LOCUS       NM_001107062            2994 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus component of oligomeric golgi complex 1 (Cog1),
            mRNA.
ACCESSION   NM_001107062 XM_001081639 XM_239373
VERSION     NM_001107062.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Loh,E. and Hong,W.
  TITLE     The binary interacting network of the conserved oligomeric Golgi
            tethering complex
  JOURNAL   J Biol Chem 279 (23), 24640-24648 (2004)
   PUBMED   15047703
REFERENCE   2  (bases 1 to 2994)
  AUTHORS   Ungar,D., Oka,T., Brittle,E.E., Vasile,E., Lupashin,V.V.,
            Chatterton,J.E., Heuser,J.E., Krieger,M. and Waters,M.G.
  TITLE     Characterization of a mammalian Golgi-localized protein complex,
            COG, that is required for normal Golgi morphology and function
  JOURNAL   J Cell Biol 157 (3), 405-415 (2002)
   PUBMED   11980916
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Oct 29, 2008 this sequence version replaced NM_001107062.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169068.1, SRR26360186.1195204.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-315               JAXUCZ010000010.1  99194842-99195156
            316-557             JAXUCZ010000010.1  99197359-99197600
            558-739             JAXUCZ010000010.1  99197976-99198157
            740-910             JAXUCZ010000010.1  99198291-99198461
            911-1067            JAXUCZ010000010.1  99200332-99200488
            1068-1278           JAXUCZ010000010.1  99201433-99201643
            1279-2067           JAXUCZ010000010.1  99202326-99203114
            2068-2214           JAXUCZ010000010.1  99203378-99203524
            2215-2376           JAXUCZ010000010.1  99203750-99203911
            2377-2504           JAXUCZ010000010.1  99204636-99204763
            2505-2613           JAXUCZ010000010.1  99205366-99205474
            2614-2723           JAXUCZ010000010.1  99206191-99206300
            2724-2802           JAXUCZ010000010.1  99206382-99206460
            2803-2994           JAXUCZ010000010.1  99207449-99207640
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..2994
                     /gene="Cog1"
                     /note="component of oligomeric golgi complex 1"
                     /db_xref="GeneID:303652"
                     /db_xref="RGD:1304594"
     CDS             1..2943
                     /gene="Cog1"
                     /codon_start=1
                     /product="conserved oligomeric Golgi complex subunit 1"
                     /protein_id="NP_001100532.2"
                     /db_xref="GeneID:303652"
                     /db_xref="RGD:1304594"
                     /translation="MAAATASSALKRLDLRDPNALFETHGAEEIRGLERQVRAEIEHK
                     KEELRQMVGERYRDLIEAADTIGQMRRCAEGLVDAVQATDQYCARLRQAGSAASRVPR
                     APQPHPPSEKFYSMAAQIKLLLEIPEKIWSCMEASQHLQATQLYLLCCHLHSLLQLDS
                     SSSRYSPILSRFPILVRQVAAASHFRSTILHESKMLLKCQAVSDQAVAEALCSIMLLE
                     ESSPRQALTDFLLARKATIQTLLNQPHHGAGIKAQICSLVELLATTLNQAHALFYTLP
                     EGVLPDPSLPCGLLFSTLETVTRQHPTGKGISALQGEMKLCSWFRHLPASVTEFQPAL
                     RTLAHPISQEYLKGTLRKWIDMCSEDIKNGIGNLLMYVKSMKGLAGIRDAIWDLLTNE
                     SASHSWEVVCQRLLEKPLLFWEDLMQQLFLDRLQTLTREGFDSISSSSKELLVSALQE
                     LEANNSTSNKHVHFEQNMSLYLWSESPNDLPSDAAWVSVANRAQFANSGLSMKAQAIS
                     PCVQNFCSALDSKLKVKLDDLLAYLPSSDTPLLKDTTHTHQAKTSAFDRYADAGTVQD
                     MLRTQSVACIKSVVGCIQAELRVIEEVTQDQKDVLHSTKLHAVLFMARLCQSLGELCP
                     HLKQCIVGKCGGSEKPAREVRALKKQGKGKAQDVLPVQAQWQEVKEVLLQQSVMAYRV
                     WSAALVKVLICGFTQSLLLSDAGSVLATATSWDELEIQEETESGSSVTSKIRLPTQPS
                     WYVQSFLFSLCQEVNRVGGHALPKITLQEMLKTCMAQVIAAYEQLTEENQIKKEGTFP
                     MTQNRALQLLYDLRYLNIVLTSKGEEVKSSRSKSDSRIEKMADRLEALIDPFDLDVFT
                     PHLNSNLNRLVQRTSVLFGLVTGTENQFASRSSTFNSQEPHNILPLASSQIRFGLLPL
                     SMTSTRKARATGRGIESQTQVGPPALSRVGDPTAHPGSLFRQLASEEDGSPAPSLFKL
                     AWLSSMTK"
     exon            1..315
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            316..557
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            558..739
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            740..910
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            911..1067
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            1068..1278
