LOCUS       NM_001107432            4849 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus contactin associated protein family member 4
            (Cntnap4), mRNA.
ACCESSION   NM_001107432 XM_001076219 XM_001076244 XM_001076271 XM_001076298
            XM_241053
VERSION     NM_001107432.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4849)
  AUTHORS   Karayannis,T., Au,E., Patel,J.C., Kruglikov,I., Markx,S.,
            Delorme,R., Heron,D., Salomon,D., Glessner,J., Restituito,S.,
            Gordon,A., Rodriguez-Murillo,L., Roy,N.C., Gogos,J.A., Rudy,B.,
            Rice,M.E., Karayiorgou,M., Hakonarson,H., Keren,B., Huguet,G.,
            Bourgeron,T., Hoeffer,C., Tsien,R.W., Peles,E. and Fishell,G.
  TITLE     Cntnap4 differentially contributes to GABAergic and dopaminergic
            synaptic transmission
  JOURNAL   Nature 511 (7508), 236-240 (2014)
   PUBMED   24870235
REFERENCE   2  (bases 1 to 4849)
  AUTHORS   Spiegel I, Salomon D, Erne B, Schaeren-Wiemers N and Peles E.
  TITLE     Caspr3 and caspr4, two novel members of the caspr family are
            expressed in the nervous system and interact with PDZ domains
  JOURNAL   Mol Cell Neurosci 20 (2), 283-297 (2002)
   PUBMED   12093160
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473972.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_241053.4, XM_001076244.1, XM_001076271.1, XM_001076298.1,
            XM_001076219.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4849
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..4849
                     /gene="Cntnap4"
                     /note="contactin associated protein family member 4"
                     /db_xref="GeneID:307865"
                     /db_xref="RGD:1306459"
     exon            1..183
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     CDS             93..4025
                     /gene="Cntnap4"
                     /note="contactin associated protein-like 4; contactin
                     associated protein 4"
                     /codon_start=1
                     /product="contactin-associated protein-like 4 precursor"
                     /protein_id="NP_001100902.1"
                     /db_xref="GeneID:307865"
                     /db_xref="RGD:1306459"
                     /translation="MNMGSVAGAVLKMLLLLSTQNWNRVEAGNSYDCDEALVSALPQA
                     SFSSSSELSSSHGPGFARLNRRDGAGGWSPLVSNKYQWLQIDLGERMEVTSVATQGGY
                     GSSNWVTSYLLMFSDSGRNWKQYRQEDSIWGFSGNANADSVVYYRLQPSIKARFLRFI
                     PLEWNPKGRIAMRIEVFGCAYRSVVIDLDGKSSLLYRFDQNSLSPIRDIISLKFKTME
                     SDGILLHRAGPGGDHITLELRRGKLFLLIHSGEARLTSSSRPINLTLGSLLDDQHWHS
                     VLIQRLGKQVNFTVDEHRRHFHAQGEFNYLDLDYEISFGGISAPAKSVSLPYKYFRGC
                     LENLFYNGVDVIGLAKQHSPQIITMGNTSFSCSQPQSMPLTFLSTRSYLVLPASSKEE
                     AISVSFQFRTWNKAGLLLFSELWLMSGSLLLSLSDGRLKLNLHQPGKSPSDITAGAGL
                     DDGQWHSVSLSAKRNHLTVVVDGHISPASPWLGPEQVNSGGIFYFGGCPDKSFGSRCK
                     SPLGGFQGCMRLISIQDKMVDLLAVQQGSLGNFSDLQIDSCGISDRCLPNSCEHGGEC
                     SQSWSTFHCNCTNTGYTGATCHSSVYEQSCEAYKHRGNASGFYYIDSDGSGPLRPFLL
                     YCNMTETAWTVIHHNGSDLMRVRNAHSENVHTGVFEYVASMGQLQASINRAEHCQQEL
                     VYYCKKSRLVNQQDGSPRSWWVGRTNETQTYWGGSLPMPQKCTCGLEGNCIDAQYHCN
                     CDADRNEWTNDTGFLSYKEHLPVTKIVITDTGRPHSEAAYKLGPLLCRGDRPFWNAAS
                     FNTEASYLHFPTFHGELSADVSFYFKTTALSGVFLENLGITDFIRIELRSPTTVTFSF
                     DVGNGPFELSVHSPTHFNDNQWHHVRVERNTKEASLQVDELPPKIQAAPTDGHVLLQL
                     NSQLFVGGTATRQRGFLGCIRSLQLNGMALDLEERATVTPGVQPGCRGHCGSYGKLCR
                     HGGKCREKPSGFFCDCSSSAYAGPFCSKEISAYFGSGSSVIYNFQENYSLSKNSSFHA
