LOCUS       XM_039106329            5365 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cordon-bleu WH2 repeat protein-like 1
            (Cobll1), transcript variant X1, mRNA.
ACCESSION   XM_039106329
VERSION     XM_039106329.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106329.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5365
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5365
                     /gene="Cobll1"
                     /note="cordon-bleu WH2 repeat protein-like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 25 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     12 samples with support for all annotated introns"
                     /db_xref="GeneID:311088"
                     /db_xref="RGD:1308954"
     CDS             295..4248
                     /gene="Cobll1"
                     /codon_start=1
                     /product="cordon-bleu protein-like 1 isoform X1"
                     /protein_id="XP_038962257.1"
                     /db_xref="GeneID:311088"
                     /db_xref="RGD:1308954"
                     /translation="MGQAVTRRLRARARAAASSAMDRSARDPVPRSAPRTPATQSAGS
                     AGRKTKAKAPLPPAEMKGMDVSSAEDPVESIPVSTEQHDNMIDKDIELSVVLPGDVLK
                     STTVHGSKPMMDLLVFLCAQYHLNPSSHTINLLSAEENLIKFKPNTPIGMLEVEKVIL
                     KPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHSPLQDLAPIICSKCEFDPLH
                     TVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISRAPSVTAFSKSSFQESCQISHNPDI
                     VKEKENKGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDA
                     PKKRRAPLPPMPTSQGAAQGQERRASCVERSTSVDDTDKSSSEGFMVRTGSLQLSGST
                     SVGTSSLKRTKRKAPAPPSKPSLTETDEGSSAAAHGLPLEDGIVPDSISEVSSPEGMS
                     SPEGPGFLSQEECSVPKPMDEISEGPGTPEAAVASMTSGVSSDYSLEEIDEKEELMEA
                     SKDQAGSVKSPTIASASTDMIITAENDPDSALSISDGETSPGSKGNTPEGRNPEGQGP
                     HHPVECLIGNENNVSDSIKDLKTLSPNQESVIQNEVVVCATSTDYVKNRPREMEATIE
                     GEAQKKVGDVEAERLSGSPAGRMDDVQSSRENHLTASPGPDQKSNQPRVEKTKMQDAA
                     IQATPACSTFDGNHEAHNSPDLRVDETAQTLGSSTSTQHSSASFQDSVNASREVRSQG
                     TSTYVQDRLPVKEAACTYGNNDALSPIDGSGKNPAASSLKNFPLYRQDNHPKPKPSNE
                     ITREYIPKIGMTTYKIVPPKSLEVVKDWDSEAAGKKDNQKTLAVAQKHAIETMTETAV
                     QAEALVTSKNSQQPQPDRTPKPSSGTEHPLHRTVSSPVGTEMNPPKPPRMTTDTGTIP
                     FAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPT
                     PKEPTIKEVQRDPQLPPEQCLSPLSERTHSAPLPNISKADDNRIQKPAETSPPPVAPK
                     PMALPAETSPPAVAPKPMAFPAETSLPPVSPKPMALPTEASSSPISPKPMAPPAEASI
                     PPVVPKPMAPPAEASPLPVAPKPMAFPAETSLPPVAPKPMALPTEASPPPVAPKPLAL
                     PGSQGASLNLKTLKTFGAPRPYNSSAPSPFALAVVKRSQSFSKASPESPSEDSSAQPP
                     AAIQDGKTQTVNQPTVGSQHDGVDKQNKPVQNEHSSQRLTPADGPSSFTLQRQSSLNF
                     QSSDPEHIRQSLLTAIRSGEAAAKLKRVTVPSNRISVNGKSGLSQPMSIDAQDSC"
ORIGIN      
        1 ctcttgggtt cgcggggctt cccaaagcta tgctctggca gtgggggctg gaacgagccg
       61 cctagacgat tcctgtccac cggtctcccc cgcggtaccc taaagccgcg tgccccgggg
      121 aggggtgcgg ggtggggtag gaaattcctc ctcgctccac gtccccgccc gctcgcccta
      181 tccgtcccct ctccggctgg ctgccctgct cgctccgatg ccgacctcgt caccttcact
