LOCUS       NM_001195488            3870 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus cytochrome C oxidase assembly factor 5 (Coa5),
            mRNA.
ACCESSION   NM_001195488 XM_001057297 XM_578786
VERSION     NM_001195488.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3870)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000213.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001195488.3.
            
            On Feb 10, 2021 this sequence version replaced NM_001195488.1.
            
            Sequence Note: This RefSeq record was created from genomic sequence
            data to make the sequence consistent with the reference genome
            assembly. The genomic coordinates used for the transcript record
            were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR8487231.183316.1, BQ204536.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132294, SAMD00132303
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-188               JACYVU010000213.1  29015220-29015407   c
            189-272             JACYVU010000213.1  29013727-29013810   c
            273-3870            JACYVU010000213.1  29001996-29005593   c
FEATURES             Location/Qualifiers
     source          1..3870
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q21"
     gene            1..3870
                     /gene="Coa5"
                     /gene_synonym="RGD1565095"
                     /note="cytochrome C oxidase assembly factor 5"
                     /db_xref="GeneID:503252"
                     /db_xref="RGD:1565095"
     exon            1..188
                     /gene="Coa5"
                     /gene_synonym="RGD1565095"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..314
                     /gene="Coa5"
                     /gene_synonym="RGD1565095"
                     /codon_start=1
                     /product="uncharacterized protein LOC503252"
                     /protein_id="NP_001182417.1"
                     /db_xref="GeneID:503252"
                     /db_xref="RGD:1565095"
                     /translation="MPRYYEDKPEGGACAGVKEDLGACLLQSACVLQEGKSPRQCLKE
                     GNCRALQYSFFECKRSMLDARSRFRGRKGY"
     exon            189..272
                     /gene="Coa5"
                     /gene_synonym="RGD1565095"
                     /inference="alignment:Splign:2.1.0"
     exon            273..3870
                     /gene="Coa5"
                     /gene_synonym="RGD1565095"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttgtcagtg ggcgtagccc acgccctttc gggcggtcca gggtgaccga aggccgtgat
       61 ctggtgtggt gagggcggtg ggccccgcca tgccccggta ttatgaggac aagccggagg
      121 gcggcgcgtg tgcgggcgtg aaggaggatc tgggtgcatg tctgctgcag tcggcctgtg
      181 tgctccagga aggaaagtcc ccacggcagt gcttgaagga aggcaactgt agagctttgc
      241 agtactcgtt ttttgagtgt aagagatcaa tgttggatgc cagatcaaga ttcagaggaa
      301 gaaaaggata ttgataatgt catgttggac gaagatgaaa accactcaga attttctctg
      361 gtccttaaca gaaaagaatc aaagtaggaa gcacagtagc tgccacatct gttcaacctc
      421 tgggcctccc aagtacacca gagaaaacag atcaatgctg tttctgaatg attctgctgg
      481 ttaaagtcat ttatagaaga ttcacgatac tgaacaacta tgggttaaga acttactgtg
      541 ttttgtgaat tgcccaatgg agagagtgtg ttcaaggatg actcttgatc agattacaca
      601 gtatgtgcat ccaggaggcc acatgaaatc agcatagtta gtaacataga atctgttgtc
      661 agcctcctcc aactcgtgtc tgtttcttgg tttcaatttt aggccagccc tctcctcata
      721 aaggggtgat agtagccaca gtccacagcc tcaaggtctg gtctccaaaa agaagagtgt
      781 gagctgggcc acaatcatac cctcctgaag aactctggtc ttttctggtc atatgctcct
      841 gccccaccct tggtgatcct ggctagatca tggtcttccc gtactgtgcc gacaccattc
      901 acagtaacat aggatgagtt atgggcctca tccctaaaca ctggaacttg cagcaaatga
