LOCUS       XM_039103870            6928 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type XXIV alpha 1 chain
            (Col24a1), transcript variant X1, mRNA.
ACCESSION   XM_039103870
VERSION     XM_039103870.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6928
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6928
                     /gene="Col24a1"
                     /note="collagen type XXIV alpha 1 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 10 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499723"
                     /db_xref="RGD:1565539"
     CDS             407..5602
                     /gene="Col24a1"
                     /codon_start=1
                     /product="collagen alpha-1(XXIV) chain isoform X1"
                     /protein_id="XP_038959798.1"
                     /db_xref="GeneID:499723"
                     /db_xref="RGD:1565539"
                     /translation="MHLGAYRTRHGKVSPTTETKLLLRFTVLCVAWITVRAQGQGIDI
                     LQQLGLGGRDVRYASSVTAVPSLSTPLPQGVHLTEFGVVLTDNAYIESPLVNILPVSL
                     RQPLTVLIGLQSLQVNNAFLFSIRNNNRLQFGVQLLPKKLIVHVGGKRTVTFDYSIHD
                     ERWHSLAITVDHRVVSMFVECGKRYFSGETTSEVQTFDPHSVFTLGSMNNSSAHFEGT
                     VCQLDIVPSAVASADYCSHLKQQCPRTDASQAERSLSHTEVVPTRYPEHTPLPRGLAG
                     TELTQKRFTEQAPFPKGFDEAELPRETFTDDSKSISNNTGNGSATVHESHEHQTPRVR
                     LTSFHSENISAVTLPSYRIQAKEITTKGETNLTLSVPHRLPSEAGMNEEERISPLFPE
                     FNITQHEEAAGLPSPKKASSSIAQTNQDTVTNLKKAITANLHTNELMEMERILNSTLY
                     KVIHGPSVDNHLELRKEGEFYPDATNPMENSYEPQPYEYYYYEDYNAMLDLEYLRGPK
                     GDTGPPGPPGPMGIPGPSGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGLSPGQAASG
                     EKGDPGLLGLVGPPGLQGEKGLKGHTGLPGLRGEQGIPGLAGNVGSPGYPGRQGLAGP
                     EGNPGSKGVRGFIGSPGEAGQLGPEGERGTPGVRGKKGPKGRQGFPGDFGDRGPAGLD
                     GSPGLVGGIGPPGFPGIRGNVGPAGPVGPPGVPGPMGLSGSRGPPGIKGDKGEQGVAG
                     EPGEPGYPGDKGAIGSPGPPGIRGKSGPSGQPGDPGPQGPTGPPGPEGFPGDIGIPGQ
                     NGPEGPKGHLGSRGPPGPPGLKGTQGEEGPIGPFGELGSRGKPGRKGYMGEPGPEGLK
                     GETGDQGDIGKIGETGPVGLPGEVGITGSIGEKGERGSPGPLGPQGEKGVMGYPGPPG
                     APGPMGPIGLPGLVGARGAPGSPGPKGQRGPRGPDGLAGDQGGHGAKGEKGNQGKRGL
                     PGRAGKTGSPGERGVQGKPGLQGLPGSSGDMGPAGEPGPRGLPGDAGLPGEMGVEGPP
                     GTEGDSGLQGEPGAKGDVGPTGSEGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSG
                     LPGEDGEKGEMGLPGTAGPVGRPGQMGPPGSEGIVGTPGERGRTGKKGDKGQTGPVGE
                     AGSRGSPGRVGDSGPKGARGTRGAVGPLGLMGPEGEPGIPGYRGLEGQPGPSGLPGPK
                     GEKGYPGEDSTVLGPPGPRGEPGPMGERGERGEHGEEGYKGHMGVPGLRGAAGQQGPP
                     GEPGDQGEQGLKGERGSEGPQGKKGVPGPSGKPGIPGLPGLPGPKGLQGYHGVDGLSG
                     YPGKPGLLGKQGLPGTTGSPGRTGLAGSPGPQGGKGSSGPPGSPGVPGPKGEQGLPGQ
                     PGIPGQRGQRGTQGDQGRRGEPGLKGQPGEHGNQGLTGFQGFPGPRGPEGDAGIIGIV
                     GPKGPVGQRGNTGPLGREGIIGPTGGTGPRGEKGFRGETGPQGPRGQPGPPGPPGAPG
