LOCUS       XM_001053056            3080 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus collagen type X alpha 1 chain
            (Col10a1), mRNA.
ACCESSION   XM_001053056
VERSION     XM_001053056.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by NM_013140.1.
            
            On Jan 21, 2021 this sequence version replaced XM_001053056.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3080
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3080
                     /gene="Col10a1"
                     /note="collagen type X alpha 1 chain; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 51 ESTs, 7 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:25681"
                     /db_xref="RGD:2371"
     CDS             7..2049
                     /gene="Col10a1"
                     /codon_start=1
                     /product="collagen alpha-1(X) chain"
                     /protein_id="XP_001053056.5"
                     /db_xref="GeneID:25681"
                     /db_xref="RGD:2371"
                     /translation="MLPQIPFLLLVSLTLVHGTFYAERYQTPTGVKSALASPRTQYFI
                     PYPIKGKEISVRGEQGIPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGI
                     SATGKPGLPGKPGERGPHGHKGDIGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGL
                     TGAPGSRGFPGEKGAPGAPGVNGQKGETGYGTPGRPGERGLPGPQGPVGPPGSPGVGR
                     RGENGFPGQPGIKGDRGFPGEAGPPGPPGPQGPPGKQGREGIGKPGATGSPGRPGIPG
                     EKGHPGAPGIAGPPGAPGFGKQGLPGLRGQRGPAGLPGAPGAKGEQGPAGHPGEPGLT
                     GSPGNMGPQGPKGIPGNHGIPGTKGETGLVGPAGPPGARGARGPPGLDGKTGYPGDPG
                     LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGVPGHNGEAGPRGEPGIPGTRGP
                     IGPPGIPGFPGSKGDPGKPGAPGPAGIVTKGLNGPAGPPGRPGPRGHTGEPGLPGPPG
                     PPGPPGPPSQAVIPDGFTKSGQRPRLSGMPLVSANQGVTGMPVSAFTVILSKAYPAVG
                     APIPFDEILYNRQQHYDPRSGIFTCKIPGIYYFSYHIHVKGTHVWVGLYKNGTPTMYT
                     YDEYSKGYLDQASGSAIMELTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLVAPI"
ORIGIN      
        1 gaaaatatgc tgccacaaat accctttctg ctgctagtgt ccttgacgct ggttcatgga
       61 acgttttatg ctgagcggta ccaaactccc acaggtgtga agagcgcact tgccagcccc
      121 aggacacaat acttcatccc ataccctata aagggtaaag agatttcagt aagaggagaa
      181 caaggcattc ctggtccacc aggcccagct ggacctcgag gacacccagg tccctcagga
      241 cctccaggaa agccaggcta tggaagtcct ggactccaag gagagccagg gttgccagga
      301 ccaccaggaa tatcagccac tgggaagccg ggcctgccag gcaaaccagg ggagagagga
      361 ccacatggac acaaaggaga tattggccca gctggcttac cagggcctcg gggccctcca
      421 ggcccacccg gaatccctgg tccagctgga atttctgtgc caggaaaacc cggacagcag
      481 ggacttacag gtgctccagg atctaggggc tttcctggag aaaagggggc accaggagct
      541 cctggtgtga atggacagaa aggggaaacc ggatatggca ctcctggccg tccaggtgag
      601 aggggtcttc caggccctca gggtcctgta ggcccccctg gctcccctgg agtgggaaga
      661 agaggtgaaa atggctttcc gggacagcct ggcataaaag gtgaccgggg tttcccagga
