LOCUS       XM_039106762            7791 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type XX alpha 1 chain
            (Col20a1), transcript variant X1, mRNA.
ACCESSION   XM_039106762
VERSION     XM_039106762.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106762.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7791
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7791
                     /gene="Col20a1"
                     /note="collagen type XX alpha 1 chain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:311716"
                     /db_xref="RGD:1563901"
     CDS             3463..7566
                     /gene="Col20a1"
                     /codon_start=1
                     /product="collagen alpha-1(XX) chain isoform X1"
                     /protein_id="XP_038962690.1"
                     /db_xref="GeneID:311716"
                     /db_xref="RGD:1563901"
                     /translation="MPLRENLLLEVVSWSLVSLLHTPTSNPVVTVSSRLRLAVLPEDR
                     LQMKWREAEGSGLGYLVQVTPMAGDLEQELVLTTKTPKATVGGLSPSKSYTLQIFELT
                     DSGPVLLARREFVIEDLKSQSLGRGSRRLAGATLEPPSFPLRDPDSEKTSEPSIAFTS
                     SRDLPILGVASKDQRKLKQGLGVQDSAQPTPDLERQSHTAVSVGKRGKLDDPQFQCTP
                     PTPADIIFLVDGSWSIGHNNFQQVKDFLASIITHFAIGPDKVQVGLTQYSGDPQTEWD
                     LNSFHTKEQVLAAVHHLHYKGGNTFTGLALTHVLGQNLKPAAGVRPEAAKVLILVTDG
                     KSQDDVRTAARVLKDQDIDVFTVAGVKNVDEAELKLLASQPLDITVHNVLDFPQLTTL
                     APLLSRLICQKIQGRGPVKPAAGTRILDPLPTPTRLTLTHVTSSSIHLSWTPALYPPL
                     KYLIVWQPSRGGAPKEVVVEGPVSSMELGNLTSNTEYSVSVLPVYESGVGKSLQGRAT
                     TAPLPPPGPLTLAAVTPRTLHLTWQPSAGATQYLVQYLLAASTGEEQKREVHVGRPEV
                     VLDDLEPGQDYEVSVQSLRGPEASEARNIHARTPVPGPPRHLSFSDVRYNSTCVSWEA
                     QRPVRLVKVSYVSSDGSHSGQIQVPGNVTSATLGPLSSSTVYTIRVTCFYLRGGSSVL
                     TGHVTTQKAPSPSQLSVTELPGDTVKLSWLATALSGVLVYQIKWMPLGEGKAHEISVP
                     GTLGTAILPGLMKHVEYEITILAYYRDGTRSDPVSLRYTPSAANRSPPSSLALSSETP
                     NSLQVSWAPPSGHVLHYRLNYTLASGSGPEKSISVPGTRSHVVLRDLMSAAKYRVLVS
                     AVYGAGESMAVSATYRTAACPALHPDSSLSGYDLMMAFGLVAKEYASIRGVAMEPSAF
                     GVAPTFTLFKDAQLMRRVSDVHPATLPPEHTIVFLVRLLPETPREAFALWQMMAEDFQ
                     PILGVLLDAGRKSLTYFNHDSRAALQEITFDLQDAKKIFFGSFHKVHIAVGHSKIRLY
                     VDCRKVAERPIGDAGSPPTAGFITLGRLAKARGPRSSSATFQLQMLQIMCSDTWADKD
                     RCCELPALRDGETCPAFPLACTYSSETPGPPGPQGPPGLPGRNGTPGQQGHPGPKGEP
                     GPPGQTGPEGPGGQQGSPGTQGRAVQGPMGPPGAKGEKGDHGLPGLQGLSGQQGIPGK
                     TGLQGPKGMRGLEGPAGLPGPPGPRGFQGLAGASGTSGEQGPPGAVGPTGLPGSKGER
                     GEKGEPQSLATIFQLVSQACESAIRTHVMKLNSFLHENARPPMPFMAETAKLSRPRAI
                     DPGLHNKALLPGDWGHILHHEDEGEPVAISHTSKPVLQEVQTPEPLE"
ORIGIN      
        1 aaaaagctcc tcatgtcatg gtgaccctca atcatgaagt tatttttgtt actataacta
       61 tcacatctat acttttgatc acaactataa ttttgatact attatgagtc ataatgtaaa
      121 tatctgtttt ccaataatcg ttgataattc ctgtgaaagg gtcattagat gccccccaac
      181 acacacatac acacacacac acaaaggggt cacaactcac aggttaactg ctattcttgg
      241 gtgtattacc ctgcagcctt cctactggtc tgggctctgc tcacagagct ggcttccctg
