LOCUS       XM_039092053            5720 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cordon-bleu WH2 repeat protein (Cobl),
            transcript variant X1, mRNA.
ACCESSION   XM_039092053
VERSION     XM_039092053.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092053.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5720
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5720
                     /gene="Cobl"
                     /note="cordon-bleu WH2 repeat protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 22 ESTs, 4 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305497"
                     /db_xref="RGD:1312002"
     CDS             277..4350
                     /gene="Cobl"
                     /codon_start=1
                     /product="protein cordon-bleu isoform X1"
                     /protein_id="XP_038947981.1"
                     /db_xref="GeneID:305497"
                     /db_xref="RGD:1312002"
                     /translation="MDAPRALAAKPPTGRKMKARAPPPPGKPAAQNVHSEQKLPHDAT
                     LGSQQSLVHLKEALHNSTLDITVVLPSGLEKQSVVSGSRAVMDLLVELCLQNHLNPSH
                     HVLEIWSSETQQPLSFKPNTLIGSLNAHTVFLKEKVPEEKGKPGLTKAPEKSVRLVVN
                     YLRTQKAVMRVSPEVPLQNILPVICAKCEVSPDHVVLLRDNIAGEELELSKSLNELGI
                     KELYAWDNRRVLLTKTQSEPSLSCQEMLRKSSLGNDETDKEKKKFLGFFKVNKRSNSK
                     AEHLGLSGADSDEDPSKSASGGDLNGCVTTPNSPSLHSRSLTLGPSLSLGNISGMSMK
                     SDMKKRRAPPPPSPGLLGQDKVSEKASLSSQADLQKKKRRAPAPPPPQPPPPSPVVPN
                     RKEDKEENRKSTVGVGRQVPQKPPRGTARGPPQLVLPPPPPYPPPDTDVTEPVTFPGE
                     GAGSETSELRPKLSLPLGPGSHCSMGGVSQVPAEAEETASVGSCFASEDTTEDSGVMS
                     SPSDVISLDSQQDSMRSKDKWSTDQEDCSDQDLAGTPELGPQKSPSWGKHGSGSSILR
                     TEKAAMPGNDDEDLSITGLFHQTRAELDKDLGGMEENYETDTSSLTSSVNGVSNHSLQ
                     EAIIPDSGVDDIPVTFIGEVSDEPFDSGLFFSGSNNAAALNQGGIASQRSHLPPYQTE
                     QSQPFIRTNRKEPDPSLPSQDYRKRNQPILANTSENENPVGIDPRVTSFVSKPSTDDP
                     KAKDKDKMCGSGPSEKTQTGHRVNSLPVNPRVGEDENSNSALPPWSHHGQASGGSYGL
                     KYGLTTYKIVPPKPEMRCYDRDVSLSTGAIKIDELGNLMSPHMNGSRTISKPSAVAET
                     EAPPIGKVKEFWRRNSMEKYLNGPAECTVKKAPSTTITATSEKPQRDETKAGFTLTTP
                     EQQPASQEYGAPPEEDRSRPHSAVSCPVKVPAPNPTDITFLKPQRRTSSQYVASAIAK
                     KMGPPKVHADVVRPHKKTAEQGHEEAKLARPPPAWKDSAVPNLCSEAGQCEHGTNQGS
                     VRLPSNPGGQLPADHPKVEVNSTYGKSATHNSPAAVHRNSYFLPGRSSQRDRVSVGQS
                     CGFHEKQTISNQKMNSTSNPSQALDKAHPAPLLLTEARDSGRILVNGSAQTPGNCEPP
                     HSQKESTLTSYIILQTEEKPSPLSADGQNSDDALPSSIFGPKKKFKPVVQRPLPKDIS
                     LHSALMEAIHTSGGRDKLRKTAEQASEGRPKKPSYVEAESERSALLAAIRGHSGTLSL
                     RKVSSLASEELQSFRDAALMAPGVDKPQQEDRGLPPPPALPPPSTPASQVPSASIPVS
                     RFSIGTLSNPVNARQALMDAIRSGTGAARLRKVPLLV"
ORIGIN      
        1 gcggggcggc gccgcggtgg gcgcggctga accagcttgg cgggggcgcg gcgcaccttg
       61 ctcccgcgcc cgggctagcc gcgtcggtcc ctccccgcgc gcccccgccc gcccggacgc
      121 ctccggtcgc ttctgtcctt ttcggcacgg ctgctgtcct cgctagcccc gcgtgggagg
      181 aggatgggtc agcgcggaaa aagtgaatga ggacggcggc gccgcagcca gcgccccagt
      241 cggccggcag agcctggtgc gcagcccgcc ggctccatgg acgcaccgcg cgcactggcg
      301 gccaagcccc ccacaggaag gaagatgaag gcccgcgctc caccacctcc tggaaagcct
      361 gctgcccaga atgtccacag cgaacagaaa ctgcctcatg acgccacact gggttcacag
