LOCUS       XM_039080218            6181 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type XXII alpha 1 chain
            (Col22a1), transcript variant X1, mRNA.
ACCESSION   XM_039080218
VERSION     XM_039080218.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080218.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6181
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6181
                     /gene="Col22a1"
                     /note="collagen type XXII alpha 1 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:315071"
                     /db_xref="RGD:1309081"
     CDS             484..5325
                     /gene="Col22a1"
                     /codon_start=1
                     /product="collagen alpha-1(XXII) chain isoform X1"
                     /protein_id="XP_038936146.1"
                     /db_xref="GeneID:315071"
                     /db_xref="RGD:1309081"
                     /translation="MPVSKRRRAMAVPRGNPLACLLWILLLCGGYGSCQAQRAGCKSV
                     QYDLVFLLDTSSSVGKEDFEKVRQWVANLVDTFEVGPGHTRVGVVRYSDRPTTAFELG
                     HFSSREEVKAAARRITYHGGNTNTGDALRYITSRSFSAQAGGRPGNRAFKQVAILLTD
                     GRSQDLVLDAAAAAHAAGIRIFAVGVGAALKEELDEIASEPKSAHVFHVSDFNAIDKI
                     RGKLRRRLCENVLCPSVRVEGDRFKHTNGGTKEITGFDLMDLFSVKEILGKRENGAQS
                     SYVRMGSFPVVQRTEDVFPQGLPDEYAFVTTFRFRKTSRKEDWYIWQVIDQYGIPQVS
                     IRLDGENKAVEYNAVGAMEDAVRVVFRGPQVDNLFDRDWHKMALSIQAQNVSLYIDCM
                     LVQTLPIEERENIDIQGKTVIGKRLYDSVPIDFDLQRIVIYCDSRHAELETCCDIPLG
                     PCQVTVVTEPPPAPPQLPTPGSEQIGFLKTINCSCPAGEKGERGFAGPVGLPGQKGDA
                     GPIGLMGAPGPKGEKGDTGRGPFIQGGKGEKGSLGPPGPPGRDGSKGMRGEPGELGEP
                     GLPGEVGMRGPQGPPGLPGPAGQVGAPGLRGERGEMGPPGEKGERGLDGFPGKPGEIG
                     EQGRPGPPGVAGLQGEKGDVGPAGPPGVPGSVVQREGLKGEQGAPGPRGHQGLPGPPG
                     APGLIGPEGRDGPPGPQGLRGKKGEVGPPGTPGSVGPQGPPGPPGVQGPPGPGGPPGL
                     PGELGFPGKPGPAGHVGPPGKDGVNGPPGLPGSKGEPGDPGESGVPGMPGPRGEVGEQ
                     GLAGHPGEKGEVGLPGAPGFPGVRGEKGNQGEKGELGLPGLKGAQGEKGEVGPAGPPG
                     LPGSPSIFTPHPRMPGEQGPKGEKGDPGEPGALGPQGHPGELGPRGPTGPPGAKGQDG
                     AQGPPGTAGNPGAPGPAGLPGLSGPPGSVGSPGVRGTPGKDGERGEKGTAGEAGSPGP
                     AGPRGDPGAPGLPGPPGKGKDGEPGLRGPPGLPGPLGTKGDRGTPGIPGSPGSRGDPG
                     IGVAGPPGPSGQPGDKGPPGSRGLPGFPGPQGPAGQDGTPGNPGERGPPGKPGPSSLL
                     SPEDINLLVKDVCNDCPPGPPGLPGLPGFKGDKGLPGKPGREGTEGKKGDTGPQGLPG
                     PPGVAGPQGSKGEHGAEGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGNAGAAGLPGP
                     QGPPGKEGPPGPQGPSGIPGIPGEEGKQGRDGKPGPPGEPGKTGEPGLPGAEGVRGPP
                     GFKGHTGDPGPPGLRGEPGPTGPPGREGSPGKDGDTGPAGPQGPRGTRGPPGSSGSPG
