LOCUS       XM_006234052            7592 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus centriolin (Cntrl), transcript variant
            X1, mRNA.
ACCESSION   XM_006234052
VERSION     XM_006234052.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 11, 2024 this sequence was replaced by
            NM_001427179.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006234052.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7592
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7592
                     /gene="Cntrl"
                     /note="centriolin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 23 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 100 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311886"
                     /db_xref="RGD:1305317"
     CDS             169..7179
                     /gene="Cntrl"
                     /codon_start=1
                     /product="centriolin isoform X1"
                     /protein_id="XP_006234114.1"
                     /db_xref="GeneID:311886"
                     /db_xref="RGD:1305317"
                     /translation="MKKGSERKLSKAKMPVSSHFPGPSSLRSSMRSRSLSPLIGSETP
                     PFHPGGQCPAQAELTDENTMPLESQQHKGADPYVGVRYITEALIKKLTKQDNLALVKS
                     LNLSLSKDGGKKFRYIENLEKCVKLEVLNLSYNLIAKIEKVDKLLRLRELNLSYNKIS
                     KIEGLENMCNLQKLNLAGNEIEHIPGWFSKKLKSLRVLNLKGNKISSLQDVSKLKPLQ
                     DLTSLTLIDNPVVALPHYLQFIIFHLRSLESLEGQPVTTQDRQEAFERFSLEEIERLE
                     KDLEKKTVETEELKNKQTKFLEEIKHQDKLNKSLKEEAMLQKQSCEELESDLNTKKEL
                     LKQKTVELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAEMDKSPDESPYIGKSR
                     YKRNMFATETYIVSDAQAVQVRKMVPDGGQLRHEHAPRAQAPPDVQLEDTGKQIVAAQ
                     TRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKL
                     RQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRGKEQQLDI
                     MNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEY
                     LGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELEN
                     ALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVL
                     QTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNH
                     VVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQW
                     EKEEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEARIKFDKRQHNARIQQLEN
                     EIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARSQEQFLGL
                     DTELKSLKKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQERAEELQEAERSSREAM
                     QAAKDLSRAEAEIELLQHLLREREGQFRDEMENAHVGSKGANLQLLEIEALKEAMAKQ
                     RAEITRLRDVLNLTGTGKKGGIENVVEEIAELRHAVSAQNEYISSMADPVQRQGCWYF
                     MPPPPSSKVSSHSSQATKDSGLGLKCTASTPLRSQQAGQQEEKGSSGPLPASGYWVYS
                     PIRSTPHKSFSKREDADNGGDSQEESGLDDQEDPPFVPPPGYIMYTVLPDGSPVPQGV
                     ALYAPSPPLPHSSHPLTPGTVVYGPPPAGAPIIYGPPPANFAVPLISMGVQHCNIPEH
                     RDLENEVSRLEDITHHLKSKHQEERWLKTSRQHPEKEVEELHRNIDDLVQEKKELELE
                     VEELHRTVERHQQRRDFIDGNVENLMTELEIEKSLKHHEDIVDEIECLEKTLLKRRSE
                     LREADRLLAEAESELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLV
                     KAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSL
                     QRDIKAAEVNEDHHLQVLKESESLLQAKRAELETLKSQVTSQQQELAVLDSQLGHRRE
                     ELLLLQDSLTQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISER
