LOCUS       NM_001047865            4933 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus contactin associated protein-like 5A (Cntnap5a),
            mRNA.
ACCESSION   NM_001047865 XM_232709
VERSION     NM_001047865.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4933)
  AUTHORS   Traut,W., Weichenhan,D., Himmelbauer,H. and Winking,H.
  TITLE     New members of the neurexin superfamily: multiple rodent homologues
            of the human CASPR5 gene
  JOURNAL   Mamm Genome 17 (7), 723-731 (2006)
   PUBMED   16845472
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Oct 17, 2022 this sequence version replaced NM_001047865.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BN000868.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760393,
                                           SAMN12840110 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-474               JAXUCZ010000013.1  8968230-8968703
            475-579             JAXUCZ010000013.1  9209418-9209522
            580-773             JAXUCZ010000013.1  9246479-9246672
            774-921             JAXUCZ010000013.1  9385901-9386048
            922-1125            JAXUCZ010000013.1  9418880-9419083
            1126-1310           JAXUCZ010000013.1  9427259-9427443
            1311-1451           JAXUCZ010000013.1  9460015-9460155
            1452-1716           JAXUCZ010000013.1  9512863-9513127
            1717-1866           JAXUCZ010000013.1  9531647-9531796
            1867-2038           JAXUCZ010000013.1  9536278-9536449
            2039-2145           JAXUCZ010000013.1  9563061-9563167
            2146-2265           JAXUCZ010000013.1  9626695-9626814
            2266-2466           JAXUCZ010000013.1  9674299-9674499
            2467-2623           JAXUCZ010000013.1  9800743-9800899
            2624-2751           JAXUCZ010000013.1  9810918-9811045
            2752-2922           JAXUCZ010000013.1  9811222-9811392
            2923-3141           JAXUCZ010000013.1  9821742-9821960
            3142-3381           JAXUCZ010000013.1  9832736-9832975
            3382-3606           JAXUCZ010000013.1  9834553-9834777
            3607-3737           JAXUCZ010000013.1  9894330-9894460
            3738-3822           JAXUCZ010000013.1  9899834-9899918
            3823-4041           JAXUCZ010000013.1  9956135-9956353
            4042-4113           JAXUCZ010000013.1  9962628-9962699
            4114-4933           JAXUCZ010000013.1  9969175-9969994
FEATURES             Location/Qualifiers
     source          1..4933
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13p13"
     gene            1..4933
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /note="contactin associated protein-like 5A"
                     /db_xref="GeneID:297832"
                     /db_xref="RGD:1559812"
     exon            1..474
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     CDS             393..4310
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /note="contactin-associated protein like 5-1; cell
                     recognition molecule Caspr5a; cell recognition molecule
                     Caspr5-1; contactin-associated protein-like 5a;
                     contactin-associated protein like 5-1-like"
                     /codon_start=1
                     /product="contactin-associated protein like 5-1 precursor"
