LOCUS       NM_001398787            2667 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus component of oligomeric golgi complex 5 (Cog5),
            mRNA.
ACCESSION   NM_001398787 XM_039078122
VERSION     NM_001398787.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2667)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 2667)
  AUTHORS   Loh,E. and Hong,W.
  TITLE     The binary interacting network of the conserved oligomeric Golgi
            tethering complex
  JOURNAL   J Biol Chem 279 (23), 24640-24648 (2004)
   PUBMED   15047703
REFERENCE   3  (bases 1 to 2667)
  AUTHORS   Ungar,D., Oka,T., Brittle,E.E., Vasile,E., Lupashin,V.V.,
            Chatterton,J.E., Heuser,J.E., Krieger,M. and Waters,M.G.
  TITLE     Characterization of a mammalian Golgi-localized protein complex,
            COG, that is required for normal Golgi morphology and function
  JOURNAL   J Cell Biol 157 (3), 405-415 (2002)
   PUBMED   11980916
REFERENCE   4  (bases 1 to 2667)
  AUTHORS   Walter,D.M., Paul,K.S. and Waters,M.G.
  TITLE     Purification and characterization of a novel 13 S hetero-oligomeric
            protein complex that stimulates in vitro Golgi transport
  JOURNAL   J Biol Chem 273 (45), 29565-29576 (1998)
   PUBMED   9792665
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 23, 2021 this sequence version replaced XM_039078122.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643287.15820.1,
                                           SRR26360186.1674956.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-115               JAXUCZ010000006.1  53969982-53970096
            116-255             JAXUCZ010000006.1  53976450-53976589
            256-313             JAXUCZ010000006.1  53980998-53981055
            314-368             JAXUCZ010000006.1  53985873-53985927
            369-438             JAXUCZ010000006.1  53986456-53986525
            439-559             JAXUCZ010000006.1  54002895-54003015
            560-690             JAXUCZ010000006.1  54094224-54094354
            691-856             JAXUCZ010000006.1  54124511-54124676
            857-969             JAXUCZ010000006.1  54131972-54132084
            970-1047            JAXUCZ010000006.1  54132395-54132472
            1048-1129           JAXUCZ010000006.1  54154104-54154185
            1130-1334           JAXUCZ010000006.1  54170610-54170814
            1335-1496           JAXUCZ010000006.1  54177044-54177205
            1497-1596           JAXUCZ010000006.1  54180568-54180667
            1597-1707           JAXUCZ010000006.1  54207138-54207248
            1708-1770           JAXUCZ010000006.1  54208012-54208074
            1771-1874           JAXUCZ010000006.1  54220213-54220316
            1875-2112           JAXUCZ010000006.1  54224197-54224434
            2113-2189           JAXUCZ010000006.1  54230182-54230258
            2190-2316           JAXUCZ010000006.1  54250862-54250988
            2317-2396           JAXUCZ010000006.1  54251724-54251803
            2397-2667           JAXUCZ010000006.1  54256229-54256499
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..2667
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /note="component of oligomeric golgi complex 5"
                     /db_xref="GeneID:314030"
                     /db_xref="RGD:1563296"
     exon            1..115
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     CDS             22..2511
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /codon_start=1
                     /product="conserved oligomeric Golgi complex subunit 5"
                     /protein_id="NP_001385716.1"
                     /db_xref="GeneID:314030"
                     /db_xref="RGD:1563296"
                     /translation="MEGGDSTVSVAGRGASGSAAVAATVQELLQDDCYSEFLSEDFDV
                     KTYTSQSIHQAVIAEQLAKLAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQM
                     MQTRIGALQGAVDRMKSKIVEPYNKIVARTAQLARLQVACDLLRRIIRILYLSKRLQG
                     QLQGGSREITKAAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQ
                     GVETQNPTQVGTALQVFHNLGTLKDTVTNVVDGYCAALEDSINNALDVKVLTQPSQSA
                     ARGGPGRATMPTPGNTAAFRASLWTNMEKLMDHICAACGQVQHLQKVLTKKRDPVSHI
                     CFIEEIVKDGQPEILYMFWNAVTLALSSHFHAATDSSMFLKQAFEGEYPKLLRLYNDL
                     WKRLQQYSQNSQGAFGTRGTADLYADLPDVDDDAQDMSTLKRPDYDPEKALKDSLQPY
                     EAAYLSKSLSRLFDPINLVFPPGGRNPPSSDELDGIIKTIASELNVAAVDANLTLAVS
                     KNVAKTIQLYAVKSEQLLSTQGDASQVIGPLTEGQKRNVGVVNSLFKLHQSVTKVVAS
                     QSSFSAAAEQTIMSALKTIHDLMGNAIQPLLTSVADAIEAIIITVHQEDFSGSLTSSG
                     KPDVPCSLYMKELQGFIARVMNDYFKHFECLDFVFDNTEAIAQRAIELFIRNASLIRP
                     LGEGGKLRLAADFAQMELAVGPLCRRVSDLGKSYRMLRSFRPLLFQTSEHVADSPAVG
                     DIIPFSIIIQFLFTRAPAELKSPFQRAEWSHARFSQWLDDHPSEKDRLLLLRGALEAY
                     VQSVRGREGKEFAPVYPILVQLLQKAMSALQ"
     exon            116..255