      241 tctgcagggc gagttggccg aggcgactgc gagctcggga ctcccggcag ggctatgggg
      301 caggcagtga cgcgccgcct ccgagctcga gcccgcgccg cggccagcag cgcgatggac
      361 cgcagtgccc gggatcccgt accccgcagc gcgcctcgca cccccgccac gcagtctgcc
      421 ggctctgcag ggaggaaaac aaaagcgaag gcacctctcc cccctgctga gatgaagggc
      481 atggatgtct cttcggctga ggatcctgta gaatctattc ctgtctccac agagcaacat
      541 gacaatatga tagataaaga catcgaactc tcggtggtcc tgcctggaga tgttctcaaa
      601 tctactacag ttcatggcag taagcccatg atggacttgc tggtgttcct ctgtgcacag
      661 tatcacttaa acccatcaag tcacacaatc aacttgctgt ctgctgaaga gaatctcatc
      721 aaatttaagc caaacacacc aataggaatg ctggaggtag aaaaggtcat tttaaagccg
      781 aaatctctgg ataagaaaaa acctacacct ataatcccag agaaaactgt gagagtagtg
      841 atcaatttta agaagacaca gaagaccata gtgagagtta gtccccactc accgcttcaa
      901 gaccttgctc ccattatatg cagtaaatgt gagtttgatc cattgcatac agtgttgttg
      961 aaggattacc aggctcagga gcccctcgac ctcacaaagt ctcttaatga cctgggacta
     1021 agagagttat atgccatgga tatcagcaga gccccctctg ttactgcctt cagtaagtca
     1081 tctttccaag agtcctgcca aatatcacat aacccggaca ttgtgaagga gaaagaaaac
     1141 aaagggattt tcagcttttt ccaacgcagt aagaaaaagc gagagcaaac tgccagcgct
     1201 cctgcgaccc cactagtgag caagcaccgt ccttctttta cgaggtccaa caccatttcc
     1261 aaaccctaca tttccaacac gctgccctct gatgcaccca agaagaggcg tgccccgctg
     1321 ccacccatgc ccacatccca gggtgctgct caaggccagg agaggcgcgc ttcttgtgtg
     1381 gagagatcca ccagtgtgga cgacacggat aagagttcct ctgaaggatt catggtgagg
     1441 acaggatcac tgcaactcag tggcagtaca tcagtaggaa cttcatctct taagagaacg
     1501 aagcgaaaag cacctgcccc accttcgaaa ccctccctga ctgagaccga tgaagggagc
     1561 tctgcggctg ctcatggcct acctttggag gatgggattg ttccagacag catttcagaa
     1621 gtgagctctc ctgagggtat gtccagccca gagggcccgg ggttcctaag ccaggaagag
     1681 tgctctgtgc ccaagccaat ggatgaaatc tctgagggcc ctggaactcc agaggcagct
     1741 gtagcttcca tgacctctgg cgtaagctcg gattacagtc ttgaagagat agatgaaaag
     1801 gaagaactga tggaggcgtc taaagatcag gctggaagtg tgaagtcgcc taccattgct
     1861 tcagcatcta cggatatgat aattacagcg gagaatgatc ctgattcagc cctcagcatc
     1921 agtgatggag agacctctcc aggctctaag ggaaacactc cagaaggcag aaacccagag
     1981 gggcaagggc cacatcatcc tgttgagtgc cttataggca atgagaacaa tgtatctgac
     2041 agtataaaag acttgaagac actgagccca aaccaagaga gtgtaattca aaatgaagtc
     2101 gtggtctgtg ctacaagcac agattacgtg aaaaacagac caagggaaat ggaagccacc
     2161 atagaaggag aggcacagaa gaaagtcggg gatgtggaag ctgaaagatt gtcaggctct
     2221 cctgcaggta gaatggatga tgttcaaagt tcaagggaaa atcatctaac agcatcacca
     2281 ggaccagatc aaaaatcgaa tcaaccacgt gtagagaaga caaaaatgca ggatgcagca
     2341 attcaggcca cccctgcctg cagcactttt gatgggaatc acgaagccca taattcacct
     2401 gacctcaggg ttgatgagac tgcacagact ttgggtagca gcacatcaac tcagcactcc
     2461 tctgcaagct tccaggattc tgtaaatgcc tcaagagaag tcaggagtca gggcacctca
     2521 acctatgtac aagatagact ccctgtgaaa gaggcagctt gtacttatgg gaacaatgac
     2581 gctttatctc ctatagatgg aagtggtaag aatccggctg cttcttccct aaagaacttt
     2641 ccactttata ggcaagacaa ccaccccaag ccaaaacctt caaatgaaat tacgagagag
     2701 tacataccta aaattggaat gactacttac aaaatagtgc ctccgaaatc cctggaagtg
     2761 gtgaaagact gggactcaga agcagcgggg aagaaagata accaaaagac gcttgctgta
