LOCUS       NM_001004262            2177 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus component of oligomeric golgi complex 6 (Cog6),
            mRNA.
ACCESSION   NM_001004262 XM_227136
VERSION     NM_001004262.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Lubbehusen,J., Thiel,C., Rind,N., Ungar,D., Prinsen,B.H., de
            Koning,T.J., van Hasselt,P.M. and Korner,C.
  TITLE     Fatal outcome due to deficiency of subunit 6 of the conserved
            oligomeric Golgi complex leading to a new type of congenital
            disorders of glycosylation
  JOURNAL   Hum Mol Genet 19 (18), 3623-3633 (2010)
   PUBMED   20605848
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Loh,E. and Hong,W.
  TITLE     The binary interacting network of the conserved oligomeric Golgi
            tethering complex
  JOURNAL   J Biol Chem 279 (23), 24640-24648 (2004)
   PUBMED   15047703
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079442.1.
            
            On Sep 10, 2004 this sequence version replaced XM_227136.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079442.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q26"
     gene            1..2177
                     /gene="Cog6"
                     /note="component of oligomeric golgi complex 6"
                     /db_xref="GeneID:310411"
                     /db_xref="RGD:1303283"
     exon            1..155
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     CDS             3..1976
                     /gene="Cog6"
                     /note="COG complex subunit 6"
                     /codon_start=1
                     /product="conserved oligomeric Golgi complex subunit 6"
                     /protein_id="NP_001004262.1"
                     /db_xref="GeneID:310411"
                     /db_xref="RGD:1303283"
                     /translation="MADTSGEVAAVPASGAANGLSNGAGATPAQPNNPLSRKLHKILE
                     TRLENDKEMLEALKALSAFFVENSLRTRRNLRGDIERRSLAINEEFVSIFKDVKEELE
                     SINEDVQAMSSCCQDMTSRLQAAKEQTQDLIVKTTKLQAENQRLEIRAQVADAFLSKF
                     QLTSDEMTLLRGTRGGPVTEDFFKALGRVKQIHNDVKVLLRTNQQTAGLEIMEQMALL
                     QETAYERLYRWAQSECRALTQESCDVSAVLTQAMEALQDRPVLYKYTLDEFGTARRST
                     VVRGFIDALTRGGPGGTPRPIEMHSHDPLRYVGDMLAWLHQATASEKEHLEALLKHVT
                     AQGVKENIQEVVGHITEGVCRPLKVRIEQVILAEPGAVLLYKISNLLKFYHHTISGIV
                     GNSAATLLTTIEEMHLLSKKIFFSSLSLHANKLMDKIELPPPDLGPSSALSQTLTLLR
                     DVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSASNLGTADMATFMVNSLYMM
                     KTTLALFEFTDRRLEMLQFQIEAHLDTLINEQASYVLTRVGLSYIYNTIQQHRPDQGS
                     LASMPNLDSVALKAAMAQFDRYLSAPDHLLMPQLNSLLSATVKEQIIKQSTELVCRAY
                     GEVHAAVMNPVNAYKDPESILHRSPEQVKTLLS"
     exon            156..299
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            300..371
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            372..430
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            431..542
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            543..625
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            626..696
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            697..790
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            791..919
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            920..1011
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..1076
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1168
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1169..1286
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1287..1418
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1586
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1587..1694
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1695..1748
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1749..1828
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
     exon            1829..2152
                     /gene="Cog6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgatggctga caccagcggg gaggtggcgg cggtccccgc ctccggggcc gccaatggcc
       61 tcagcaatgg ggctggcgcg accccagcgc agcccaacaa cccgctgtcg cgcaagctgc
      121 acaagatcct ggaaacgcgg cttgaaaatg acaaggagat gttggaagct ctcaaggccc
      181 tctcagcctt ttttgttgaa aatagtttgc ggactcgacg gaatctacgc ggtgatattg
      241 aacgtagaag cttagccatc aatgaggaat ttgtaagcat tttcaaagat gtaaaggagg
      301 aactcgaaag catcaatgaa gacgtacaag caatgagcag ctgctgtcag gacatgacaa
      361 gccgcttaca ggcagcaaag gaacagactc aagatttaat agtaaagacc actaagcttc
      421 aagcggaaaa ccaaagacta gaaattagag cacaagttgc agatgccttt ttatccaagt
      481 tccagttgac ttctgatgaa atgactctcc tccgaggtac aagaggaggc cccgttactg
      541 aggacttttt caaggctttg ggaagagtga aacaaattca taatgacgtc aaagttcttt
      601 tgagaaccaa ccagcagacg gcaggtttgg agattatgga acagatggcc ttgcttcaag
      661 aaactgctta tgaaagactt taccggtggg ctcaaagcga gtgcagagca ctgactcagg
      721 agtcctgtga tgtgtctgcg gtgttaactc aggccatgga agccctgcag gacaggcctg
      781 tcttgtacaa gtatacctta gatgaatttg gaacggccag gcgaagcact gtggttcgtg
      841 ggtttattga tgctcttaca agaggagggc caggaggtac acctagaccc attgaaatgc
      901 actcccatga cccgctgagg tatgtgggag acatgctggc ctggctccat caagctactg
      961 cctctgagaa ggaacatctg gaagctctct taaagcatgt aactgcacag ggtgttaaag
     1021 aaaatattca agaagttgtt gggcatatca ccgagggtgt gtgtcggcct ctaaaggttc
     1081 gaattgaaca agtaatactt gctgaacctg gggcagtgtt attatataaa atttctaacc
     1141 tcctcaagtt ttaccaccat accatcagtg gcattgttgg aaatagtgca gctactctac
     1201 tgacaacaat tgaagaaatg cacttgctaa gcaaaaaaat attcttcagt agcttgagtc
     1261 tccatgcgaa taaactgatg gacaagatcg agctcccacc acctgacctc ggacccagtt
     1321 ctgccctgag tcagaccctc actttgctgc gggacgttct ggcctcacat gattcttcag
     1381 tggtcccctt ggatgctcgg caagctgact ttgtgcaggt tttgtcatgt gtcctggatc
     1441 ctctcctcca gatgtgcaca gtgtcagcca gcaatttagg caccgctgac atggccacgt
     1501 tcatggtcaa ttcactgtac atgatgaaga cgacactggc tctgtttgaa ttcacagaca
     1561 ggcgcctgga aatgcttcag tttcagatcg aagcccatct ggacactctt atcaatgagc
     1621 aagcctctta cgttttaact agagtgggct tgagttacat ctacaacacg atacagcagc
     1681 ataggcctga tcagggctcc ttagccagta tgcccaacct agattctgtg gcgctgaagg
     1741 ctgcaatggc tcagttcgac cgctacctct cagccccaga tcacctgctg atgccacagc
     1801 tgaactccct cctcagtgcc accgtgaagg agcagattat aaagcagtct acggagctcg
     1861 tctgcagagc ctacggggag gtgcatgcag ccgtgatgaa tccagtcaac gcgtacaaag
     1921 acccggagag catccttcac aggtcacccg agcaggtgaa gacgctgctc tcttgatgtt
     1981 gatggcgttt gcagagtatt gctgcctggc aacagcacca agggtggttt gggcttttaa
     2041 tctatgagtc tttaccttga agattgagag ttaatagttt tccttgtatg gggttgtagg
     2101 tcaatttctc ccattctcag ctaacttgga ggtaaatcaa tattgacttg aaaaaaaaaa
     2161 aaaaaaaaaa aaaaaaa
//