                     SPGDPGRPGAPGQKGNKGESGSPGLPGFLGPRGPPGEAGEIGAPGKEGAPGKPGEPGS
                     KGEPGDPGIKGDKGPPGGKGQPGDPGTPGHKGHTGLMGPQGQPGESGPPGPPGPPGQP
                     GFPGLRGESPSIDTLRRLIQEELGKQLEAKLAYLLAQMPPAHIKSSQGRPGPPGPPGK
                     DGLPGRTGPMGEPGRPGQGGLEGPSGPMGPKGERGAKGDPGTPGVGLRGEMGPPGIPG
                     QPGEPGYAKDGLPGSPGPQGETGPAGHPGPPGPPGPPGQCDPSQCAYFASLAARPSNV
                     KGP"
ORIGIN      
        1 ggcagggagc ttttagccgg ggaaacccag agaccagcca gtgagcccct ggggaggcct
       61 ggggcagctt tgttcctgga cagaacaggc ttgagagggc tgtggcttct cccctaggac
      121 ctgcttgtcc cttttctgct ttgcctctct cacacacttg ccattcttct ctgataagct
      181 tcagcttttc cctctaactg cagccttgaa agctagctct gttttgggac ccatggtcta
      241 ggagaaagct cccacatttt gcctggagac tgaggagtgt tagaacttct ttttagtgac
      301 aggcaaggta tttgtatgct ataggggaat cccagaaggg aactgcctga gactggcatc
      361 ttccctgaac cccgcttcca gtggttctga tcccaggaca caagcccggg ctggacccct
      421 tgaacatctc cctggcagga aatgttccac tagactccag aggtatctct tcttgatcaa
      481 gatatgcctg tctccaagag gaggagagcc atggctgtcc cccgagggaa tcctttggcc
      541 tgccttctgt ggattctgct gctgtgtgga gggtatggta gttgccaggc ccaacgtgca
      601 ggttgcaaaa gtgtgcagta tgatctggtc tttcttctgg acacgtcttc cagtgtaggc
      661 aaggaggact ttgagaaggt ccgccaatgg gtagccaacc tggtagacac ctttgaggtg
      721 ggccctggcc acacccgtgt gggggttgtg cgctacagtg accggcccac tacagccttt
      781 gaactgggcc acttcagctc ccgtgaggag gtaaaggctg ctgcgaggcg catcacctac
      841 catggcggta acacgaacac aggcgatgcg ctgcgttata tcaccagccg cagcttttct
      901 gcccaggcag gtggcaggcc tgggaatcgt gccttcaagc aggtggccat cctgttgact
      961 gatggccgta gccaggacct ggtgctggat gctgcagcag ctgcccatgc agctggcatc
     1021 cgcatctttg ctgttggtgt gggtgcagcg ttaaaggagg agctggatga gatcgcttca
     1081 gaacccaagt ctgcacacgt cttccatgtt tccgacttca acgccattga caagatccgt
     1141 ggcaagctga ggcgtcggct ttgtgaaaat gtgctctgcc ctagtgtccg ggtagaagga
     1201 gatcggttta aacacaccaa tggaggaacc aaggagatca caggttttga cttgatggat
     1261 ttattcagtg tgaaggaaat cttggggaag agagaaaacg gagcccagag ttcctatgta
     1321 cggatgggtt ccttccctgt ggtgcagaga actgaagatg tgttccccca aggcctgcct
     1381 gatgagtatg cctttgtcac aactttccgg ttccggaaaa catcacggaa agaagattgg
     1441 tacatctggc aagtcattga ccagtatggc atcccacagg tctctatccg gctggatggt
     1501 gagaacaagg cagttgagta caacgctgtg ggtgccatgg aggatgcagt ccgggtggtc
     1561 ttccgaggcc cccaagttga taaccttttt gaccgtgact ggcacaagat ggctctaagc
     1621 atccaggccc agaatgtgtc cctctacatt gactgtatgc tggttcagac gctgcccatt
     1681 gaggagaggg agaacatcga catccagggc aagactgtga ttggcaaacg tctctatgac
     1741 agcgtgccca ttgattttga cctgcagcgg attgtgattt actgtgactc gcgacatgca