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..2067
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2214
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            2215..2376
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            2377..2504
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            2505..2613
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            2614..2723
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            2724..2802
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
     exon            2803..2994
                     /gene="Cog1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcggcgg ctaccgcctc ctccgcgctg aagcggctgg atttgcgcga tcccaacgca
       61 ctctttgaga ctcatggagc ggaggaaatc cgcgggctgg agcgccaggt tcgagccgag
      121 atcgagcaca agaaggagga gctgcggcag atggtgggcg agcggtaccg cgacctaatc
      181 gaggcggcgg acaccattgg ccagatgcgc cgctgcgcgg aggggctggt ggacgccgtg
      241 caggccaccg atcaatactg tgcccgcctc cgccaggctg gctccgcggc gtcccgggtc
      301 ccacgggccc cgcagccaca tcccccgtcc gagaagttct acagcatggc cgcccagatt
      361 aagctgctgc tggagatccc agagaagatc tggagctgca tggaagcctc tcagcacctc
      421 caggccacac agctctacct gctgtgctgc cacctgcata gcctgctgca gctggactcc
      481 tctagctcca gatacagccc catcctctcg agatttccca tactcgtccg ccaggtggca
      541 gcagccagcc acttccggtc aactattttg cacgaaagca agatgctgct caagtgccag
      601 gctgtgtcgg accaggctgt ggctgaggct ctctgctcca taatgctctt ggaggagagc
      661 tctccccggc aagccctcac agacttcctg ttggccagaa aggcaactat tcagacactc
      721 ctgaaccagc ctcatcacgg tgctggcatc aaggcccaga tatgctcttt ggtggagctg
      781 ctggctacca ctctgaacca agcacatgcc cttttctaca cgctgccaga aggtgtgcta
      841 cccgacccct ccctgccctg tggcttgctc ttctctaccc tggagacggt cacaaggcag
      901 catcccactg gaaagggcat cagtgcccta caaggggaga tgaagctgtg cagctggttc
      961 agacacctgc cagcctccgt taccgagttc cagccagcac tgcgaaccct cgcacatccc
     1021 atcagccagg agtacctgaa gggcacgctg cggaagtgga tcgacatgtg cagtgaagac
     1081 attaaaaatg ggatcggcaa tctgcttatg tacgtgaaga gcatgaaagg tctggcaggc
     1141 atcagagacg ccatatggga tttgcttacc aacgagtctg ccagccacag ctgggaggtg
     1201 gtgtgtcagc ggcttctgga gaagccgctc ttgttctggg aggacctgat gcagcagctc
     1261 ttcctggatc ggttacagac gctgaccaga gaaggctttg actccatctc cagcagctcc
     1321 aaagagctcc tagtctcagc tttgcaggaa ctggaggcca acaactccac atcgaataag
     1381 catgtccact ttgagcagaa catgtctctc tacctctggt ccgagagccc caacgacctg
     1441 ccttctgatg ctgcctgggt cagcgtagca aatcgggctc agtttgccaa cagtggcctc
     1501 tccatgaaag cccaagcaat cagcccttgt gtccagaact tctgttcggc cctggattcg
     1561 aagctgaagg ttaaactgga cgacctcctc gcctaccttc cctccagtga caccccattg
     1621 ctcaaggaca ccacccacac acaccaggca aagacctccg cgtttgatag gtatgcagac
     1681 gctgggactg tgcaggacat gctgcgcaca cagtccgtgg cctgcatcaa gtccgttgtg
     1741 ggctgcatcc aggcagagct tcgagtcatt gaagaagtca cacaagacca aaaggatgtc
     1801 cttcacagca ccaagctgca tgcagttctc ttcatggcca gactctgcca gtccctggga
     1861 gaactgtgcc ctcacctaaa gcagtgtatt gtgggaaagt gtgggggttc cgaaaagcct
     1921 gcaagggagg tgagggctct gaaaaagcag ggaaagggga aagctcaaga tgtcctcccc
     1981 gtgcaggccc agtggcagga agtgaaggaa gtcctgctcc agcagagcgt gatggcctac
     2041 cgggtctgga gcgcagcact cgtgaaagtt ctcatttgtg gattcaccca atcattgctt
     2101 ttaagtgatg ctggttcagt cctggctact gccaccagtt gggatgaact agaaattcaa
     2161 gaggagacag agtctggtag cagtgtcaca tcaaagatcc gcctccccac gcagccgtcc
     2221 tggtacgtac agtccttcct gttcagctta tgccaggaag ttaatcgggt tggaggccat
     2281 gccttgccaa agattaccct acaggagatg ctgaagacct gcatggccca agtcatcgcc
     2341 gcctatgagc agctcacaga ggaaaaccag ataaagaaag aagggacatt tccaatgacc
     2401 cagaaccgag ccctgcagct cctctatgac ctacgctacc tcaacattgt tctgaccagc
     2461 aagggggagg aggtgaagag cagccggagc aagtccgact ccagaataga gaagatggct
     2521 gacaggctgg aggccctcat tgaccctttt gacctggatg ttttcacacc gcatctcaac
     2581 agcaacctca atcgcctggt gcagcgaact tcagttctat ttgggttggt gactggtaca
     2641 gagaatcagt tcgcctcccg gagcagcacg ttcaactccc aggaacccca taacatactg
     2701 ccactggcct ccagtcagat caggtttgga ctccttccac tgagcatgac aagcacaaga
     2761 aaggccaggg caaccggtcg gggcatcgaa agccaaaccc aggttggccc cccggcactc
     2821 tccagagtag gtgacccaac ggcgcatcct ggctctctat tcagacagct tgcaagtgag
     2881 gaagacggct cacctgcacc ttcattgttc aagctcgcct ggctctctag tatgaccaag
     2941 tagcatggaa caacgcccag gctctaaata aaccctaccg cactgtttgt ccta
//