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            256..313
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            314..368
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            369..438
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            439..559
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            560..690
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            691..856
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            857..969
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1047
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1129
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1334
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            1335..1496
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1596
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            1597..1707
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            1708..1770
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            1771..1874
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            1875..2112
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2189
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            2190..2316
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            2317..2396
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
     exon            2397..2667
                     /gene="Cog5"
                     /gene_synonym="RGD1563296"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcaacccgg tacttgccaa catggaaggt ggagacagca cagtctcggt ggcaggccgt
       61 ggggcttcgg gttccgcagc agtggcggcg accgtgcagg agctcttgca ggacgactgc
      121 tacagtgaat ttttgagtga agactttgat gtaaaaacgt acacttcaca atctattcat
      181 caagctgtaa ttgctgagca actggcaaag cttgcccaag ggatcagtca gctggataaa
      241 gagctacacc tacaggttgt tgcaagacat gaagatttac tggcacaagc aactgggatt
      301 gaatctttgg aaggtgttct tcagatgatg cagacgagaa ttggagcttt acagggtgct
      361 gttgatagga tgaaatcaaa aattgttgag ccatacaata aaatagtagc ccgtactgca
      421 cagctggcaa ggcttcaggt tgcctgtgat ttgcttcgga gaataattcg catcttatat
      481 ctcagtaaga gactccaggg acaactgcaa ggaggaagta gggagataac aaaagctgct
      541 cagagtctca atgaacttga ttatctttcg caaggaatag atctttctgg aatagaagta
      601 atagagaatg atttactctt tattgcaaga gctcgacttg aagtagaaaa tcaagctaag
      661 cgtctgctgg agcaaggtgt ggagacccag aatccaactc aggttggaac agctcttcag
      721 gttttccaca atctggggac tttgaaggat actgttacca atgttgtgga tggctattgt
      781 gctgccttgg aagacagtat caacaatgca ttggacgtca aagttttgac tcagccttcc
      841 cagtcagctg cgagaggagg tcccgggcga gccaccatgc caactccagg aaacacggca
      901 gcttttcgag cgtccctctg gaccaacatg gaaaaactta tggatcatat ctgtgctgct
      961 tgtggacaag tacaacatct acaaaaagta ttaaccaaga agagagaccc tgtttctcac
     1021 atttgtttca ttgaagaaat agttaaggat ggacagcctg aaattttata catgttttgg
     1081 aatgcagtca ctctggcact ctcctctcac tttcatgcag cgacagactc ttctatgttt
     1141 ttgaagcaag catttgaagg tgaataccct aaactattac gtctctataa tgacttatgg
     1201 aagcgtcttc agcagtacag ccagaatagc caaggagctt tcggtacacg tgggacagcc
     1261 gacctctatg ctgacctccc tgacgtggac gacgatgcac aagacatgtc cacactgaag
     1321 aggccggatt atgatccaga aaaggcgttg aaagattccc tgcaacctta tgaggctgct
     1381 tacctctcaa aatccctgtc tcgactcttc gatcccatca acttggtttt tcctcctggt
     1441 ggacgtaacc ctccttcctc tgatgagctt gatgggatca ttaaaactat agcaagtgaa
     1501 ctcaatgtag ctgctgttga tgcaaacctc acattagctg tgtcaaaaaa tgtggcgaag
     1561 accatccagt tatatgctgt gaaatcagag cagctgctct ctactcaagg agatgcaagc
     1621 caggtgattg ggcctctcac tgaaggacag aagagaaatg tgggtgtggt gaactccctg
     1681 tttaagctgc accagtcagt aacaaaggtg gttgccagtc agagctcatt ctcagcagca
     1741 gctgagcaaa ctataatgtc agccctaaag acaattcatg atcttatggg aaatgccatc
     1801 cagcccttgc tgacgtccgt ggcagatgca atcgaggcca tcatcatcac cgtgcatcag
     1861 gaagattttt ctgggtcctt aactagctca ggaaagccgg atgttccttg ttccctgtac
     1921 atgaaagagc tacaaggctt cattgccaga gttatgaatg actacttcaa gcactttgaa
     1981 tgcttggatt ttgtttttga caacactgaa gctattgccc aaagagccat tgaacttttt
     2041 atccgcaatg ccagtctcat aagacccctt ggtgaaggtg ggaaactgcg acttgctgcc
     2101 gattttgcac agatggagct ggctgtgggc ccactttgca gacgagtgtc ggatttggga
     2161 aagtcctacc ggatgctgag atcattcaga cccctgctct tccagacaag cgaacatgtg
     2221 gcagacagcc cggcagtggg agacattatc ccattcagca ttatcattca gtttctgttc
     2281 actagagcac cggcggagct gaaatccccc ttccagaggg cagaatggtc ccatgcacgc
     2341 ttctcccagt ggctggatga tcacccatct gaaaaggaca ggctcctcct tctcagggga
     2401 gccttggaag cttatgttca atcagtgaga ggcagggaag gcaaagaatt cgcaccagtt
     2461 taccccattc tggttcagct gcttcagaag gccatgtctg ctcttcagtg accgcggtct
     2521 ccgtgcacac ccgtccagag gtggcaacta gcaactaaaa atcatagttg actttctgta
     2581 attcccattg atctttcctt gttacctcta gcacttttcc tttaaaatgt caaaacagat
     2641 caatcatcac gaccttcaaa ttgcaaa
//