                     ASFHGDMKLGRETVKFNFRTTRAPSLLLYMSSFYKEYLSVIIAKNGSLQIRYRLNKYH
                     EPDVISFDLKSMADGQLHHLKISREEGMVFVEIDENTRRQTYLSSGTEFSAVKSLVLG
                     RMLEYSDVDQETALAAAHGFTGCLSAVQFSHIAPLKAALQPGRPAPVTVTGHVTESSC
                     VAPAGTDATSRERTHSFADHSGTMDDREPLTHAIKSDSAVIGGLIAVVIFILLCVSAI
                     AVRIYQQKRLYKRNEAKRSENVDSAEAVLKSELHTQNAVGENQKEYFF"
     exon            184..294
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            295..488
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            489..636
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            637..840
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            841..1025
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1169
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1431
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            1432..1581
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            1582..1753
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            1754..1860
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            1861..1980
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            1981..2178
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            2179..2335
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            2336..2463
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            2464..2634
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            2635..2853
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            2854..3093
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            3094..3318
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            3319..3452
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            3453..3540
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            3541..3759
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            3760..3831
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
     exon            3832..4849
                     /gene="Cntnap4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaagacccag tcagtgctgg gtgaaggact gaggagaacc tgtctccagc gctctgagag
       61 ccactcgaga tcttttgggg agctcaaaaa ttatgaatat gggatctgtc gctggagctg
      121 ttctcaagat gttacttctg ttgtctactc aaaattggaa cagagtggaa gctgggaatt
      181 catatgactg tgatgaggcc ctggtgtctg ccttgcctca ggcatccttc agcagttctt
      241 ctgagctctc cagcagtcac ggtcctggat tcgcaaggct gaatcgaaga gatggagctg
      301 gtggctggtc cccacttgtg tccaacaaat accagtggct gcagattgac cttggagaga
      361 ggatggaagt cacatcagtg gccacccaag gtggatatgg gagctccaac tgggtgacca
      421 gctatctcct gatgttcagt gacagtggca ggaactggaa gcaatacaga caagaagaca
      481 gcatctgggg tttttctgga aacgcaaacg cggacagcgt cgtgtactat agactccagc
      541 cttcaatcaa agccaggttt ctgcgcttca ttcctctgga atggaacccg aagggcagaa
      601 tcgcgatgcg catcgaggtg ttcgggtgtg cataccggtc ggtcgtgatt gatcttgacg
      661 gaaaaagttc cctcctctac agatttgatc aaaactcctt gagtccaata agagatatca
      721 tatctttgaa atttaaaacc atggagagtg atgggatcct actgcacagg gcagggcctg
      781 gtggagatca catcacattg gagttaagaa gagggaagct cttcttgctt atccattcag
      841 gtgaagctag actgacctct agttccaggc cgatcaacct caccctgggc agcctgctcg
      901 acgatcagca ttggcattct gtgctcatcc agagactggg gaaacaggtc aactttacag
      961 tggatgagca caggcgtcac ttccatgccc aaggagaatt caattacctg gatcttgatt
     1021 atgagatcag ctttggaggg atctcagcac ctgcaaaatc agtgtccttg ccgtacaaat
     1081 attttcgtgg atgtttagag aacctcttct ataatggggt agatgtcatt gggttggcca
     1141 agcaacacag ccctcagatc atcaccatgg gaaacacctc attttcttgt tcacaaccac
     1201 agtctatgcc tctgactttt ctgagcacca ggagttactt ggtcctccca gcatcttcca