                     RTQLTLIKQEIEKEEENLEVVLQQLSKHKTELKNVADILQLETNELQSLKLQHDQKVV
                     ELEKTQVDLLEGKLELESLQQTAQQQRRELERQRQLLERDRRETERVRAETQALQSCI
                     ECLNKEKEHLQEQCESWEKKSSHAKRVLAATEESNNTEQSKLGQLEVSVRKLQQELEL
                     LSQDKLALHSDSAQEQQQLQDKREALNSLQKELENTQDHLNLAKQDLMHTTKCQSALL
                     SEQAQLQKDVSQWTARLESCQKETETKEQQLQELQDEIRESKLQLDQQEMVFQKLQKE
                     RESEEQKLVASIVSLEQQQGQLERELMDQKSKLEWLLTDVSAAEGRLRTLQKEERCTE
                     SLEKMLSQAKQQLSEREQQLMEKSGDLLALQKEADGMRADFSLLRNQFLTERKKAEKQ
                     VAGLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELRQMQ
                     QEYLELKKQVANQKDFERRQMEVSNAMRTLKSEVKDEIRTSLRNLNQFLPDLPADLTA
                     ILERDDNLRELESVKENFPFTTNERIFEEKSNFPQVHIMDEHRRGEALRERLRHREDH
                     LKAQLRDSMSKQAEVLIKGKRQTEGTLHSLRRQVDALGELVTSTSVDSAPSPSLSHLE
                     SSLVEDSQHGHSQSSFQVLQVPSEPNIYRH"
ORIGIN      
        1 cccacaccaa gcgggacctc tcggcaaccg gcacaacaca acaaaatggc tgcgatgccg
       61 ccggtcgcct gaggggaggt atcccagcgt ctccgcatcg cctctccccc ttggctgttc
      121 cttccggtgc tgaggcggtt ttgatggcca cctggtttta ttcttgcaat gaagaaaggt
      181 tctgaacgaa agctctccaa agcaaagatg ccagtgtcat ctcattttcc tgggccatcg
      241 tctcttaggt ccagcatgcg atctaggtca ctgtcccctt taattggatc tgagactcca
      301 ccttttcatc ctggtggaca gtgccctgca caggctgagc ttacagatga aaacaccatg
      361 cctttggagt cccagcaaca taaaggagct gatccatacg taggagtccg gtatattaca
      421 gaggccctca tcaaaaaact cactaaacag gacaatttgg ccttggtgaa gtctctgaat
      481 ctttcacttt ctaaagatgg tggcaagaaa tttaggtaca tcgaaaatct ggaaaagtgt
      541 gttaaacttg aagttctaaa tctcagctat aatctaatag cgaagataga gaaagtggac
      601 aagctgttac gattacgtga actcaactta tcgtataaca aaatcagtaa gattgaagga
      661 ctagaaaaca tgtgtaacct gcaaaagcta aacctagcag gtaatgaaat cgagcacatt
      721 cctgggtggt tctcaaagaa actgaagtct ttgcgagtcc tcaatctgaa aggcaataag
      781 atatcatcgc tccaggatgt aagcaagttg aagccacttc aagatctgac ttctctaacc
      841 ctcattgaca atccagttgt ggcccttcct cattacctcc agttcatcat tttccacctc
      901 cgttccctgg aaagtttgga gggtcagcca gtaaccactc aggatagaca agaggctttc
      961 gagagattca gtttagagga gatagaaagg ctggaaaaag acctggaaaa gaagacagtg
     1021 gaaacagaag agcttaagaa caaacaaaca aagtttcttg aggaaataaa acatcaggat
     1081 aaactaaaca agtcattgaa agaagaagcc atgttacaaa aacagagctg tgaggagcta
     1141 gaaagtgacc tcaacacaaa aaaggagctg ctaaaacaga aaacagtgga actgacgcgg
     1201 gcatgtcaga agcagtatga gctggagcag gaactggcct tttacaaaat tgatgccaag
     1261 tttgagccac taaattatta tccgtcagag tatgctgaaa tggacaaatc cccagatgaa
     1321 agcccttaca ttggcaaatc cagatacaag agaaatatgt ttgccaccga gacttacatt
     1381 gtcagcgacg cccaggcagt tcaggtcagg aagatggtgc cagacggagg acagctcaga
     1441 catgagcacg caccgagagc ccaagcacca cctgatgtgc agttggaaga cacaggaaaa
     1501 caaatagttg cagcacaaac tcgactgtca gaactacacc atgaaataga agcagcagaa
     1561 cagaaagtat tacgggctac tcaagaattt aaacaactgg aagaagctat acgacaaaaa
     1621 aagatttcag aagcagagaa agaccttctt ctcaagcagt tgagtggtag actacgacac
     1681 ctaaacaagt tacgccagga agctctggat ctagaagctc agttggaaaa gcaaagaaaa
     1741 gaaattgctg aaaagcatga ggagatcaac agtgcgcagc tggccacaga cctcctggac
     1801 tccaaagacc caaagcagtc ccatatgaaa gcccagaaga ggggtaaaga gcagcagctc
     1861 gacattatga acaagcagta cacacaactg gaaagccgcc tggacgagat actttgtagg
     1921 attgctacag agactgaaga gatcaaggac cttgaacagc agcttactga cggccagata
     1981 gcagcaaatg aagctctgaa gaaggatttg gaaggcgtca tcagtgggtt gcaagagtac
