LOCUS       NM_181636               2733 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus collagen type XXIII alpha 1 chain (Col23a1),
            mRNA.
ACCESSION   NM_181636
VERSION     NM_181636.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2733)
  AUTHORS   Banyard,J., Bao,L. and Zetter,B.R.
  TITLE     Type XXIII collagen, a new transmembrane collagen identified in
            metastatic tumor cells
  JOURNAL   J Biol Chem 278 (23), 20989-20994 (2003)
   PUBMED   12644459
  REMARK    GeneRIF: identified in rat prostate carcinoma cells; shows
            structural homology with the transmembrane collagens XIII and XXV
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY158896.1.
            
            On Jun 17, 2003 this sequence version replaced NM_181636.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY158896.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760396
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Copenhagen"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..2733
                     /gene="Col23a1"
                     /note="collagen type XXIII alpha 1 chain"
                     /db_xref="GeneID:353303"
                     /db_xref="RGD:727898"
     exon            1..389
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..1727
                     /gene="Col23a1"
                     /note="collagen XXIII; procollagen, type XXIII, alpha 1;
                     collagen, type XXIII, alpha 1; collagen alpha-1(XXIII)
                     chain-like; alpha 1 type XXIII collagen"
                     /codon_start=1
                     /product="collagen alpha-1(XXIII) chain"
                     /protein_id="NP_853667.1"
                     /db_xref="GeneID:353303"
                     /db_xref="RGD:727898"
                     /translation="MGAGERAAGGGGTQDPGAGCGARALGALCLLLSVGSATACLLLG
                     AQAAALHGRVAALEQERELLRRAGPSGALAAWAETHLERLLREKLDGVAKLRTVREAP
                     SECICPPGPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDF
                     GPRGAQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPEGPRGESGQDGEMGPMG
                     PPGPKGEPGTPGKKGDDGIPSQPGLPGPPGPKGEPGDVGPQGETGVDGAPGLKGEPGH
                     PGTDGAIGPRGPPGLKGEQGDTVVIDYDGRILDALKGPPGPQGAPGPPGIPGAKGELG
                     LPGAPGIDGEKGPKGPKGDPGEPGPAGPKGETGEMGLSGLPGADGPKGEKGESASDHL
                     QESLAQIIVEPGPPGPPGPPGPMGLQGIQGPKGLDGAKGEKGASGERGPHGLPGPVGP
                     PGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGRKGVKGQKGEP
                     GPPGLDQPCPVGPDGLPVPGCWHK"
     exon            390..456
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            457..501
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            502..509
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            510..536
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            537..563
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            564..590
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            591..617
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            618..734
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            735..770
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            771..797
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            798..824
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            825..878
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            879..941
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            942..986
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1064
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1065..1118
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1163
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1164..1253
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1316
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1373
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1400