      721 gaagcgggac cacccggtcc accaggtcca caaggtcctc ctgggaagca aggacgagaa
      781 ggtattggga agccaggagc cactggatcc cccggtcggc caggtatccc aggagaaaaa
      841 ggccacccag gggctccagg aatagctggg cctccaggag ctcctggctt tggaaaacaa
      901 ggcttgccag gtttgagggg acaaagggga cctgctggtc ttcctggggc tccaggtgcc
      961 aaaggggaac aagggccagc aggtcatcct ggtgaaccag gtctgactgg atcccctggg
     1021 aatatgggac cccaaggacc taaaggaatc ccagggaatc atggtatccc aggcactaaa
     1081 ggtgagacag gtctggtggg gcctgcaggg ccacccgggg ctagaggagc aaggggcccc
     1141 cctgggttag atggaaaaac aggatatcct ggggatccag gtctcaatgg tcctaagggt
     1201 aacccagggt taccaggacc aaaaggtgat cctggagtgg gaggagcccc tggtcttcga
     1261 ggtcttgttg gccctacagg acctaaagga gtgcctggac acaatggtga ggcaggtcca
     1321 agaggtgaac ctggaatacc aggtaccagg ggccctattg gaccaccagg tatcccagga
     1381 ttccctggat ctaagggtga cccaggaaag ccaggtgctc cgggcccagc tggaatagta
     1441 actaagggcc tcaatgggcc cgctggtcct ccagggcgtc ctggtccaag aggtcatact
     1501 ggagagcctg gtctcccagg tcctccagga cccccaggac ctccaggacc tcccagccaa
     1561 gcagtcatac ctgatggctt cacaaagagc ggacagagac ccaggctttc tgggatgcct
     1621 cttgtcagtg ctaaccaggg ggtaacaggc atgccggtgt ccgcttttac tgtgattctt
     1681 tccaaagctt acccagcggt aggtgctccc atcccatttg atgagattct gtacaacagg
     1741 cagcagcact atgacccaag atctggaatc tttacctgta agatcccagg catatactat
     1801 ttttcctatc acatccatgt gaaggggact cacgtttggg taggcctgta taagaatggc
     1861 acgcccacaa tgtacacgta tgatgagtac agcaaaggct acttggatca ggcttcaggg
     1921 agcgcgatca tggagctcac ggaaaatgac caggtgtggc tccagttgcc caatgcggaa
     1981 tcgaacggcc tctactcctc tgagtatgtc cactcgtcct tctcaggatt cctagtggct
     2041 cccatatgaa cacttcctgt caagctcatc ctaatccccc gcttagaacc tcccacccca
     2101 ttccatcgcc cgatcccgcc ctggtgatgc atatggaggt aggctaaaag taatgtgaat
     2161 aagctttcta aagtgcactc cgggaccagg tttcctcctg taagagtgag cagcaatagt
     2221 gggtatgtga ggatcctccc gaacactcgg cagttctaag gccctgggtg cagggtcggg
     2281 ggtgctcctg tcgtcccatc cttatttaaa tttcttaacg taagtttaaa aaaaaaacaa
     2341 aaaacctccc aaaaactgaa ataaggctct agcgcatcat gaatctcgtt ttaagaactc
     2401 aacattcctt tttcaaaaaa gtccaatttt aataatatga gaatatctcg gaaacatgca
     2461 ggagatatca tgtcacttta tattacttta aatacttgaa tattcaaatt caaatgacac
     2521 tgtccacctt aggatatttc tgatggtgca tcactccatg gttcacacaa ccccttacat
     2581 cgagataaag tcagatgcac ggatagattt ttttgaagtg ctcctaagaa actaaaacac
     2641 tgtagtgaag ttaatttcaa ttacaaggtg ctttaccaca gccatttcga gcttttctgc
     2701 aacggcagga agtccacgta cctggggcaa cttagaaaaa gtccacatac ctggtgcaac
     2761 ttagaaacag gtgtctgact tactcttatg tcagcaacgc agtattacta tggtataatt
     2821 tctggcatct ttgtcaaatg attttaatgg gcttatacga catcagaata gacactctgt
     2881 gtgccttcta ttccactgga agtataaatt aacattaagc ttttcaaagt cagactgaaa
     2941 acgaaaagac attatttatt tatgctctgt actgtatttt taccgttact gtttaaaact
     3001 gggaagctgt acctcactta ctaaagcacg cagtatttaa tctacttggt attacgagat
     3061 aataaaacaa ctggaataca
//