     2041 ctggggacca tcaaaggcca ggcagctcag gcccaaaatg agtgcaggaa gctgcaggat
     2101 gagaaagaga cactgctgca gagactgaca gaagtcaagc aggagaagga cgaactggaa
     2161 atagttgcca tggatgcaga gaatatgagg aaggagctcg cagagctgga aaatgccctc
     2221 caggagcagc atgaggtgaa cgcatccctg cagcaagccc agggagatct cagcgcctat
     2281 gaaactgagc tagagactca gctgaaacta aaggatgctg aaaccagcca gctcaagcag
     2341 gagttagaaa acctcgtaag gcgcactcag ctagaacaat cggtgcttca aacagagctg
     2401 gagaaggaaa gacagtccct cagggatgcc ctgggcaaag cccagtcctc agaagagaag
     2461 caacaggaga acagtgagct ccgtgcacag cttaagcagc ttcaggacga caacagccta
     2521 ctaaagaagc agctgaaaga ctttcagagt caccttaacc atgtggttga tggtctgatt
     2581 catccagagg aagtagcagc tcgtgtggat gagctaagga aaaggttgaa gctaggagct
     2641 ggggagatga gaatccatag tccttcagat gtcttaggga aaagtcttgc tgatctacag
     2701 aaacagttca gtgaaatcct tgcacgatcc cagtgggaaa aagaggaagc ccaggttaga
     2761 gagaggaaac tccatgaaga aatggctctc cagcaagaga aactggcaaa tggtcaagag
     2821 gagttcaagc aggcctgtga aagagcactt gaagccagaa ttaagtttga taaaagacaa
     2881 cataatgcaa gaatccagca attagaaaac gaaattcact atttgcaaga gaacctaaaa
     2941 agtatggaaa aaatccaagg ccttacagac ctccagcttc aggaagcaga tgaagagaag
     3001 gaaagaattc tggcccaact ccaggagtta gagaaaaaga agaggcggga agatgccagg
     3061 tctcaggagc agttccttgg tttagataca gagctgaaaa gtctgaagaa ggctgtggct
     3121 gcttctgata aactagctgc agccgagctc accattgcca aagagcagct caagtccctg
     3181 cacggaactg tcatgaggat taatcaggag cgagcagagg agctgcagga ggcagagcgg
     3241 tccagcagag aggccatgca agcagccaag gacctgagca gagccgaggc agagatcgag
     3301 ctcctacagc accttctcag ggagagagag ggccagttcc gagatgagat ggagaatgca
     3361 cacgtaggct ctaaaggagc aaacttacag ctattagaga ttgaggcgct gaaggaggcc
     3421 atggcgaagc aaagggctga gatcacaaga ctccgggatg tattaaacct cacagggaca
     3481 ggtaaaaaag gaggcattga gaatgttgta gaggaaatcg ctgagctccg gcacgcagtt
     3541 tctgctcaga atgagtacat cagcagcatg gcagatcctg tccaaagaca aggctgttgg
     3601 tatttcatgc caccaccacc atcgtcaaaa gtttccagcc atagttctca ggctaccaag
     3661 gactccggtt tgggtctaaa gtgtacagcc tctactcctc ttagatcaca acaggctgga
     3721 cagcaagaag agaagggcag cagtggacct ctgcctgctt cgggatactg ggtctactca
     3781 cccatcagaa gcacaccgca taagtcattt tcaaagagag aagatgcaga caatggagga
     3841 gatagccagg aagaaagtgg actggatgac caggaggacc ccccatttgt gcctccccct
     3901 gggtacataa tgtatactgt gcttcctgat ggttctcctg tgccccaggg agtggccctg
     3961 tatgcgccat cgcctccctt gccccacagc agtcatcctc tgacccctgg cactgtggtt
     4021 tatggcccac ctcctgctgg ggcccccatc atatatggac ctcctcctgc caactttgct
     4081 gttcccctca tctccatggg tgtgcagcat tgcaacatcc cagagcaccg tgacctggag
     4141 aatgaggtgt ctagactaga agacataaca caccacttaa aatcaaaaca ccaggaagag
     4201 cggtggctga aaacatccag gcagcatcct gagaaagagg tggaagagct acaccgcaac
     4261 atcgatgacc ttgtgcaaga gaagaaggag ttagagctcg aggtagagga attacacaga
     4321 accgttgaga ggcatcaaca acggagggac ttcattgatg gaaacgttga gaatctaatg
     4381 actgaactag aaatagaaaa gtctctcaaa catcacgagg atattgtaga tgaaattgag
     4441 tgcctagaga aaactctcct gaaacgtcgc tcggagctca gggaagctga ccgactcctg
     4501 gcagaagcgg agagtgagct cgcatgcacc aaggagaaga caaagagtgc tgtcgaaaag
     4561 ttcactgatg ccaagagaaa tttattacaa actgagtcag acgctgaggc attagaaaag
     4621 agagcccagg agactgcact taaccttgtg aaagcagagc agcaactaag attgctccag
     4681 gctgatgcag aagacttgga gcaacacaaa atcaaacaag aagaaatctt gaaagaaata
     4741 aacaaagttg tagcagccaa agatgctgat ttccagtgtc taaacgagaa gaaggaaaaa
