LOCUS       NM_001109172            3146 bp    mRNA    linear   ROD 05-AUG-2024
DEFINITION  Rattus norvegicus collagen type XIII alpha 1 chain (Col13a1), mRNA.
ACCESSION   NM_001109172 XM_001056763 XM_574755
VERSION     NM_001109172.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3146)
  AUTHORS   Nakakura,T., Horiguchi,K. and Suzuki,T.
  TITLE     Collagen XIII Is the Key Molecule of Neurovascular Junctions in the
            Neuroendocrine System
  JOURNAL   Neuroendocrinology 114 (7), 658-669 (2024)
   PUBMED   38643753
  REMARK    GeneRIF: Collagen XIII Is the Key Molecule of Neurovascular
            Junctions in the Neuroendocrine System.
REFERENCE   2  (bases 1 to 3146)
  AUTHORS   Tu,H., Sasaki,T., Snellman,A., Gohring,W., Pirila,P., Timpl,R. and
            Pihlajaniemi,T.
  TITLE     The type XIII collagen ectodomain is a 150-nm rod and capable of
            binding to fibronectin, nidogen-2, perlecan, and heparin
  JOURNAL   J Biol Chem 277 (25), 23092-23099 (2002)
   PUBMED   11956183
REFERENCE   3  (bases 1 to 3146)
  AUTHORS   Sund,M., Vaisanen,T., Kaukinen,S., Ilves,M., Tu,H.,
            Autio-Harmainen,H., Rauvala,H. and Pihlajaniemi,T.
  TITLE     Distinct expression of type XIII collagen in neuronal structures
            and other tissues during mouse development
  JOURNAL   Matrix Biol 20 (4), 215-231 (2001)
   PUBMED   11470398
REFERENCE   4  (bases 1 to 3146)
  AUTHORS   Sandberg-Lall,M., Hagg,P.O., Wahlstrom,I. and Pihlajaniemi,T.
  TITLE     Type XIII collagen is widely expressed in the adult and developing
            human eye and accentuated in the ciliary muscle, the optic nerve
            and the neural retina
  JOURNAL   Exp Eye Res 70 (4), 401-410 (2000)
   PUBMED   10865988
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474016.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_574755.2, XM_001056763.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN16676787,
                              SAMN16676788 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3146
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     gene            1..3146
                     /gene="Col13a1"
                     /note="collagen type XIII alpha 1 chain"
                     /db_xref="GeneID:499431"
                     /db_xref="RGD:1595704"
     exon            1..756
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     CDS             469..2688
                     /gene="Col13a1"
                     /note="procollagen, type XIII, alpha 1; collagen, type
                     XIII, alpha 1"
                     /codon_start=1
                     /product="collagen alpha-1(XIII) chain"
                     /protein_id="NP_001102642.1"
                     /db_xref="GeneID:499431"
                     /db_xref="RGD:1595704"
                     /translation="MVAERARKAAASSNRGPGDLGAPGPGTVALAEQCARLPSPGCCG
                     LLALALCSLALSLLAHFRTAELQARVLRLESERGEQQMEKAILGRVNQLLDEKWKFYS
                     RRRREAPKMSPGCNCPPGPPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDAGI
                     SIIGPRGPPGQPGTRGFPGFPGPIGLDGRPGHPGPKGETGLVGPRGQPGPQGQKGEKG
                     QCGEYPHREYPSGTLAALRSNPIISLKLLPLLNSVRLAPPPVIKRRTFQGEQSQAGIQ
                     GPPGPPGPPGPIGPLGHPGLPGPIGPPGLPGPPGPKGDPGIQGYHGRKGERGLPGMPG
                     KHGAKGAPGIAVAGMKGEPGTPGAKGEKGATGSPGLLGQKGEKGDAGNAIGGGRGEPG
                     PPGLPGPPGPKGEAGVDGQAGPPGQQGDKGQPGAAGEPGPTGPKGSKGEPGKGEMVDY
                     NSSINEALQEIRTLALMGPPGLPGQTGPPGPPGTPGQRGEIGLPGPPGHDGDKGPRGK
                     PGDMGPAGPQGPPGKDGPPGMKGEVGPPGNPGEKGETGQAGPPGLDGPTGEKGEPGDE
                     GRPGATGLPGPIGLPGFTGEKGEAGEKGDPGAEVPGPPGPEGPPGPPGLQGIPGPKGE
                     AGLDGSKGEKGSQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAA
                     GLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK"
     exon            757..826
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            827..834
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            835..861
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            862..897
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            898..924
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            925..975
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            976..1011
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..1038
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1065
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1092
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1119
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1146
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1147..1203
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1269
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1270..1377
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1378..1404
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1440
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1485
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1486..1518
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1545
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1590
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1591..1677