                     PRRQMDINAAIGALIESNSAQQMESYQNTEVTFLSQGTEISKTLAYLSSLLSSIKNPL
                     GTRENPARICKDLLSCQYEVSDGKYWIDPNLGCSSDAFEVFCNFSAGGQTCVSPVSVT
                     KLEFGVGKVQMNFLHLLSSEATHIITLHCLNTPRRTGTPADGPELPISFKGWNGQIFE
                     ENTLLEPQVLSDDCKIQDGSWHKAKFLFHTQNPNQLPVTEVQNLPHLRTEQKHYIESS
                     SVCFL"
ORIGIN      
        1 accccgcctt tctcctccca ggcccaaagc agagagcgcc actggagtca cggagtctcc
       61 tttgaaccgc aagtgaactc cagagctgct ctctaaacct agctccggct gttgccgctg
      121 ccccccgctg cttcagggtg aagtctcgct catctctggt ccccccaggg gagcgcgacc
      181 ccggctgcag ccaggcagag catcctagct atctttcccc ctgggtgctg cttcctaccc
      241 tcatactgct tcatcccttg ccccacccta cactccgttt tgcgggttgg agcatggttc
      301 tcatgtgact ttcccccctt ttcatggaca gtacctgcac ctttagcagt tcggagctgg
      361 cttctgtttt ccgttagcgc tttgctgcag ggacaaatgc atacaaatgc atttaggagc
      421 ctacaggaca aggcatggaa aggtctcccc caccacagaa acgaaactgc ttcttcgctt
      481 tactgtacta tgtgtggcgt ggattactgt tcgtgcacag ggacaaggca tagacattct
      541 tcagcaacta ggccttggcg gcagagatgt aagatacgca tcatcggtga cagccgtgcc
      601 gtcattgtcc acaccattac ctcagggggt ccacttaacg gaatttggtg tggtcttaac
      661 agacaacgcc tacatagagt cacctctcgt gaacatttta ccagttagcc taaggcagcc
      721 gctgacagtg ttgattgggt tgcagtcact ccaagtgaac aatgcatttc tcttcagcat
      781 tcggaataac aacaggctgc agtttggcgt gcagctctta cctaagaaac tcatagtgca
      841 cgtcggagga aagcgaacag taactttcga ctacagcatc cacgatgagc gctggcactc
      901 attggccatc actgttgacc accgtgttgt ctccatgttc gttgagtgtg ggaagagata
      961 ttttagtgga gagactactt cagaagttca gacctttgac cctcacagtg tgtttacctt
     1021 gggaagtatg aataacagct ctgcccactt cgaaggaaca gtgtgccagt tggatattgt
     1081 gccttctgca gtggcatctg ctgactattg cagtcacctg aaacaacagt gtccccgaac
     1141 ggatgcatcc caggctgaga gaagcctttc tcatacagaa gtggtgccca ccagataccc
     1201 tgagcacact cccttgccca gaggacttgc aggaacagaa ttgacacaga agagattcac
     1261 agagcaggct cccttcccca aaggatttga tgaggcagaa ttgccacggg agacattcac
     1321 ggatgatagc aagagcattt caaacaacac aggtaatggt tcggccacag tccatgaaag
     1381 ccacgagcac cagacaccaa gggttcggtt aacctctttc cattcagaaa acatctcagc
     1441 tgtgactctc ccaagctaca gaattcaagc taaagaaatc accaccaagg gcgagacaaa
     1501 cttaaccctg tcagtgccgc atcgtctccc tagcgaggca ggaatgaacg aagaggagag
     1561 aatcagtcct ctcttccctg aattcaacat cacccaacat gaggaggcag ctggcctgcc
     1621 ctcacctaag aaggcatcat ccagcattgc acagacaaat caagacaccg tgactaacct
     1681 caagaaggct atcacggcaa acctacacac caatgaactc atggaaatgg aacggatctt
     1741 aaacagcacc ttgtataaag tgatacacgg gccctcggtg gataaccacc ttgaactaag
     1801 gaaggaaggt gaattttacc ctgatgctac taatcccatg gaaaatagct atgagcccca
     1861 gccttatgaa tattactatt atgaggatta taacgccatg cttgacctgg agtatctgag
     1921 agggccaaaa ggagacactg gacctcccgg tccccctggt ccgatgggta tcccaggtcc
     1981 ctcaggcaag agaggcccga ggggtattcc gggaccacat ggaaatcccg ggctgcctgg
     2041 actgccaggt ccaaagggcc ccaaaggaga tcctggactg tccccaggcc aagctgcttc