      301 cagagggtaa ccttgagtat ataggaaatg caggtgcttt gttcagtggg gtggggatct
      361 gggatcctca ggattcttct caggctcaca aatttcaggc tgggtcatgc ttgtgtcccc
      421 ttctccaaaa tgccacccct aggtggtgga ctccctaccc cattgacctc tcaagtgtta
      481 tctcccaact tctgagaggt ctcaagggtt ccccagtact tttcatacct actgcgcctg
      541 cttctgctct aaccagaaat tggtctcacg tgcttgaggg caagtcactc aatgtgatga
      601 ccttgatggt aggaatctat ctaaaccaat cctagacacc atgtggggct gctgggtcct
      661 caaggtcttg ttactctggt gattcctgct gtgactatgg gttgtggctg tgaacactgg
      721 aaggggcatg ggcagatgtg ttggactgga ccctttcagg gagaattggc tccctgcaga
      781 aggaacatgg agttcacaag gaggttgtgc agctaagggt ccattgttca gcgggacgcc
      841 tcagcatggc ttcagtgctg gtcttcgatc ctcagtcttc atcgacatct ccataatgac
      901 aagccacagg cctctgggca tcacacatgt ctgtagggac atcctgctgg tccataggag
      961 tggacggaga actagctttc tggtcagggc aagggcagat ggttccttaa gtgctgaagg
     1021 gccttgacct ctcctcccac aggctgctca gtatgagcct ccaaggctcc tacctccgct
     1081 tctgcctctg gatgttcttg ggcaccacct tggcactggg gcagggacaa ggtaaggagg
     1141 caacgccccc actgcctgca gaggaactct gctgcaagcc tttgacttgc cagaagaggc
     1201 attgccctgt agagtaaatg ccaacttagc cgagctgttg cagcaacagg caagctggta
     1261 aaacagagga gagaatcccc actctcagct tttgccttga cctttgatct tgtggtcttt
     1321 cagccttgct tagggaggct tttctgtctg agttatttca agattactgg catactccac
     1381 atctgatcca gaatctatgt ttgcttggtt attctgtcaa cttttcagtg tggtttcaga
     1441 cactgcatgc atggcttagt ggagatcaac actcctgctt cctgcctccc aggaagaaaa
     1501 agccttccta cactgtctta gacgggtggt gcatctctct tctccgtaca tgtattagga
     1561 caagcgtttc catctaatcc cttcctattt ggccattcca ggctccccct gggaaagtct
     1621 cccctagtat tttctatgac ccccaaggga tatgcacagg acttgcagag tctgtgttgc
     1681 agactccttc ttgtggagct gctggctcag gtgggtccct ggaacgaatg tttctgtgtc
     1741 cccagagcct tcacactcat gggtacatct agcttccagg agcaacatgt atgttcctca
     1801 tgacacctga ctgatttgaa tctgtttctg gaattacacc aaggtctagc ctcatccaag
     1861 ttaaaaactt ctcctaccac tgctatccac agcactgcct gtggttccaa ctcagggttg
     1921 cctgaagcct aacagacctc acttcccagc aattcccctt atccagggag gtgactaccc
     1981 catggccaag tccctcagct ccctttgttc agacggagga accccaaggt ggggcctgta
     2041 ggttgaggtt tcaattagga ggaaggcttt gctgtatgaa caacttagag tgattctgta
     2101 aggcccacaa atactgtttc ccaagctcag gtctcagcat gacaggctac ccatgcatga
     2161 ctggggtggg ctggggcctc agagaccagc tgggaggtgc agctgaggtt agggagggga
     2221 tcgttactgt actgtttctg agacggaagt tctaaaatcc cctaacacac tgagggaaga
     2281 aaacagaagg ctctttatgg gcaagagtgg ggatccatgc tcacagctgg cctgtcagaa
     2341 cccccacctc atcctgacac attcctgcct ttcaataggt catggtcaga gcagtcaagc
     2401 ccatccagaa agagttcatt ctgaatgggt tattgtgtct accccaggca ccccctagtc
     2461 tttgcctatc tctttgtgcc ccagcacatg gtgaggagac tagaagaggt ctctgtcccc
     2521 attttccaaa aatatctgtc tgcagcacag agtccggaag cttcctggga ggtcagcaca
     2581 ggccctacgg tcctcctcct ccccattgac catggcttcc ccctccttca tgacaggatt
     2641 accctgtctt tgcttctttt ccttttgctg tggcaaaatg ctaacaaaag caacttatgg
     2701 ggtaaaggtt tattttagtt catcatggca gggaagccaa ggtgcagcca gtcacactgc