     4801 ctgacagaag agcttcaaag tctgcagaga gacatcaagg cagcggaagt caatgaggat
     4861 caccaccttc aggttcttaa ggaatctgag agtctccttc aggccaagag agctgagctg
     4921 gaaacactga aaagccaggt gacaagccag cagcaggagt tggctgtcct agactcacag
     4981 ctggggcaca gaagggaaga gctgcttcta ctccaggaca gcctcaccca ggcaaaagct
     5041 gacctccagg aagccctgac actgggggag acggaagttg ccgagaagtg cagtcacatc
     5101 agggaagtaa aatcacttct ggaagaacta agttttcaga aaggagaact gaatgtccac
     5161 atcagtgaga ggaggactca gctcacactt ataaagcagg agatagagaa ggaggaagag
     5221 aatcttgagg tagttttaca gcagctgtcg aaacataaga ctgaactaaa gaatgttgca
     5281 gacatactgc agcttgaaac caacgagcta caaagtctga agctacagca tgaccagaag
     5341 gtggtggagc tggagaagac tcaggtcgac ctgctggagg ggaagctaga gctagagagt
     5401 ttgcagcaga cagctcagca gcagagacgg gagctagagc ggcagagaca actcctggag
     5461 agagacaggc gggagacaga gcgagtgagg gctgagaccc aggcactaca gtcctgcatc
     5521 gaatgtctga ataaagaaaa ggaacatctc caagagcagt gcgagagttg ggaaaagaag
     5581 tcttcccacg ccaaaagagt tttagcagct accgaggaaa gcaacaacac ggagcagtcc
     5641 aagctggggc agctggaagt gagcgtcagg aagctgcagc aggagctgga gctcctgagc
     5701 caagacaagc tcgccctaca cagtgatagc gcccaggagc aacagcagct gcaagataaa
     5761 cgggaagcct taaactccct gcagaaggaa ctggaaaata cccaagacca tttgaaccta
     5821 gcaaagcagg acctgatgca caccaccaag tgccagagtg ctctgctcag tgaacaggca
     5881 cagctgcaga aggacgtcag ccaatggact gcccggttag agagctgcca gaaagagacg
     5941 gagacaaaag agcagcaact tcaggagctt caggatgaga tcagagagag caagctccag
     6001 ctagaccagc aggaaatggt gtttcaaaaa ctccagaaag aaagagaaag tgaggagcag
     6061 aagttagtgg ctagcatagt gtcgctggag cagcagcagg gacagctgga gagggagctg
     6121 atggaccaga aaagcaagct ggagtggctg ctcacagacg tgtcggccgc tgaaggacgc
     6181 ctcaggaccc tgcagaaaga ggagcggtgc actgagagcc tggagaagat gctgtcccag
     6241 gccaaacagc agctttcaga gcgggagcag cagctgatgg agaagtcggg tgacctgctg
     6301 gccctgcaga aagaggccga tggcatgagg gcagacttca gcctactgag aaaccagttc
     6361 ttaacagaaa ggaagaaggc agagaagcag gtggctgggc tgaaggaggc actgaagatc
     6421 cagcggagcc agctggagaa gaaccttctg gagcagaaac aggagaacag ctgcatgcaa
     6481 aaggaaatgg cgacaattga actggtagcc caggacaacc acgagagggc caggcgcctc
     6541 atgaaggagc tccgtcagat gcagcaggaa tacctggagc tcaagaaaca ggtggcaaac
     6601 cagaaagact tcgagaggag gcagatggag gtcagcaatg caatgaggac actgaagtct
     6661 gaggtgaaag acgaaatcag aaccagtctg aggaatctca accagttcct tccagatcta
     6721 ccagcagatc tcacagctat tttggaaaga gatgataact taagagagct ggaaagcgtg
     6781 aaagagaact tcccatttac cacaaatgag agaatttttg aagaaaaatc caactttccc
     6841 caagttcaca tcatggatga acaccggcgt ggagaagcac tccgtgagag actgcgccac
     6901 cgtgaagatc acctcaaggc tcagcttcga gactctatgt ctaagcaagc agaagtattg
     6961 atcaaaggaa agcggcagac agagggcacc ttacacagtc tgaggagaca agtcgatgct
     7021 ttaggagaac tggtcactag tacctccgtg gactcagcac catcacccag tctgtctcat
     7081 ctagagtctt cccttgtaga ggactcccaa catggacata gtcagagctc cttccaagtt
     7141 ctgcaggttc catcagaacc aaacatttac cgccactgag tgtctgcttg caggaaaagc
     7201 agctcctgcc aaggccagga aaatggtcat gtgtaaaccg tagaggaaat agctactctc
     7261 ctacctcact gacatcctaa tggaatgtca atgtcactat caagaccctg tgaagatgaa
     7321 agtgcactgt agctcgcacc atgtacaccg gggtttctgt aaaccacata cacttgtgga
     7381 ctagatgtgt gtattaacat aggacggaag cggctacttt ttacctttct cttccaatct
     7441 tggaacattt ttataaagcc agtgaaacca catatactga gtatgtcaag tcaccagaat
     7501 gtactaaaag cccctaggcg taattaataa gttattattt ttgattctga tccaaaattt
     7561 atttttaata tgaaaataaa aggtacagtc aa
//