      421 caaagcctgg tccacttgaa ggaggcactt cacaacagta ccttggacat cactgtggtt
      481 ctgcccagtg gactggagaa gcagagcgtg gttagtggga gccgtgcggt gatggacctc
      541 ctggttgaac tctgccttca gaaccacctg aatccttctc accacgtctt agagatctgg
      601 tcttcggaga cccaacagcc tttgagtttt aagccaaata cgttgattgg ctccttgaat
      661 gcacatacgg tatttctgaa agaaaaagtc cctgaagaga aagggaagcc tggcctaacc
      721 aaggcccctg agaaatccgt acgcctggta gtgaactacc tgagaactca gaaggctgtc
      781 atgcgggtga gccctgaggt gcctctgcag aacattctgc ctgtcatctg tgcgaagtgt
      841 gaggtcagcc cagatcacgt ggtgctgctc agggacaata ttgctgggga agagctggag
      901 ctgtccaagt ccctgaatga actagggatc aaggagctat atgcgtggga caacagaaga
      961 gttcttctga ccaaaacaca gtctgagcct tccctgagct gtcaagaaat gctcaggaaa
     1021 tcatcccttg gcaatgatga gacagataag gagaagaaaa aatttcttgg gtttttcaaa
     1081 gttaataaga ggagcaacag taaggctgag catcttgggc tgtcgggcgc agatagcgac
     1141 gaggatccct cgaagtcagc gtctggaggg gacttgaacg gctgtgtaac aacacccaac
     1201 tcaccatcct tgcattctcg gtccctgaca ctgggtccct ccctctcact gggcaacatc
     1261 tctggaatgt ctatgaagtc agacatgaag aagcgcagag cccctcctcc tccaagtccc
     1321 gggctgctgg gtcaagacaa ggtatcagaa aaggcctccc tcagctcgca ggccgatctt
     1381 cagaagaaga agaggcgggc gccagctcct cctccaccac agccgccacc accaagtcct
     1441 gtggttccca accgcaagga agataaggaa gagaacagga agagcacagt gggtgttgga
     1501 cgtcaggtgc cacaaaagcc tcccagaggc acagctcggg gcccacccca gttagtgctc
     1561 cccccgcccc caccctatcc tcctcctgac acagatgtaa cagagcctgt cacctttcct
     1621 ggggaaggcg ctggttccga gacctcagag ctgagaccta aactgagtct gcctctgggg
     1681 cctggcagcc actgcagcat gggtggagtc tcacaggtgc ccgcggaggc tgaggagacg
     1741 gcatctgtgg gcagctgttt tgcatcggag gacacaaccg aagactcagg ggtcatgagc
     1801 tctccctcag atgtcatctc cctggactca caacaagata gcatgagatc taaggataaa
     1861 tggtccacag accaggagga ctgcagtgac caggacctgg ctggaacacc agaactgggt
     1921 ccccaaaaga gcccatcatg ggggaaacat ggctcaggaa gctcaatttt aaggactgag
     1981 aaagccgcca tgcctgggaa tgatgatgaa gatctgtcca tcacgggact cttccatcag
     2041 actcgagcag agcttgacaa agacctggga gggatggaag aaaattatga aacagatacc
     2101 agctctctaa ccagctctgt aaatggggta tccaaccaca gtctgcaaga agccataatc
     2161 cctgatagtg gtgtggacga catccctgtc acttttatcg gggaagtttc tgacgagcct
     2221 ttcgactcgg ggctgttctt cagtggaagt aacaatgctg ctgctttgaa ccaagggggc
     2281 attgccagcc aaagatccca cctgccccca tatcagactg agcagagcca gccattcata
     2341 aggacaaaca gaaaagagcc tgacccctcc cttccttccc aagattacag aaagagaaat
     2401 cagccaatct tagccaacac atctgaaaat gagaatccag ttggaataga ccccagagtt
     2461 acatcatttg tttcaaagcc ttcgacagat gacccaaagg caaaggataa agacaagatg
     2521 tgcggttctg gtcccagtga gaagacacag accggtcaca gagtaaactc cctgccagtg
     2581 aatcccagag ttggtgagga tgaaaactcc aactcagccc tgcccccatg gtctcaccat
     2641 ggccaggcct cggggggaag ctatggactc aagtatggcc tcactacata taaaatcgtt
     2701 cctcccaaac cagagatgag gtgttatgac agggatgtgt ccctctccac tggtgccatt
     2761 aagattgatg aactagggaa tctgatgagt cctcacatga atggaagcag gaccatatcc
     2821 aagccatcag ctgttgccga aacagaggct ccacctattg gaaaagtcaa agagttctgg
     2881 aggcgcaact cgatggaaaa gtacctgaat gggccagccg agtgcacggt caaaaaggcc
     2941 ccctccacca ccatcactgc cacatccgaa aaaccacagc gagatgagac gaaggcaggc
     3001 tttacgctga ccactccgga gcagcagcct gcctcacagg aatacggggc acccccggag
