LOCUS       NP_001102642             739 aa            linear   ROD 05-AUG-2024
DEFINITION  collagen alpha-1(XIII) chain [Rattus norvegicus].
ACCESSION   NP_001102642 XP_001056763 XP_574755
VERSION     NP_001102642.1
DBSOURCE    REFSEQ: accession NM_001109172.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (residues 1 to 739)
  AUTHORS   Nakakura,T., Horiguchi,K. and Suzuki,T.
  TITLE     Collagen XIII Is the Key Molecule of Neurovascular Junctions in the
            Neuroendocrine System
  JOURNAL   Neuroendocrinology 114 (7), 658-669 (2024)
   PUBMED   38643753
  REMARK    GeneRIF: Collagen XIII Is the Key Molecule of Neurovascular
            Junctions in the Neuroendocrine System.
REFERENCE   2  (residues 1 to 739)
  AUTHORS   Tu,H., Sasaki,T., Snellman,A., Gohring,W., Pirila,P., Timpl,R. and
            Pihlajaniemi,T.
  TITLE     The type XIII collagen ectodomain is a 150-nm rod and capable of
            binding to fibronectin, nidogen-2, perlecan, and heparin
  JOURNAL   J Biol Chem 277 (25), 23092-23099 (2002)
   PUBMED   11956183
REFERENCE   3  (residues 1 to 739)
  AUTHORS   Sund,M., Vaisanen,T., Kaukinen,S., Ilves,M., Tu,H.,
            Autio-Harmainen,H., Rauvala,H. and Pihlajaniemi,T.
  TITLE     Distinct expression of type XIII collagen in neuronal structures
            and other tissues during mouse development
  JOURNAL   Matrix Biol 20 (4), 215-231 (2001)
   PUBMED   11470398
REFERENCE   4  (residues 1 to 739)
  AUTHORS   Sandberg-Lall,M., Hagg,P.O., Wahlstrom,I. and Pihlajaniemi,T.
  TITLE     Type XIII collagen is widely expressed in the adult and developing
            human eye and accentuated in the ciliary muscle, the optic nerve
            and the neural retina
  JOURNAL   Exp Eye Res 70 (4), 401-410 (2000)
   PUBMED   10865988
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474016.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XP_574755.1, XP_001056763.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN16676787,
                              SAMN16676788 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Rattus norvegicus"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     Protein         1..739
                     /product="collagen alpha-1(XIII) chain"
                     /note="procollagen, type XIII, alpha 1; collagen, type
                     XIII, alpha 1"
                     /calculated_mol_wt=71869
     Region          <135..>381
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <357..>600
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <492..>723
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     CDS             1..739
                     /gene="Col13a1"
                     /coded_by="NM_001109172.1:469..2688"
                     /db_xref="GeneID:499431"
                     /db_xref="RGD:1595704"
ORIGIN      
        1 mvaerarkaa assnrgpgdl gapgpgtval aeqcarlpsp gccgllalal cslalsllah
       61 frtaelqarv lrlesergeq qmekailgrv nqlldekwkf ysrrrreapk mspgcncppg
      121 ppgptgrpgl pgdkgaigmp grvgvkgqpg ekgapgdagi siigprgppg qpgtrgfpgf
      181 pgpigldgrp ghpgpkgetg lvgprgqpgp qgqkgekgqc geyphreyps gtlaalrsnp
      241 iislkllpll nsvrlapppv ikrrtfqgeq sqagiqgppg ppgppgpigp lghpglpgpi
      301 gppglpgppg pkgdpgiqgy hgrkgerglp gmpgkhgakg apgiavagmk gepgtpgakg
      361 ekgatgspgl lgqkgekgda gnaigggrge pgppglpgpp gpkgeagvdg qagppgqqgd
      421 kgqpgaagep gptgpkgskg epgkgemvdy nssinealqe irtlalmgpp glpgqtgppg
      481 ppgtpgqrge iglpgppghd gdkgprgkpg dmgpagpqgp pgkdgppgmk gevgppgnpg
      541 ekgetgqagp pgldgptgek gepgdegrpg atglpgpigl pgftgekgea gekgdpgaev
      601 pgppgpegpp gppglqgipg pkgeagldgs kgekgsqgek gdrgplglpg tpgpigvpgp
      661 agpkgergsk gdpgmtgptg aaglpglhgp pgdkgnrger gkkgsrgpkg dkgdqgapgl
      721 dapcplgedg lpvqgcwnk
//