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1678..1731
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1732..1776
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1777..1845
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1846..1869
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1870..1932
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1933..1977
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1978..2121
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2122..2220
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2221..2265
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2266..2307
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2308..2334
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2335..2415
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2416..2469
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2470..2523
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2524..2559
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2560..2646
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2647..2685
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
     exon            2686..3146
                     /gene="Col13a1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctgtgtca agttacagag gcgccggaat cggccccagc gcggctcact gcagccacga
       61 cccacctctg cccatggggc cctgcatgcg cgccccttcg cccggggact gacacccgct
      121 ctccccggag acacaaaaca cccagaagga ccccgagcgt cgcacgagcc cgaggactct
      181 gcagaagcgg gaagggaaag agcgggcagt ggagccagat ccctgaactt ggaacattct
      241 tcgaaataac ttttttctta ctttggtgta ccccgatcgc gtctgttgct cttggctgcc
      301 ctcaactccg actgctcatt tttggtcctt tttggcgagc aaaggaaagg gacgtcctct
      361 agccacgcta gctccctttc accctgcttc ttagtttgga tcgcacctct ttgatctcat
      421 ttttatttat tctatttatt tatttattgg ctctcaagac gcgaggggat ggtggcggag
      481 cgcgcccgca aagcggcagc ctccagcaac cgcggccctg gggatctggg cgcgccaggg
      541 cccgggacag tggcgctggc tgagcagtgc gctaggctgc cgagccccgg gtgctgcgga
      601 ctgctggctc tggcgttgtg ctcgctggcg ctcagcctgc tcgcccactt tcggacggcc
      661 gagctgcagg cccgggtgct gcgcctggaa tcggagcgcg gggaacagca gatggagaaa
      721 gctattttgg gacgagtcaa ccaactgctg gacgagaaat ggaagttcta ctcgcgcagg
      781 cgcagggagg ccccgaagat gtctccagga tgtaactgcc caccaggacc gcctggcccc
      841 actggaagac ctggactccc aggggacaag ggtgccatcg ggatgcctgg acgcgtgggt
      901 gtcaaaggtc aaccaggcga gaagggtgcc cctggagatg cggggatatc catcatcggg
      961 ccacgaggcc cccctggcca gccaggtacc cgaggcttcc ctggattccc gggtcccatt
     1021 ggtcttgacg gcagaccggg ccatcccgga cctaaagggg agacgggcct ggtgggtcct
     1081 cgaggacaac cgggacctca gggacaaaag ggagaaaagg gtcagtgtgg agaataccca
     1141 caccgggagt atccgagcgg cacgctagca gctctgcgct ccaacccgat aatttccctg
     1201 aagctgctgc ctctcctcaa ttcagtgcgg ctggctccac ccccagtcat taaaaggcgg
     1261 acctttcagg gggaacaaag ccaggctggc atccaaggcc ctccagggcc accgggcccc
     1321 ccaggaccaa ttggccctct gggacaccca ggactgccag ggcctatagg gccacctggt
     1381 ttacccgggc ctcctggacc aaagggagac ccagggatcc agggctatca tggccgcaag
     1441 ggagagcggg gcttgccagg aatgccaggc aagcatggag ccaagggtgc tcctgggatt
     1501 gccgtggctg ggatgaaggg tgagccaggg acgccaggag ccaagggtga gaagggtgct
     1561 acaggctccc ctggcctcct ggggcagaag ggagaaaagg gagatgctgg caacgccatt
     1621 ggaggaggca ggggagagcc tggccccccg gggctccctg ggccccctgg gccaaaggga
     1681 gaagctggtg tcgatggaca ggctggtccc ccaggacagc aaggagacaa ggggcagcca
     1741 ggagcagctg gcgaaccggg accaactggc cccaagggtt ccaagggtga acccggcaag
     1801 ggagagatgg tggactacaa cagcagcatc aacgaggctc ttcaggagat caggacgctg
     1861 gccttgatgg ggcctcctgg tcttcctgga caaacaggcc cacccggacc tccagggact
     1921 ccaggccaaa ggggggagat tggattgcca ggccctccag gacacgatgg ggacaagggg
     1981 cctcgaggaa aaccaggaga tatggggcct gctggtcctc aaggaccccc aggaaaggac
     2041 gggcctccag gaatgaaggg agaggttgga cctccaggaa atccagggga gaaaggggag
     2101 acaggacaag caggcccccc gggtctagac ggcccaactg gggagaaagg agaaccaggt
     2161 gatgaaggga ggcctggagc gacaggattg cctgggccca tcgggctccc gggattcaca
     2221 ggagagaaag gagaggctgg ggagaaaggt gacccaggag cagaggtgcc tgggccgcca
     2281 gggccagagg gtcctccagg accgccgggc ctccaaggta ttccaggacc aaagggagaa
     2341 gcaggcctag atggcagtaa aggagagaag ggctcccagg gagaaaaagg agaccggggg
     2401 cctctgggat tgcctggtac tccaggacca atcggggttc caggcccagc cggaccaaag
     2461 ggcgaaaggg gcagcaaggg agacccaggg atgacgggac caacaggagc agctgggctg
     2521 cctggtttac acggaccacc cggggacaaa ggaaaccggg gggagagggg gaagaagggc
     2581 tctagagggc ctaaagggga caagggggac caaggagcac ctggactaga cgccccctgc
     2641 ccactgggag aagatggctt accagtccaa ggctgctgga acaagtgatg cctctaacct
     2701 cggactggcc tgtgtgtgtt tgtatatagg atatttattt ttatacagtt tcacctttgg
     2761 aaaatgccca aactatgata catcttacag atcattaaaa gagaaagaag aaaagcctgc
     2821 atattttgta caggaaataa cccctttccc ttttgtttac aagacatttt tttttgtata
     2881 aatctgtttc taatacactt tctgtctgtg tgtctgctcc taatgttgca tgatatttgt
     2941 gcacacttat taaatatcac agcttaataa attattgtgt gatggtgcca aaggggcctt
     3001 gtctgcatag gggtgctgcg agcttacgtg tgaattccca aaaaatgtgg aggtccacgg
     3061 tgtttgccag acgacatgtg tctgacaata ttttaaactt taactgactt tcattattat
     3121 aaaaaaaata aaacgtggca atttca
//