                     /protein_id="NP_001041330.1"
                     /db_xref="GeneID:297832"
                     /db_xref="RGD:1559812"
                     /translation="MDSLQRLNGLLTLVLSALWHLGLTASNYNCDDPLASFFSPMTFS
                     SSLDLTGSYSSAQLNWKMGTGGWSPVDSNAQQWLQIDLGNRVEITAVATQGRYGSSDW
                     VTSYRLMFSDTGHNWQHYTQEDSIWTFVGNMNADSVVHHRLLHSMRARFVRFVPLEWN
                     PNGKIGMRVEAYGCSYRSDVADFDGRSTLLYRFNQKTMSTLKDVISLKFKSMQGDGVL
                     FHGEGQRGDHVTLELQKGRLALYLNLDDSKARLSSTVPLVIMGSLLDDQHWHSVLLER
                     VGKQANFTVDMNTQHFQTKGETDALDIDYELSFGGIPVPSKPGTFVKKNFHGCMENLY
                     YNGVNIIDLAKRRKHQIYSGNVTFSCSEPQIVPITFVNSRSSYLMLPGTPQIDGLSVS
                     FQFRTWNEDGLLLSTELSEGSGTLLLILEGGTLRLLIKKVAGHGTEIKTGSGLNDGLW
                     HSVSINARRNRVTLTLDNDAASPAPETSRKQIYSGKSYYFGGCPDNLTDSQCLNPIKA
                     FQGCMRLIFIDNQPKDLISVQQGSLGNFSDLHIDLCSIKDRCLPNYCEHGGHCAQTWT
                     TFYCNCSDTGYTGATCHDSIYEQSCEVYRHKGHTAGFFYVDSDGSGPLGPLQVYCNIT
                     EDKIWMTVQHNNTELTRVQGSSPEKPYSMTLNYGGSMEQLEALIDGSEYCEQELKYHC
                     RRSRLLNTLDGTPFTWWIGRSNERHPYWEGSVPGVQQCGCGLEESCLDNAYFCNCDAD
                     MDEWSNNTGLFSLKDHLPVTHVIITDTNRSNSEAAWRIGPLRCNGDRHFWNAVSFSTE
                     ASYLHFPTFHAEFSADISFFFKTTALSGVFLENLGIKDFLRLEMSSPSEVTFTIDVGN
                     GPVELLVQSPYPLNDNQWHYIRAERNVKETSLQVDNLPLSLREASEEAYFRLHLTSQL
                     FVGGTSSRQKGFLGCMRSLHLNGQNTDLIERAKLMSGVTPGCPGHCSSYSSNCHNGGK
                     CVEKQSGYSCDCTNSPNEGPFCQKEISALFDPGTSVTYMFQEPYLVIKNTSLLSSPIY
                     TDTARSKETIMLNFLTAQAPTILLYLNFSSQKFLAILLSSNGSLQIRFRLSKGESHVY
                     TMSTENLANGRVHQVKISKDGPEISIQMDQQLFSYNFSTKVEFWTLKSLVLGKVTETL
                     GLDPEVAKVNILGFLGCLSSVQYNHIAPLKAALRHAGVAPVTVHGTLTESGCDSTLDS
                     DVNAVTTVHSSLEPIGKRDEQEPLTNTVQSDSAVIGGIIAVVTFVTFCVIGIMICFLY
                     QHKQSHRTNQTKEKEYPETLSNSFRNVIDLQNTASECKREYFI"
     exon            475..579
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            580..773
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            774..921
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            922..1125
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1310
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1451
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            1452..1716
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            1717..1866
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            1867..2038
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            2039..2145
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            2146..2265
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            2266..2466
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            2467..2623
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            2624..2751
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            2752..2922
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            2923..3141
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            3142..3381
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            3382..3606
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            3607..3737