     2761 atctaccatc agaaagcaaa aaaggagtga atgctagtgc tcaacccatt acctcagttt
     2821 cttatagctc ctgccaaggg aatagcccca tctgcaatta aaacgtgtgt ctccacattg
     2881 ttaatgtcaa ttaacgaaat caagctgctt ccctctctct aatcccccca caggaatcct
     2941 tggagtctga tatcccaggt gactttaatt ctctaaagct gacggtacta gacatcacac
     3001 tgccattcct agtttgggag ctgaagcttg gtacacatcc cacacatgtc tacatgtagg
     3061 cacaccatgt gcacataagc agacagccat caccatagtt ccagctgagg tcctacatcc
     3121 aatctgctca caagggatac atccacctag catatgcatg cgtgcgtgcg tgcatgtgcc
     3181 tgcacacaca cacacagctg cttctatatc cctcgagagt gggagaccca aggcagctgc
     3241 caaggccctg ggctttatct ctgcatctcc agtcatcata aggcgtacac acacacaccg
     3301 ccttcccctg ggtgctggtg tgatcctcct ttgcagtggt ggaattagac cccctcctcc
     3361 tgaatctacc agtgtggcct tgtcatcaaa gatcacaagg atgtgggagc ttcatgaggc
     3421 cacaaactct ataaagacac ctaggtgggg ccgtatccct ccatgcctct tagggaaaac
     3481 ctccttctgg aggtggtcag ttggtcactg gtaagtctgc ttcacacccc aacttccaat
     3541 cctgttgtta cagtaagtag ccgtctgagg ctggcagtac tgcccgagga tcgactgcag
     3601 atgaagtgga gggaagcaga gggaagtggc cttggctatt tggtgcaagt gacacctatg
     3661 gcaggggact tggagcagga gctggtactg accaccaaga cccccaaagc cactgtgggt
     3721 ggcctgagcc cttccaagag ctacacctta cagatcttcg agctcactga ctctgggcct
     3781 gtcctgctag cacgaaggga gtttgtaatt gaggatctaa agagccaatc tttgggcaga
     3841 ggaagccgga ggctggcagg agccaccctg gagcctccct ccttccctct gagggaccca
     3901 gactctgaga aaacatctga gcccagcatt gccttcacct caagcaggga ccttcccatt
     3961 ctcggagtgg ccagtaagga tcagaggaaa ctcaagcagg gccttggagt acaagactct
     4021 gcccagccaa ccccagacct ggagaggcag agccacaccg cagtctctgt gggaaagcga
     4081 gggaagctag atgaccccca gttccagtgc acacccccaa cacctgctga cataatcttc
     4141 ctggtggatg ggtcctggag catcggccac aacaactttc agcaggtgaa agacttcctg
     4201 gctagcatca tcacacactt tgcaatagga ccagataaag tccaagtagg tctgactcag
     4261 tacagtggag acccccagac cgagtgggac ctgaactcct tccacaccaa ggagcaagtg
     4321 ctagcagcag tacaccacct ccactacaaa ggaggaaaca cgttcacagg ccttgcccta
     4381 acccatgtgc tggggcagaa cctgaagcca gcagcaggtg tccgtccaga ggcagccaaa
     4441 gtgttgattc tggtgacaga cggcaagtct caggatgatg tgcgcacagc tgccagagtc
     4501 cttaaggacc aggacattga tgtcttcact gtggcaggtg tgaagaatgt cgacgaggcc
     4561 gagctgaagc tcctggcatc ccagccgctg gacatcactg tccacaacgt gctggacttc
     4621 cctcagctga ccaccttagc ccctctgctc agccgtctta tttgccaaaa aattcagggc
     4681 agaggcccag tcaaaccagc ggcgggtact cggatcctgg accctctccc cacgcccacc
     4741 agactgaccc tgacccacgt cacctcatcc agtatccacc tgtcttggac tccggcctta
     4801 tacccacccc tcaagtatct aattgtatgg cagccttcta ggggtggtgc ccccaaggag
     4861 gtggtggtgg aggggcctgt ctcatccatg gagcttggaa acctgacctc caacacagaa
     4921 tactcggtct ctgtgcttcc tgtctacgag agtggggttg gcaagagtct gcaaggacgg
     4981 gcaaccacag cacccctgcc tccacctggg ccactgaccc tagctgcggt gacacccaga
     5041 actctccacc ttacctggca gccctctgct ggggccactc aatacttggt acagtacttg
     5101 ctggctgcct ccactgggga ggaacaaaag agagaggtac atgtaggacg gcctgaggta
     5161 gtgctggacg atctggagcc tggccaggac tatgaggttt cagtgcagag ccttcgtgga
     5221 ccagaggcca gtgaggcccg gaacatccat gccaggaccc ctgtcccggg gcccccaaga