     2101 tggagaaaag ggtgacccag gtcttttggg gctagtgggg ccccctggtt tacaaggtga
     2161 aaagggtctc aaaggacaca cagggctccc cggactccgc ggtgaacaag gaattccggg
     2221 actcgctggt aatgttggct cgcctggcta ccctggcagg cagggtttag ctggaccaga
     2281 gggtaaccca ggctccaaag gtgtccgagg tttcattggc tctcctggag aggcgggaca
     2341 gctgggacct gaaggagaaa ggggcactcc tggggtccgt gggaagaagg gtccaaaggg
     2401 gagacagggt ttcccaggtg actttggaga cagaggccct gctggtctgg atggcagtcc
     2461 tggtcttgta ggtggcatcg gacctcccgg ctttccaggc attagaggaa atgtcggtcc
     2521 tgcaggaccc gttggacctc cgggagttcc tggcccaatg ggcctttcag gaagtagagg
     2581 accacctgga atcaaaggtg ataagggtga gcaaggtgtg gcaggggagc caggagaacc
     2641 cgggtatcct ggagacaagg gcgccattgg gtcaccagga ccaccaggga ttagaggaaa
     2701 gtcgggacct tcaggacaac caggtgaccc aggaccacag ggaccaactg ggcctccagg
     2761 accagagggt tttccaggag acattgggat tcctggacaa aatggacctg aaggaccaaa
     2821 gggacatctt ggaagcagag ggccccctgg gcctccaggt ctcaaaggaa ctcagggaga
     2881 agaaggacca attggaccct ttggagaact gggatctagg ggaaaaccag gtcgaaaagg
     2941 gtatatgggt gaaccagggc cagaaggctt aaagggagaa acgggagacc aaggagatat
     3001 tgggaaaatt ggcgaaacag gacctgttgg tttacctgga gaagtaggga taaccggaag
     3061 cattggcgaa aagggagaac gtggaagtcc aggcccactt ggtccccagg gggaaaaagg
     3121 tgtcatgggt tacccaggtc ctcctggggc tccaggaccc atgggcccaa ttggattacc
     3181 tggtcttgtt ggagcaagag gcgcgcccgg gagcccaggt cctaaaggac aaagaggacc
     3241 cagaggacca gatggcctcg caggggatca aggtggacat ggtgccaagg gtgaaaaagg
     3301 aaaccaaggg aaaagagggc ttcctggtcg tgccggtaag actggaagcc ctggggagag
     3361 gggagttcaa ggaaaaccag gcttacaagg actccccggc agctcaggag acatggggcc
     3421 tgccggagaa ccagggccgc gaggactgcc tggtgatgct ggacttcctg gagagatggg
     3481 tgtggaggga cctccgggca ctgagggcga ctctggcctg caaggtgaac caggtgctaa
     3541 gggagatgtt ggacctaccg gcagcgaggg agccactggg gagccagggc cgcgaggaga
     3601 accaggagct cctggagaag aaggtctcca aggaaaagat ggattaaagg gagctccagg
     3661 aggaagcgga cttcctggag aggatggaga aaaaggagag atgggcttac caggaacagc
     3721 agggccggtg gggagaccag gtcagatggg ccctccagga tctgaaggaa ttgtgggaac
     3781 cccaggagaa agaggtcgaa cagggaaaaa gggtgataaa ggacaaacag gacccgtggg
     3841 agaagctgga agcagaggtt cccctggacg cgttggggac agtggcccta agggtgccag
     3901 aggaactcga ggtgctgtgg gtccattagg attgatggga cctgaaggtg aaccaggaat
     3961 cccaggatac agaggccttg aaggtcagcc aggaccctct ggattgccag gacctaaagg
     4021 agaaaagggc tacccaggag aagacagcac agtcctggga cctcctgggc ctcgaggtga
     4081 accagggcca atgggggagc gaggagagag aggggagcat ggggaagaag gctataaggg
     4141 ccatatgggt gtcccaggac tcagaggtgc cgcgggacaa caaggacccc caggtgaacc
     4201 aggtgaccag ggcgaacaag gactgaaagg agagagagga tctgaaggtc ctcaggggaa
     4261 aaagggagtt cctggtcctt ctgggaaacc aggcattccc ggtcttccag gccttccggg
     4321 gccaaaaggc ttgcaaggat atcatggagt cgacggccta tcaggatacc cgggaaagcc
     4381 tgggctactg ggaaaacaag gacttccggg caccacgggc agcccaggaa gaacaggact
     4441 ggctggatcc ccaggtcctc agggaggaaa gggttcatca ggccctccgg gaagccctgg
     4501 tgttccgggc ccaaagggtg aacaagggtt acctggtcag cctggaatcc caggccaaag
