca gacagaataa gccgtgctac
     4321 gaatgcagac tttaccaaaa gtggtcggaa agtgtccctt ccttcctttc ttcccaggtt
     4381 gatccatacc aaacgttttt ttctacaagt ttgagaaaca aaacgtagtt tccagtttct
     4441 ctcatacttt ctattttctt agtccaggaa cagaaaccat ttatttcagt ttgggcctca
     4501 tgggttttta aacaatattt ttagaaaagt tttcagatca caatttgaat ccaaccgcaa
     4561 aaaataagct cttcgcatct cttttttgtt ggttgtttgt ttgagataat tgaagaaatt
     4621 agagggagat tccatttttg gcttaactgt tgtaaagtat gaaggttaag aattgtttca
     4681 ctacattttt tatttacatt gacaatgtac ctgtcagtta ttgtaaagtc aaatttttat
     4741 tacacttggt agcatgaact tgcttcttct aagctttttt tttctatatc gaagtttatt
     4801 tctcactttt gtttttacat ttctaagtgt cgtatacaca gaccaaatct gagacctcag
     4861 aaagctctga agtacagttg ccaaaaaaac gagtctttgt ttttattgac ttgctcaaaa
     4921 ctcacccgag tcttagcctg ggcatttctt tgcatggtga agacttcacg acatgttttg
     4981 aaataactta tcctaagtgg aagggttgcc tcaaagaaga agcaccctca gtgggaaccg
     5041 ccattctggt agcccataag agaatttcat ttccctcagt gattaaatgc catttttatg
     5101 ggaatgtttc tggttctggg cttagatatt taccaccaga ggggaaatca gttcatgctt
     5161 gggataacag taatgaagct acagcttcga cacagaccct aagatatcgt tcatgttgtg
     5221 taaccaaatg cttgatcatg caaaatggtg tcttcttttt cttctttatg tcatttctga
     5281 gattagaatt taatatttct gataacattc cacactccta agccaattta gtattttttt
     5341 taatggagac tattttctaa caatttcttg tatggtgtag ttagggtaag gtatttctca
     5401 atatatgaaa caattcgtct taaatctttt gaggggcaaa agtgagccca agactacaca
     5461 ttatctccag gaaagaaaac cagaacaact atagagtctt gaggccatat atcctcttat
     5521 cctcctttct gtttctccac ttgaaagagg tttatttaaa acgtaaagag attcgaatga
     5581 gactagctca acaaaagaag caggaaagca ctggacagag ccctggaaag ataccgccta
     5641 gactgtgtgt gcatctgggg tctggcttgt aagacacatt taaaggaata tgtaaacgtc
     5701 catttcatgt acagactgaa gggacgatgg tggtcctctg tgcttagtgg attgctaggt
     5761 taaccaccat gagttagcct taaacttcgg gctcttaaga catcattaat catccatttt
     5821 atcatcaagc tgaataattt ccaaatgagt gaataataag tcatcattgc tagtacatag
     5881 gttaatagat agcattcttt cttataaaga cttctttagg agaattaaga aaaaaattga
     5941 agcacccatg ggaaatacat caaggtcagg tttttgggtt tttttttctt cagagacagc
     6001 caacctctct aaaggatggc attgttgtgt cctttgcagt gttttccatt agtattgttg
     6061 gtgctgataa gtcttctttc tttttatctt tatctttgaa tggataattt catttctctg
     6121 tttaatggcg ttcccgagct attagtgcac agtttcattt tgggagttca tgaatttgtt
     6181 gtaaatgtag ttcagtggcc agcctttcct gatgtgaacc agccttccga ggctccccgt
     6241 gttctttgct cacgttatac gccacatgcc tttatcagtt cgcattgatt gcctcccctt
     6301 ttgagtcact cgcctttcag cttccatagc cggtgttcaa gaagtctgca tgacacatag
     6361 gtcacctggt aaatggctgt cctttcccgc catcaaaggc agccttggag gattcttcct
     6421 tgccctgtta ttttatggag agcattggaa tgcctcccct tcctaccagt acaaagctct
     6481 gtgtctttgt atctacactc tgtgcatatg atgcgttagt ggggcagttt acatgtatga
     6541 catgtacttt gtgtatatat ctgctagctt aagaaaatgg tcagatcacc attctgcacc
     6601 tatgggtaag ctgtccttgg tgtcttacat gtttggcact caggaaacac gcctaaagta
     6661 tttccaagta tgcttttaaa atattgctag caaagcatta aaaaaaaata acgtttttaa
     6721 tccccgccac ctgctatacc tgtcttactg tagtttggca tcttctcata aggggttgtg
     6781 agaaacttgg atgctgacat ttgagacctt tattttcttc ctttcttgat gttcaaatta
     6841 tttaatgcta ctaagacaaa gaaaacaaaa gctttgctat cttacgaggt tcgtgggagg
     6901 tttattatcc cagaaatcat gaggaggtca gatctggtgc tggcgattga cagccctgag
     6961 cagttataat tctgccaagc tcccttagct gtaaaagtct tttgtctttt acagaaagga
     7021 aacaggtctg ttttcctaac ctatcttctc tttcatcttc tttttgcccc ttgttttatg
     7081 cccagagaca ctcctctcac ttagattgct ggtgaattta tttagggttt tccttacttt
     7141 tatactaata aacattttaa tgactttttt tttccactaa aatgtatgag ctgcctcccc
     7201 tgcttattgg cagagtgatt tggagacagg aggatggacc ccgttgtgct tgatttctta
     7261 acaagagaaa aataccaaca tttttcaaaa tgagttgaca ttctgaccca tctcagaaat
     7321 actaatgagt cggattcaag gaggaacgtc tcccatattg ctgacatctg ggtggatatt
     7381 ctttacaatg ttgtaaatgt ttcattaagc tggacatttt aaaaaagatg tatgtatctg
     7441 atttatcttt tggaaatatt atatttttat ttgtattttt tacattttaa agttcatctc
     7501 tatgtgcagc tatttttata ttgccaaaaa ctcacataaa tacatagaaa gaggggaatg
     7561 ggggggtggc acatgtaacc ttgtgtgtag ggttttattt taatgtttta tgggtcagtc
     7621 tcgtgttact tggttattct aagaatgcgt tgtatctttt cactgtacat atggcacaaa
     7681 cttgattatc tcagtagtgt aaatatttaa aagattgatt ttttcccgtt tgatttttta
     7741 tttcagttgt aatttttcca actgtcatta ccgaatcaaa ggcctgtgaa ggttttgatt
     7801 tgcaatctgg agatgattgt tttgtgttca ctttctgatt tgttgggttt ttttaattac
     7861 tttcaaaact tgttttcagg gttcctagtt tgtgagaagt tgaccttcgg aattattttt
     7921 acactattta tgacttattt tcataatgta aaaagtgtgt aattattaca ttaacccaaa
     7981 caatgataat tgtattgtta taaagtttta atgatattcc tga
//