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1401..1463
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1464..1517
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..1544
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1545..1598
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1599..1685
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1686..1724
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1725..2731
                     /gene="Col23a1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccgctgcg tctgagcggg cggctagggg ggcgtgcgcg atccacggcc gcccggacgc
       61 cgagccccgc agccgccgac ctggagccac cccgggccgc agcgcctacg cagagccggc
      121 cggtcgccat gggcgcgggc gagcgcgcgg cgggcggggg aggcacgcag gaccccggcg
      181 cgggctgcgg ggcgcgggcg ctgggcgcgc tgtgcctgct gctgtcggtg ggctctgcga
      241 ccgcctgtct cctgctgggc gcccaagcgg ccgccttgca tggccgagtg gcggcgctgg
      301 agcaggagcg cgaactgttg cggcgtgcgg ggccgtccgg agccctggcg gcctgggccg
      361 aaacgcacct ggagcgcctg ctacgggaga agttggatgg agtcgccaag ctcaggacag
      421 ttcgagaagc cccctctgag tgcatctgtc cccctggtcc ccctggacgg cgtggcaagc
      481 cgggacgaag aggcgaccca ggccctccgg ggcaatcagg acgagatggc tacccgggac
      541 ctctaggtct ggacggcaag ccaggacttc caggccccaa aggggaaaag ggtgcaccag
      601 gagactttgg cccacgggga gcccaagggc aagatggagc tgcaggacca cctgggcctc
      661 ctgggccacc tggggcccgg ggccctcctg gtgacactgg gaaagatggt ccccgaggag
      721 ctcaaggccc agagggtccc agaggagagt ctggacaaga tggcgaaatg ggccccatgg
      781 gacctccagg acccaaggga gaacctggca ctcctggaaa gaagggggat gatgggatac
      841 ccagccagcc aggactccct ggacccccag ggcccaaggg tgagccagga gatgtggggc
      901 cccaaggaga gactggagta gacggtgccc ctggactgaa gggggagccc ggtcacccag
      961 gcacggatgg agccataggg ccccggggtc ccccgggcct caagggagaa caaggtgaca
     1021 cggtggtaat cgactatgat ggcaggatct tagatgccct gaagggtcct cccggaccac
     1081 agggagctcc tgggccacca gggatccctg gagccaaggg tgaacttgga ttgcctggtg
     1141 ctccaggaat cgatggagag aagggtccca aaggaccaaa aggagaccca ggagagcctg
     1201 gaccagctgg acccaaaggg gaaacaggag agatgggcct gtcaggtctt ccgggtgccg
     1261 atggtcccaa gggagaaaag ggagagtcag catctgacca tctacaggag agcctggccc
     1321 agatcatagt ggagccaggg ccccccggtc ctcctgggcc ccccggcccc atgggccttc
     1381 aggggatcca gggtcccaag ggcctggatg gagccaaggg agaaaagggt gcatcgggtg
     1441 agagaggccc tcacggtctg cctggaccag ttggcccacc aggccttatt gggttgcccg
     1501 gaaccaaagg agagaagggc cgacccggag agccaggact cgacggtttc cctggaccca
     1561 ggggagagaa aggcgaccga agtgaacgag gagagaaggg ggagcgagga gttcctggtc
     1621 ggaaaggagt gaaaggccag aagggagagc caggcccacc aggccttgac cagccatgcc
     1681 ctgtgggccc cgacgggttg cctgtgcctg gttgctggca taagtgatcc tcgggcatag
     1741 cccccaacct gtacagatcc gtttggatgt ttttaactcg tgtaaaaaca aaacagtaat
     1801 atattgaact tctttatggg atgcgccaac tgtgtggcct tgtaagattt gcaagtgtgc
     1861 caaccagccc ctggaccatc tgcacaggaa gccggcagga acgcagacag gctggctgct
     1921 ctggggaaac ttgtgttcga aggcccccgg cagggcctgg ctttcccagg gagaggacga
     1981 gggtgaaaac gcctggctca ggtgaggatg gacagactcc aggtcgggct tacaatcacc
     2041 tgattagcag agacttacaa caactgtcct ctgaaacccc actgccccaa cttctcactg
     2101 tccaacgaca cccccttgga cacctgctgt accctcttgc ttctggactg tgccacaggc
     2161 agctgcactg ggaccctagg tttaacaggg caggcgaaga ttcctagagt ccagcacttg
     2221 gggagaaggc aatggaagaa cccaagaggg ccttgctcca cccagttcag taggcttcct
     2281 gacacaggag cttgtaccct cttcagacct tgggaaatgg caagactctg tggatacctc
     2341 actggcaggc agcccagtga accctgactg tagggtgaag aggccatacc cactagttgg
     2401 tacttcctgt ctcctcaccc agagcaggaa caggaagtgg ctttgtcagc ccaaggagac
     2461 aggcctcctg ttcagaactt gtatctcact ggccccaagt ctctgaccta gacctctggt
     2521 tagcctgaca gaaacaggcc ccctagtaaa tgaccctgaa ggctggtccc ccggcaagcc
     2581 tgagcaaagc acctgtgact gaaacccctg ccctctctgg agaggcttga acacctataa
     2641 cgaagtttcc tagctcctgc tccatcacgg cctcacatcc ctctgcatat aaaggcacca
     2701 tgagcaataa accacaaatg tgcgtccagt aaa
//