     3061 gaagacagaa gccggccaca ttcagccgtc tcctgtcctg tgaaagtgcc agcacctaat
     3121 cccacagaca tcacattcct caagcctcag agaagaacat ccagccagta tgtggcttct
     3181 gctattgcca agaagatggg acctccaaaa gtccatgctg atgtggtgag accacataag
     3241 aagactgccg aacaaggcca cgaggaagca aagctcgcta gaccacctcc agcctggaaa
     3301 gacagtgcag tccccaacct gtgttcagag gccggccagt gtgagcatgg cacaaaccag
     3361 ggctctgtcc gccttcccag caaccctggt gggcagttgc cagcggacca tcccaaagta
     3421 gaggtcaaca gcacatatgg gaagtcagcg actcacaact ctcctgctgc tgtccacaga
     3481 aactcctatt tcctcccagg cagatcttcc cagcgggatc gtgtttctgt aggacagagc
     3541 tgtggtttcc atgaaaagca aactataagt aaccaaaaga tgaattcaac atctaacccc
     3601 tcgcaggcac tggacaaggc acacccagcc cccctgctct tgacagaagc ccgtgactct
     3661 gggaggatac tggtgaatgg ctctgcacag accccaggaa attgtgagcc tccccactct
     3721 cagaaagagt ccaccctgac tagctatatt atcttacaga cagaggaaaa gcccagtccg
     3781 ttatctgcag atggtcaaaa ctcagatgat gctctaccgt cgagcatttt tgggccaaag
     3841 aaaaaattca agcctgtcgt tcaaaggcca cttccaaaag atatatccct gcacagtgcc
     3901 ctgatggaag ccatccacac ctcaggaggg agggacaagc tccgaaagac tgcagaacag
     3961 gcctcagaag gaaggccaaa gaaaccatcc tacgtggagg cggagagcga gcgatctgcc
     4021 cttctggcag ccatccgggg ccacagtggg actctcagcc tgaggaaggt gtcatccctg
     4081 gcctctgagg agctccagag cttccgagat gctgcactca tggctccagg tgtggacaag
     4141 cctcagcaag aagaccgtgg ccttccaccc ccacctgccc tgccaccacc atccactcca
     4201 gcatcccagg ttccctcagc ctccataccg gtttctaggt tcagcatcgg caccctcagc
     4261 aacccagtaa atgctaggca agccttgatg gatgctatcc gctcgggcac aggagctgca
     4321 agactcagaa aggttccctt gctcgtgtga ggttcaacca ctgcagaaac cacctgtaca
     4381 gctccaagga tcatccctaa agaaatccac atgacaggaa atgaaaccat caagaagtgg
     4441 cggtactttc ctgtctccag gccaacttgc ccgcggtgga ttttcagtgt tcctacataa
     4501 tggtcaaagg ggagatgctg ctttgctgtg tgacttgtgt gccaaggaca tatgatctgc
     4561 ctctgaatgc tcacagttgc caataaactg ctcttgttgg cagagtaatg ggaatacaca
     4621 ggctggagcc caacactcac acatgattat agctatgggc acaaggaatt atgccttaag
     4681 ttgatttttg gatctttgag actttgacca catacacatg gttaaaatca tttatgatct
     4741 tttgaattct aggtggacaa aaacataaat caacagaaat agtcagaatc tatcacatgc
     4801 tccaagacac tctgttcctg gagtaagaag cacaatggag aaagcctgct gagatggctt
     4861 ttgcaggaca gcaaaagctt cagattcatg tttgtattcc tcacacagtg aggcctcaca
     4921 cctcacagat gatcttggac tgtgatctga ccaactaagc ttttaaaatt ccactactgc
     4981 tgcccagagt agcagcccta cttgaccgtg ttagcaagac attcctggct ccttagaagg
     5041 tgatgggaag cagagatcag aacactggaa gggctgccct tttttgtata gattgtgtcc
     5101 cccttgtata tcttccccct atgtcccagc aggctatgac atgcatcggt tcactgtgaa
     5161 gggatcttgc atggagccca ggacttcacc agtagccttc tgaaatcctg cagagggcca
     5221 gagagcaggg tgttgaggac ctacatgtca cagcggtcca cattgtgctg tgtgttctgt
     5281 ggcttacatt tccctgacac actttggcat ggtccagcag ctgccctggt attatatgac
     5341 attcttatag tacattgtgg gtagacacca tctttaaaga atttaaactc agcaggaagt
     5401 tttgtgtttt ttttttactg tgtctctaaa accttttctt atatggagaa aatcaagaaa
     5461 gcaatagaag tcaaaatgag ttcatgatat aaaatctctg ccttactgaa aagaaaaaaa
     5521 gcaaaaaaga aaccatgaaa tcctttaact gtttcgctct gttttaaatc taggcatcgg
     5581 gtagagtggg agcttggtac cgtgtgatta acattgctaa agtttctcag tgaggcaaga
     5641 gctaccagcc aattactctt agtcacagct gtctactctt tctcttagtg ccacaaataa
     5701 atgcaaatcc aatgctgtaa
//