      961 tgtagcagat attcactcta gataacaaat gtcagtgaca tgaagtggct aggaaagttt
     1021 agaaccctga tcattttatt tttaccactt aacacagtag agagccatca ggactaaatc
     1081 tttggtgtga ttcttgccat tgaagtcatt atagcttcca tattgttccg tagttcactg
     1141 gaaagtgcac ttgctgttaa aagttttgaa gctgtgagga ttccctaggg tgtcactgaa
     1201 gtctgctctg tatactgccc ccactgggag tgcacggtac tgcaccctta aatcctgccg
     1261 cctgtgtccc aaacatggtg tctgcgtgca gtgtggagta gtgcgccttc tttttttttt
     1321 tttttttttt tttttcctat tctttttttg gagctgggaa ccgaacccag ggccttgtgc
     1381 ttgctaggca agtgctctac cactgagcca aatccccaac ccctgtagtg cgccttctat
     1441 actagaaagc ttgaccactg agccacacct cccactagtg cttcaatgtc aaccgagagt
     1501 aaaatgtgtt tgtatgaaat gcctccattt gactagatag agctttattt ggagaaagtc
     1561 acatataaca taattgaact ttgaattata caatcccgtg gattttagag tgctcctgga
     1621 gcaggtggca gtcaccacta tctacttcca gaacagtctc atcctttcca gaaacccaca
     1681 ctctgtcttt cctctattcc agatctgtta gacgagtgga attacatagt ccggtctttt
     1741 ctgagttctg ttactaagtt ttaaaggttt attctcaggt agcatcagtc cgtaatgtat
     1801 tactgctgaa tagtgttccg tgtatacaga caccgtgtgt gtcttcttcc agcgagcaga
     1861 ggaactctga gctgtttcta ctttggggct tttgactaat gctatgaaca tctgtgaaaa
     1921 agttcgaaat gtttgattta gtacagaccc tagtggggag ctccggggtc atattatgac
     1981 agcctcaatt gtacttccta cagtggtttt accaccattt cctgctctcg tgggatctag
     2041 gctccagcat ccctcacaac tttctgcctg agatgaagag gcatctgatt gggatcttgg
     2101 tttgcatttc cctaatgtct aataatctga gctttttttc atgtgttcat tggctttcta
     2161 tgctgctttg cagaatgttt atttcaggct acagtctgcc tttcagctgg gttatctttc
     2221 tgtttttctg taggattttt tatttacggt caactcatct cttaaagatt aattggcatt
     2281 ttttttttct caacttgtgg tttgcccttc tcaatgtctt gatgctctct gaagcacagt
     2341 ttttattttt atatattgcc tttctgcgtc ttagcccagg ctggccagga atccccaaag
     2401 ccttgtacac agagtgagca ttttcaccgc ctcacttccc agaaggcaca cggcgctgct
     2461 cctgcctaga gcagttttca tattggaaaa taacaatgtg ttttttcttt cagtgtatcc
     2521 taagaaacca ttcctaacct ggacttacag aagcttatgt cttcactaaa gaatttttaa
     2581 attttacctc ttacctgtag gcctgtgctc tcaaaatgtt acacaccttt attcatggcc
     2641 atatttaaaa ttaagtagaa atagtgagta tgtagatatg cctgtatcgt gatgagcaca
     2701 ttcacagtgc agtgcagttg gcctgcagcc cagttctgca tccacctcag aaaatgccca
     2761 gtgagcccat ctaatgactc ccagcccctg ccaggtcctc cctccctgcc ctgtcttggc
     2821 atactctctc tccatggcaa tcaccattct ctgtcctgtt tctgaatttg agtaccctaa
     2881 gtgcctggta tacatagatt ctcagtgcgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     2941 gtgcgtgcgt gttcatgtag cagaatgccg tgaaggcttg tatcatgtat gagtttcctt
     3001 tgtaaggaca aatagtactt tagactttag tgtgtgttgt atgtatgctg tatgtttctt
     3061 gttacctact catccagccg tgggtacctc agttgttccc accctggagc tcctgactat
     3121 gctgtgaaca tgtatataca aatatccctc ggatcctgct tagcatacac gcagcagatt
     3181 gtatgtctta gggtaactct gctgttatta gtaggcactg ccgtagtctc catagtgacc
     3241 acactattgt atgtcctggc agcagtgcac agagattaga agtgcccatg tccttgtgag
     3301 tcttactctt ttttagtggc tgttctagta ggtgttaaga tctgctagtg cttctgcttc
     3361 ccatctctct gactactgat gtcacatgtt ttatatgctt ggtggccttc tttatatatc
     3421 gtttgaagaa atctctttag gtccactgcc cattaatagt tgggtcgttg gctctggttg
     3481 aatttttggt agtcacatcc acaaaagcat taacccaccc aagggagcct actacagctt
     3541 gccctaggaa acttgatttt agctcttagc tttgctctct ggtatatttt gagttcattt
     3601 gtgtgtgaga tgtaaggtct gactttctac tctacccatg tggatacctg gctttgcatg
     3661 ttgcccttgg tgggaaaaca tcccgctgtg catggtgggg ctgtttctga gcctggtctc
     3721 ttccatgacc tctgtctgcc ttcatgccaa cgccactgct ttgattactg gagaattata
     3781 atagaaattt gaaatcagaa aatgtttgtt ctgtaataaa aatttgaaat cagaaagtgt
     3841 tctataataa aaatttgaaa tcagaaagta
//