     4561 aggtcagcgg ggaacacaag gagaccaagg acgacgtgga gagcctggtc tgaaagggca
     4621 gcctggagaa catggcaatc aaggtttgac aggtttccaa ggattcccgg gccccagggg
     4681 tccagagggg gatgctggta tcattggcat tgtaggccct aaaggtcccg ttgggcagag
     4741 aggaaacact ggccctcttg gcagagaagg gataataggc ccaacaggtg gaactggacc
     4801 cagaggtgaa aagggcttta gaggtgaaac tggtccccaa ggaccaagag gtcaaccggg
     4861 accccctggt ccacctggag cgcccggtcc acgaagacaa atggatatca atgctgctat
     4921 tggagctctg atagaatcaa attctgccca gcagatggag agttaccaga acactgaagt
     4981 gaccttcctc agccaaggta cagagatttc caaaaccctg gcctacctta gcagtctcct
     5041 gagcagcatc aagaatcctc ttggcacacg agaaaacccg gcacggatct gcaaggattt
     5101 gctgagctgt cagtatgagg tttcggatgg aaaatactgg attgacccaa atcttggatg
     5161 ctcttcagat gcctttgagg ttttctgcaa cttcagtgct ggaggccaga catgtgtatc
     5221 tcctgtttct gtgacaaagt tggagtttgg agtcggcaaa gtacagatga actttcttca
     5281 cttgctgagc tcagaagcca cccacatcat cacccttcac tgtctaaaca ccccgaggcg
     5341 gaccggcacg ccggcggatg gtccagagtt gcctattagt ttcaaaggat ggaatggtca
     5401 gatttttgaa gaaaacactc tacttgaacc tcaagtcctc tcagatgact gcaagattca
     5461 ggatggcagc tggcacaagg caaaattcct cttccacacc cagaatccta atcagcttcc
     5521 tgtaaccgaa gtgcaaaatc ttcctcatct cagaaccgag caaaagcact acatcgaaag
     5581 cagttctgtg tgctttctct aaggcctccc gggtcagccc ggaggccatg ctgttggtca
     5641 ggtaattgca gagaggaaca ggtagacaga aaggtatgtc attgtgaaat gtgggggaga
     5701 agaaaaaaaa agacaggggt taaatcttaa gaaatctcag gaagaaacaa tttcctccta
     5761 aggagaaacg gcatttttaa aggactataa ctgataatgt atttaattct cttaattttt
     5821 ctttttattg atctgagttt tcgtaaagaa ttccctagaa ctgaagttgt atagactcgg
     5881 atttcttgag ggtttcctgt gctttcatcc agtcagacag ctggagctgc aggccaccat
     5941 ggagcagtac tggatagtgc tctaaacgtg ggatgtttct tctaaagctt gcaagccaca
     6001 gtcttcggca ccttctcgtc ccaaacacta agctgcgttc aggtccccca cgggcggata
     6061 aaatcttagc ggtgcacact acctctttcg tgtttccttt ttggtgttgc ttggtgctgt
     6121 ttcccaaaac agggtgctgt ggctgtcata agactatttt atttctttct tcatcctcga
     6181 tattaagagt gtatgtactg gttacatcaa aatatgtctt aattgttaat acttatttcc
     6241 acttgtttgg tgtcatgctt aataacaagt agagttattt atgcaaggtc ctcgtttgat
     6301 tctaaaactc tctctgtgca cacggaatca aggccagcat gctgtaactc gtgtgtatac
     6361 acaagagagc tggggcttct cttctgttgt ttttcttctt taaattgctg taaaaagtac
     6421 tttaggccac ctatatccag tggtgggtat ggattaaaaa ctggtgtttg tgatatactg
     6481 tttttaaact ccaagatcat ctggaatgat attttgtgta catatatata tataaatatt
     6541 gtgtaaagtt ttaattcagc caatcctttg aaaattgctg ctgttctaaa ttatgaaatg
     6601 ttgtatttat gctttgtaga aaattcttgc tttgtagtac ccaatggttt tttttctttc
     6661 actgctctga aatataatgt taagtgttca aaagaatttt acagtcttta aagcaacgtc
     6721 gtacatgagg ggatcttttt ccactaaagc taagctaagc ccattcagtc tttccctgac
     6781 atggaacaat gttagctcaa tagtaaagaa aaagagttta tgcctcgtgc tgtgtggaga
     6841 gcctgttgct cacccattac aagcatcctg ttaacctcag caaaccaagt ttacccatct
     6901 ataataaaga ggtgctttaa atcatctt
//