     2821 gcacagaagc atgcgattga gactatgaca gagactgccg tgcaagcaga agcccttgtc
     2881 acgtctaaaa actcacagca gcctcagcct gaccgtacac caaagcccag ctcaggaaca
     2941 gagcatcctt tgcacaggac tgtgagctca ccagttggta ccgagatgaa ccctcccaag
     3001 cctcccagga tgactacgga cactggcacc attccttttg caccgaattt ggaagatatt
     3061 aacaatattt tggagtcaaa attcagatcc cgagcttcga atccccaggc caaaccaagt
     3121 tcattctttt tgcagatgca aaagagagcc tcaggccact atgtgacatc tgcagctgct
     3181 aagagcgtcc acactgcccc tgggcctacc cctaaagaac caacaatcaa ggaggtgcaa
     3241 agggacccac agcttcctcc agagcagtgt ctttctccct tgagtgaaag gactcactct
     3301 gctcctctgc ccaatatttc aaaagctgat gataatagaa ttcagaagcc tgctgagact
     3361 tctcctcctc ctgtagctcc caagcctatg gctcttcctg ccgagacctc tcctcctgct
     3421 gtagctccca agcctatggc ttttcctgcc gagacctctc ttcctcctgt atctcccaag
     3481 cctatggctc ttcctacaga ggcatcttct tctcctatat ctcccaagcc tatggctcct
     3541 cctgctgagg cctcaattcc tcctgtagtt cccaagccta tggctcctcc tgccgaggcc
     3601 tctcctcttc ctgtagctcc taagcctatg gcttttcctg ccgagacctc tcttcctcct
     3661 gtagctccca agcctatggc tcttcctaca gaggcctctc ctcctcctgt agctcccaag
     3721 cctttggctc ttcctggtag tcagggagcc tcactaaacc tgaagacctt gaaaacattc
     3781 ggggccccga gaccatacaa cagttctgcc ccctcaccct ttgcccttgc tgtggtgaaa
     3841 aggtcacagt cgttcagcaa ggcatctcca gagtcaccca gtgaggactc ctctgcccag
     3901 cctccagctg ccatacagga tggaaagaca caaacagtaa atcagcctac agtgggctcc
     3961 caacatgatg gtgttgataa gcaaaataaa cctgttcaga atgagcacag ttctcagagg
     4021 ctgactcccg ctgatggccc gtcatcgttc acccttcaga gacagagttc tctcaacttc
     4081 cagagctctg acccggagca catccggcag agcttgctca ccgcaatccg gtctggagag
     4141 gctgctgcca agttgaagag agttactgtt ccgtcaaata gaatatctgt gaatgggaag
     4201 tcggggctca gccagcccat gtccattgat gcccaggaca gttgctgaca tcaccctgct
     4261 gtgacgcact tcaccaacca gctttctgcc tacaagaaat actgacaaat atatattcag
     4321 atgtacatta atatataaat ctgttcaaga ataaacattt gtattatgga tttaatgcca
     4381 aaagaaaaaa atgagaattt ataatttata atactttttg gcctttttgt tatagctaaa
     4441 tactgctgct ttagaaatgt taaacaaggt gtcaatgact tgtttttcca atgatgagta
     4501 atcactgctt atgttttttt tttcttacgg acacagtgtg caccatgaaa caaaggtgta
     4561 aattgagatt tatagatata ttgtatgaca cagaaacagg caagcacaga ctaacattta
     4621 ctgcctcagc attaggctat aattagaaaa agaaattata gtacggcctt tgttgctgaa
     4681 agatgtggaa gactagtaaa acaaataaat aatgttcagt tatttttact gaagagtcac
     4741 taggagactt attttatgtc tttttgaatt acaagtgagt gtcggatctg taggaaacaa
     4801 ctgagtattt ttaaatagaa cactttaacc tttagacgtc aaattgcaca agacaacttt
     4861 aagatatttt ctgtatataa ttatgatgtt gttacacaga tattacatat tttctaatgc
     4921 cagaggcctt aaaatgttcc tatgaaaatg ttgatacatt gtgacagcta tttcactttt
     4981 ggtataggga agaatagggt tagtttatgt gcacattcaa aacctcgaag ttaaacatat
     5041 gcaaaatccc aattttaatt taaaaaaaat gctaaattag tcacttatgt agctcagatg
     5101 ctagtcacct aaataataat atatattttc ctgaatgcca aaatggttga gagaaacagt
     5161 acttgctgtg ttggcttaca gtggtctaga ggtttagaac atgttagtgt cctgaacttc
     5221 cttcagaatt tcattcctct tttattcaaa aaactacaca atcagcctga cactgtttga
     5281 actcttacta aagctactgg attatctgtc atcttgacac atgtgaacct ttttccgttt
     5341 aataaaagca agttatatat ttgaa
//