     1801 gaactggaga cttgctgtga catccccttg ggtccgtgtc aggtgactgt cgtgacagag
     1861 ccgccacctg cgcctccaca gctgcccaca cctggtagcg aacagattgg gttcttgaag
     1921 accatcaact gctcctgccc agctggagaa aagggtgaga ggggctttgc tggccctgtg
     1981 ggactccctg gtcagaaggg agatgcagga cccattggac taatgggagc tcctggaccc
     2041 aagggagaga aaggagacac tgggagagga cccttcatcc agggaggaaa gggtgagaag
     2101 ggatctctgg gcccacctgg gccccctgga agagacggca gtaaaggcat gagaggggaa
     2161 ccaggagagt taggagagcc ggggctgcct ggagaggtgg gcatgcgggg gccccaggga
     2221 ccacctggac tacctggacc tgctgggcaa gttggagctc caggtcttcg aggagaacga
     2281 ggtgaaatgg gacctccagg agaaaagggg gagcgaggac tggatggatt ccctgggaag
     2341 cctggagaga ttggagagca gggaagacct ggacctcctg gtgtggcagg actgcaggga
     2401 gagaagggag atgtggggcc tgccggaccc cctggtgtgc caggctctgt ggtgcagaga
     2461 gagggcctga agggagagca gggagccccc ggaccaagag gtcaccaagg cctacctggg
     2521 cctccaggag cacctggttt gattggtcca gaaggcagag atggaccccc agggcctcaa
     2581 ggtctccgag ggaagaaagg tgaagtgggt ccaccaggaa cccctggatc agtgggacca
     2641 cagggcccgc ctggaccacc cggtgttcaa gggccccctg gaccaggagg tcccccgggt
     2701 ttacctggtg agctcggctt cccgggaaaa cctgggcctg ctgggcatgt gggaccacct
     2761 ggaaaggatg gggtgaatgg gcctccaggc ttgcctggtt ccaagggaga accaggggac
     2821 cctggcgaaa gtggtgtgcc tggaatgcct ggacctcggg gtgaagttgg ggagcagggc
     2881 cttgcaggtc atcctggtga gaagggagaa gttggccttc ctggtgctcc aggcttccca
     2941 ggagtacgtg gagagaaagg aaaccaggga gaaaaaggtg aactgggact tccgggtctg
     3001 aaaggtgccc aaggagaaaa gggtgaggtt ggtccagcag gccctcctgg cttacctgga
     3061 agtccatcaa tattcacacc acacccaaga atgccaggag aacaagggcc caaaggagaa
     3121 aagggtgatc ctggcgagcc tggagccctg ggaccacagg gccatcctgg agaattgggt
     3181 cctcggggac ccactggacc tccgggtgcc aaggggcagg atggtgcaca agggcctcct
     3241 ggaacagctg gaaaccctgg tgctccagga ccagcaggac tgcctggtct cagcggcccc
     3301 ccaggaagtg tgggttcccc tggtgtcaga ggcacccctg ggaaagacgg ggagcgtgga
     3361 gagaagggaa cagcagggga agcaggcagc ccggggccag ctggtccacg gggagatcct
     3421 ggcgctcctg gcctccctgg gccaccagga aaggggaagg atggggagcc gggactacga
     3481 ggaccacctg gattacctgg tcccttagga accaagggtg accgaggaac acctgggatc
     3541 cctggctctc ctggcagccg tggagaccca ggcattgggg ttgctggtcc acccggcccc
     3601 tcaggacaac caggagataa aggacccccg ggatctcgag gcttacctgg attccccggc
     3661 ccacaaggac cagctggcca ggatggtaca ccaggaaatc caggagaaag agggcctcct
     3721 ggaaaaccag gcccatcttc actgctgtct ccagaggaca taaatctctt agtaaaggat
     3781 gtgtgcaatg attgccctcc tggtccccca ggcctcccag gtctgccagg tttcaaaggg
     3841 gacaagggtc ttccaggaaa accagggaga gaagggacag aaggcaaaaa gggagatact
     3901 ggaccccaag gcctccctgg gcctccagga gtagctggac cacagggaag caaaggagag
     3961 catggtgcag agggtgaggt gggacagaaa ggcgatcagg gtcaccctgg agttccaggc