     5281 cacctgagtt tctcagatgt gcgctacaac tcaacctgtg tgtcctggga agcccagagg
     5341 cctgtgcgcc tggtcaaggt cagctacgtc tctagcgatg gcagccactc tgggcagatt
     5401 caggttcctg ggaacgttac ctcagctact ctgggcccac tttcttcctc taccgtgtac
     5461 accatccgag tcacctgttt ttacctcagg ggtggttcct ccgtgctgac tggccatgtg
     5521 accacacaga aagcgcctag ccctagccag ttgtcggtga cggagctccc gggagataca
     5581 gtaaagctgt catggttggc cactgccttg tctggtgtac ttgtttatca gatcaagtgg
     5641 atgcccttgg gagaggggaa ggcccatgag atctctgtcc cagggaccct tggcacagcc
     5701 atcttgcctg gtctgatgaa gcatgtggaa tatgagatca ccatccttgc ctactatagg
     5761 gacggcactc gcagcgaccc cgtgtccctc cgctacaccc cctctgcagc aaacaggagc
     5821 cccccatcca gcctggcctt gtcctcggag acccccaaca gcctgcaggt cagctgggca
     5881 ccaccaagtg gccatgtcct ccattaccgg ctcaactaca cactggcctc aggctctgga
     5941 ccagagaaat cgatctctgt accaggcacc aggagccatg ttgtacttcg tgatctgatg
     6001 tctgccgcca agtacagggt cctggtctca gctgtctatg gagcagggga gagcatggca
     6061 gtgtctgcca cataccgcac agcagcctgc ccagccctgc acccggacag ttccctctca
     6121 gggtatgacc tgatgatggc ctttggcctt gtggcaaagg agtatgcctc tattcgaggg
     6181 gtggctatgg agccctcagc cttcggtgtg gccccaacct tcactctctt caaggatgct
     6241 caactgatgc ggcgggtcag tgacgtccac ccagcaaccc tgccaccaga acacaccatt
     6301 gtcttccttg tgcgtctact tcctgaaaca ccccgggaag cctttgcact gtggcagatg
     6361 atggctgaag acttccagcc tatcctcggg gttcttctgg atgctggcag aaagtctctg
     6421 acttacttca accatgattc cagagcagcc ttgcaggaga tcacctttga cctgcaggat
     6481 gcaaagaaga ttttctttgg aagcttccac aaggtacata tagctgtagg ccactctaag
     6541 atcagacttt acgtggactg tcggaaggtg gctgagcggc ccattgggga tgctggcagc
     6601 ccacccacag ctggtttcat cacactaggg aggctagcca aggccagagg gccacggagc
     6661 agctcagcca cattccagct ccagatgttg cagatcatgt gcagcgatac gtgggcggac
     6721 aaggacaggt gctgcgagct tcctgcattg agggatggag agacatgccc ggccttccct
     6781 ttagcctgta cctactcatc tgagacccct gggccaccag ggccccaagg ccctccaggc
     6841 ctccctggaa ggaatggcac tccaggacag cagggacacc caggacccaa gggagagcct
     6901 ggcccacctg gacaaacagg acccgaaggc cctggaggtc agcaggggtc accagggacc
     6961 cagggccgtg cagtccaggg acccatgggg ccaccaggag ccaaaggaga gaagggggat
     7021 cacggcctcc cgggcttgca gggcctctct ggccagcaag gcatccctgg gaaaactggc
     7081 ctacaaggac caaagggaat gagaggactg gagggacctg ctgggctgcc tggaccacct
     7141 ggccccaggg gattccaggg cttggcaggg gccagcggta ccagtggaga gcaagggccc
     7201 ccaggagctg tgggtcccac aggtctacca gggtccaaag gtgaacgagg agagaaggga
     7261 gagccacagt cccttgccac catcttccag ctggtgagcc aggcctgcga gtcagccata
     7321 cggacacacg tgatgaagct gaattccttc cttcatgaga atgcccgtcc cccgatgccc
     7381 ttcatggcag agacagccaa gctaagcaga cccagagcta tagatcctgg attacacaac
     7441 aaggctctac ttcctggaga ctggggacat atcctccacc atgaggatga aggtgagcct
     7501 gtggctatca gccacacaag caaacctgta ctgcaggagg tgcagacccc agagcccctg
     7561 gagtgaacag gaccttccct ctgccacttc aactcgcccc gtccttcccc agcaccatca
     7621 tccataattt tgtctcaaca ctgagagcaa ctgtgctctg caggggcaga gaaggaaacc
     7681 caaaggaaga ccctgaagtg gcaggagtcg gaagggagga gggtggggct cctcctcaag
     7741 ccccttcttt atagcatttc caggttcaga taaacttgtg ctagctcatc a
//