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            3738..3822
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            3823..4041
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            4042..4113
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
     exon            4114..4933
                     /gene="Cntnap5a"
                     /gene_synonym="Caspr5-1; RGD1559812"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaatccagct ctcactctcg aacgaggtgc tttcagttat tggcaaagtc ggctccaaga
       61 ggtgccctgg agtgtggatc tgacccttta agaaaaagga tccgtaggaa gacgaggcag
      121 gcgaggaagc caagcgcaga agggaacagt tgcaggagct gtaaacgtcg atcacagctc
      181 ccatctcaga ggaagtcctg ctgctgtttc catggagtat ctgaggatca ggatggagtg
      241 aaaggaggag aggcatttca aggaggtggg agggggtcag gctctgcgga ggagagggaa
      301 cattgaaata gagaaaaagg aagggagtaa aaccaacgct tgtgcctgcg aatttgggat
      361 tctattggaa gaaatctctc actcaggggg aaatggattc tctacaaaga ctgaacggcc
      421 ttttgacttt ggtgctctct gccttgtggc atttaggatt aacagcgtca aactacaact
      481 gtgatgaccc actggcctcc ttcttctcac ccatgacttt ctccagttcc ttagatctca
      541 ctggaagtta cagctcagct caactgaact ggaaaatggg aactggtggt tggtccccag
      601 tagattcgaa tgcccaacaa tggctccaga ttgaccttgg aaacagagtg gagattacag
      661 ctgtagccac acagggaaga tatgggagct ctgactgggt gacaagctat cgcctgatgt
      721 tcagcgacac agggcacaac tggcaacatt acactcaaga agacagcatc tggacatttg
      781 taggaaatat gaatgccgac agtgtggttc accacagact gctgcactcc atgagagcgc
      841 gctttgttcg ttttgtgccc ctggaatgga atccaaatgg aaagattggc atgagagtgg
      901 aggcctatgg atgctcctat agatcagatg tagctgactt tgatggccgg agcacacttt
      961 tatacaggtt caatcagaag acgatgagca cgctcaaaga tgtgatctcc ctgaagttca
     1021 agagcatgca aggagatggg gttctcttcc atggagaagg acaacgtgga gaccacgtta
     1081 cccttgaact ccagaagggc aggctagctc tatacttgaa cctggatgac agcaaagctc
     1141 ggctgagcag cacagtgccc ttggtcatca tgggtagcct tctagatgat cagcattggc
     1201 attcagttct cctggagcga gtgggcaagc aggcaaactt cactgtggac atgaacacac
     1261 agcacttcca gaccaagggt gagacagatg ctctggacat agactatgag ctcagttttg
     1321 gaggaatccc agtaccaagc aaacctggga cctttgtaaa gaaaaacttc catggctgta
     1381 tggaaaacct ttactacaat ggagtgaaca taattgactt ggccaaaaga cgcaagcatc
     1441 agatctactc aggcaatgtc actttttcct gctcagaacc acaaattgtt cccatcacgt
     1501 ttgtcaactc caggagcagt tacctgatgc tgcctggcac cccccaaatt gatggtctgt
     1561 cagtgagctt ccagtttcgg acatggaatg aggatggtct gcttctgtcc acagaactgt
     1621 ctgaaggctc agggaccctg ctgctcatcc tggagggtgg gacactgagg ctcctgatta
     1681 agaaagtggc aggacatgga actgaaatca aaacaggcag tggcttaaat gatggcctgt
     1741 ggcattctgt cagcatcaat gccaggagaa atcgtgttac tctcacactg gataatgatg
     1801 ctgcttcccc agctccagaa acttcccgaa aacagattta ttcgggaaag agttactact
     1861 ttggagggtg ccctgacaat ctcaccgatt ctcaatgcct aaaccccatt aaggctttcc
     1921 aaggctgcat gaggctcatc tttattgata accagcccaa ggacctcatt tcagttcagc
     1981 aaggttccct ggggaatttt agtgatttac acattgatct atgtagcatc aaagacaggt
     2041 gtttgccaaa ctactgtgaa catggaggac actgcgccca aacctggact accttctact
     2101 gcaactgtag tgacactggt tacacaggag ccacctgcca tgactccatc tatgaacaat
     2161 catgtgaggt gtatagacac aaaggacaca cagctgggtt cttctatgtt gactctgatg
     2221 gcagtgggcc actgggaccc cttcaggtgt actgcaatat taccgaggac aagatctgga