     4021 ttcatgggcc cacctgggaa tcctgggcca ccaggagcag acggaaatgc aggtgcggca
     4081 ggactaccag gacctcaagg gcccccgggc aaagaaggcc ctcctggtcc ccaaggccca
     4141 tctggcatcc caggaatccc aggtgaagaa ggcaaacagg gcagagacgg aaagccaggt
     4201 ccccctggag aaccgggcaa aacaggagaa ccaggccttc caggagcaga gggagtcaga
     4261 ggtccaccgg gcttcaaggg acatacaggt gatcctggcc cacctggtct gaggggagaa
     4321 cccggcccaa caggcccccc tggaagggaa ggatcaccag gaaaagatgg tgacactgga
     4381 cctgctggac cacagggtcc cagaggaaca aggggaccac cgggcagcag tggatcacct
     4441 ggatctccag gagaccctgg ccgtccagga gccccaggcc aaaagggaaa caaaggagaa
     4501 agtggcagcc caggacttcc agggtttctg ggtccccgtg ggcctccggg agaagcagga
     4561 gagataggag ctccaggaaa ggagggtgct cctgggaagc ctggagagcc aggatccaaa
     4621 ggagagccgg gagaccctgg gatcaaaggt gacaaaggac cgccaggtgg gaagggccag
     4681 cctggagacc ctggaacccc aggccacaag ggtcacactg gcctaatggg tccccaagga
     4741 caaccagggg agagtggccc tcctgggccc ccagggccac ctggccagcc aggatttcca
     4801 ggacttcggg gtgagtctcc atccattgac accttaaggc gcctcattca ggaagagctt
     4861 gggaagcagc tagaagccaa acttgcctac ctcctggccc agatgcctcc agcacacatc
     4921 aagtcctctc aaggcagacc tgggccccca ggaccccctg gaaaagatgg gctgccaggc
     4981 cggacaggcc ccatgggtga accaggccgc cctggccaag gtggtctaga agggccctct
     5041 ggaccaatgg gccccaaagg tgagagagga gccaaaggtg atcctggcac acctggagtt
     5101 ggccttcgag gagagatggg tccccctgga ataccaggcc aacctggaga acctggatat
     5161 gctaaagatg gacttccagg aagccctggc cctcaaggag agacaggacc agctggacat
     5221 cctggccctc ctggtccccc tggccctcct ggccagtgtg acccctccca gtgtgcgtac
     5281 tttgccagcc ttgctgcccg gccaagtaat gtgaagggcc cctagaagat tctagaacat
     5341 caaaacactg ctatggattt ctgaaacttg aactcggagc ccactgggaa gccagaagcc
     5401 ttgaaacatt tcagatcctc cttttctctc tccttcctac ctcctgcctt ttcttgctgt
     5461 ttcccttctt tctactcttc cctccttgcc tgccttaatt gtctcttccc ttcctcagac
     5521 acctcacagt tattaaaacc aacagatact gtcggacagt caggttatta ttaatattat
     5581 tgttattatt tgctgttatt tcaaatgcta atagttcagg gggagcttcc tggtgaacag
     5641 gaagtagttt cctggctccg ctcccctgtc aacactggct gaagtgtgac agccaattct
     5701 gaggaatcct cggtgctatg caaccctgac catgtatgca cttgctaatt ttacctcttt
     5761 cctggaaagg aagctttaag ggatggagac tatcatgttg tctcctcatc tgtgcctaaa
     5821 gatggcccag ggaaaaataa gtttgaaacc cccacctccc aggagagact ggaagcaaga
     5881 agaatttgca gcctggaaga attcattgac ctctggagac aaggtgcaca tctggagttc
     5941 agaactgcct tagggcattg gggagggtgg gcatcctcag tgcttcaagc tactagaact
     6001 ccaaaagaag tcacatagaa ttggcagtag cttgtgtctg ggcactcaat aaacaagctg
     6061 gtgctgaaga agagttcccc ggtgtgactt tgctttgaac agtgacctgg agcccttcaa
     6121 gtgcctcatg ctggttgcaa ttgtgtgagt tgcaaaataa aagttttcaa tgttcactgg
     6181 c
//