     2281 tgacggttca gcacaacaac acagagctga ctcgtgtaca gggttccagc cctgagaagc
     2341 cctattccat gaccttaaac tacggtggca gtatggagca gctggaagct ctgattgatg
     2401 gctctgaata ctgtgaacag gagttgaaat accactgtag gagatcccgc cttcttaaca
     2461 cactagacgg aaccccattc acttggtgga ttggcaggtc caatgaaagg cacccttact
     2521 gggaaggttc tgttccggga gtccagcaat gtggatgtgg ccttgaggag agctgcctgg
     2581 acaatgcgta tttttgcaat tgtgatgcag acatggatga gtggtcaaac aacactggct
     2641 tgttttcctt gaaagatcat ttgcctgtaa ctcatgtaat tattacggat accaaccgat
     2701 caaactcaga agctgcttgg agaattggcc ccttacgttg caatggtgac cggcacttct
     2761 ggaacgccgt ctcattttct acggaagctt cttacctcca ctttcctacc ttccatgcag
     2821 aattcagcgc tgacatttct ttctttttta aaaccaccgc tttatctgga gtttttctag
     2881 aaaaccttgg cattaaagac ttcctccgac ttgaaatgag ctctccttct gaggtcacat
     2941 tcaccattga tgttgggaat ggccctgtgg agctccttgt ccagtctcct tatcctctga
     3001 atgacaatca atggcattac atccgggctg agagaaatgt caaggagact tcactgcagg
     3061 tggacaacct tccactgagt ttgagggagg cctcagagga agcctatttc cgacttcatt
     3121 tgactagcca gttgtttgta ggaggaacat catcaagaca gaaaggcttt cttggatgca
     3181 tgcgctcttt acacttgaat gggcagaaca cagacctgat agagagggca aagttaatgt
     3241 ctggagtcac acctggctgt ccaggtcact gcagtagcta cagcagcaac tgccacaatg
     3301 ggggcaagtg tgtggagaaa caaagtggct attcctgtga ctgcaccaac tcaccaaatg
     3361 aaggaccttt ctgccagaaa gagatttcag ccctttttga tcctggcacc tctgtaacat
     3421 acatgtttca agaaccatac ctggtgatca agaacacaag tctcttatct tcacctatct
     3481 acacagatac agctcgatcc aaagaaacca tcatgctgaa tttcttgaca gcacaagccc
     3541 ccaccatctt gctctacctc aatttctctt ctcagaagtt tttggctatc ttactttcca
     3601 gcaatggaag tttacagatt cgttttcgac taagcaaagg agaaagtcat gtgtatacca
     3661 tgagcacaga gaacttggcc aatggaagag tgcaccaggt gaagattagc aaagacgggc
     3721 cagaaatttc cattcagatg gaccagcaac tcttcagcta taacttctcc acgaaagttg
     3781 aattctggac actaaagtca cttgttctag gcaaagtcac agagactctt ggtttggacc
     3841 cagaagttgc taaagtaaac atcttgggtt ttcttggatg cctttcttca gtccagtaca
     3901 atcacatagc accattgaaa gcagccctcc gccatgctgg cgttgcacct gtgactgttc
     3961 atgggacctt gactgaatcc ggatgtgact ccactctaga ctctgatgtg aatgcagtga
     4021 ccactgtgca ttcttcatta gaacccattg gaaagagaga cgagcaagaa ccactcacaa
     4081 acacagtcca aagtgactca gcagtcattg gaggtatcat agcagtggtg acatttgtca
     4141 ctttttgtgt aatcggaatc atgatctgct tcctttatca acataagcag tcacaccgca
     4201 ccaatcagac gaaggagaag gaatacccag agactttaag caattcattt agaaatgtca
     4261 ttgacttgca aaacacagcc agcgagtgca aacgggaata cttcatctga accatagcag
     4321 gattacctgg tctgcctttt ttaaactgtt ttctctctct tttctcttct ctttcctgac
     4381 ttgtaattta gggattctct ttctctcact taccattgat tttctggaac acacatgatc
     4441 caccagaaac accaatctcc tttacccagc ttatgagctc aggtagttgt agctactgta
     4501 gtcctttgac atatgtgtca ttgtgaaaat gaccaatgga gacacagact ttgctatttt
     4561 aaacaaatag tcacatgtgc ctctctttgt agtccagttt ctaaacttca ctcattagtt
     4621 tcttaggtac ttggtcttgc aaccgtacat tagaattgag ttctgtggtg tctgtcttta
     4681 acaatcattc ctgcctaata ccttattctt atatatttca cctttatggg agaaaatgga
     4741 gtttgtctgt gacaaagaaa gcagtgttaa ctctttcttt aagcagtgtg tttatcaagg
     4801 agcccaatag agtaggaagg taggtatgag ggaatgtaaa ttcaccttgg aaagtaacat
     4861 tgattctcaa tgccctgtga gaaaggggca ttgggagata ttatgtcaca aagaaataca
     4921 tttaaaactg aga
//