     1261 aagaggaagc catctcagtc agttttcaat tccgaacctg gaataaggca ggacttctgc
     1321 tcttcagtga actctggctg atgtcaggca gtcttctcct ctcgctcagc gatgggagac
     1381 ttaaactgaa tctccaccag ccagggaagt cacccagtga catcacagca ggtgctggct
     1441 tagatgatgg tcagtggcat tctgtctcct tgtctgctaa gaggaatcac ctgactgtgg
     1501 ttgtggatgg ccacatcagc cctgcttctc cttggttggg gcctgagcag gttaattcgg
     1561 gaggcatctt ttattttgga ggttgtccag acaaaagctt tggatccagg tgtaagagcc
     1621 ctctgggtgg atttcaagga tgtatgagac tcatctccat ccaggacaaa atggtagatc
     1681 tgcttgcagt ccagcagggc tcccttggca acttcagtga ccttcagata gactcctgtg
     1741 gcatctcaga caggtgtttg cccaattctt gtgagcatgg tggtgaatgt tctcagtctt
     1801 ggagcacctt tcattgtaac tgcacaaaca cggggtacac aggagccact tgtcacagct
     1861 ctgtctacga gcagtcttgt gaagcctata agcaccgagg gaacgcttct ggattctact
     1921 atatagactc ggatggtagt ggtccgctgc gcccgttcct cttatactgc aatatgaccg
     1981 aaacggcatg gaccgtcata caccacaacg gctccgactt aatgagagtc aggaacgctc
     2041 attctgagaa cgtgcacact ggggtttttg agtacgtggc cagcatggga cagctccagg
     2101 cctccattaa ccgggcggag cactgccaac aggagctcgt gtattactgc aagaagtcac
     2161 ggctcgttaa tcagcaagat ggtagccctc ggagctggtg ggtgggaaga accaatgaga
     2221 cacagaccta ctggggcggt tccttgccta tgcctcaaaa atgcacctgt ggcttggaag
     2281 ggaattgcat cgatgcccaa tatcattgca actgtgatgc cgatcggaac gaatggacca
     2341 atgacactgg attcctctcc tataaagaac atctgcctgt cactaagata gtgatcacgg
     2401 acacaggacg gccccattca gaagctgctt acaaactggg gcctctgctc tgccggggag
     2461 acaggccatt ttggaatgca gcttccttta atactgaggc ttcctacctc cacttcccca
     2521 cattccacgg agagctcagt gcagacgtgt ccttctattt caagaccacg gccctctctg
     2581 gggtgttttt agagaacctg ggaatcaccg acttcatacg aatagaatta cgctcaccca
     2641 caactgtcac cttttcattc gatgtgggga acgggccttt tgaactctct gtgcactccc
     2701 ccacccactt caatgacaac cagtggcatc acgtgcgagt ggaaaggaac acgaaagaag
     2761 cgtcccttca ggtggatgag ctccctccaa agatacaagc tgctcccacg gatggccacg
     2821 tcctcttaca gctcaacagt caactcttcg tgggtgggac cgccaccagg cagagaggct
     2881 tcctaggatg catcaggtcc ctgcagttga atgggatggc cctggatctg gaagaaagag
     2941 ccacggtgac tcctggggta cagccaggtt gtagaggaca ctgtgggagc tatggaaagt
     3001 tatgtcgcca tggagggaag tgcagggaaa agcccagtgg cttcttctgt gattgctctt
     3061 cctctgccta tgcaggacca ttttgctcca aagagatttc tgcctatttt ggatctgggt
     3121 cttctgtgat ttacaatttt caagaaaact attctttaag taagaactcc agcttccacg
     3181 cggcttcgtt tcatggtgac atgaaactgg gcagagagac cgtcaagttt aacttccgaa
     3241 ctacacgggc cccaagcttg ctgctctata tgagttcctt ttataaagaa tatctctcgg
     3301 ttatcattgc caaaaatgga agtttgcaga taagatacag gctaaataag tatcacgaac
     3361 ctgatgtcat cagctttgac ttaaagagca tggccgatgg gcagcttcac catctaaaga
     3421 tcagcagaga agaagggatg gtctttgtgg agattgatga gaatacaagg agacaaacct
     3481 acttgtcctc aggaacagaa ttcagtgcag tcaaatcttt ggtactgggg aggatgctag
     3541 agtacagtga tgtcgaccag gagaccgcac tggctgcagc ccatggcttc acaggctgcc
     3601 tctctgcagt gcagttcagc catattgcac ccctgaaggc cgctctacaa cctggccgcc
     3661 cagcccctgt taccgtgaca gggcatgtga ctgagtccag ctgtgtggcc cctgctggca
     3721 ccgatgccac atccagagaa aggacacatt catttgcaga tcactctgga acgatggacg
     3781 acagagagcc tctcactcat gcgatcaaaa gtgactctgc agtgattgga ggtctgatag
     3841 ctgttgtgat ctttatcttg ctttgcgtct ccgccatagc ggttcgcatt tatcaacaga
     3901 aaaggttata caaaagaaat gaggcaaaaa ggtcagagaa tgtagacagt gccgaggctg
     3961 ttttgaaaag cgagcttcat acccagaatg cagtcggtga gaatcagaaa gagtacttct
     4021 tctgattggc aatggtcctc taacttgcaa ggatgagttc ctttgaatag ccaggggctc
     4081 tcagtggatg ggaactgctc taaccctgac ggtacaggcg atggatctgc agcacggcca
     4141 tctttccatg tccaagctca ggatggctcc aggcagcctc ctccagcgat gcgctccttc
     4201 tagccatcat tctgttaaga aaggagctcg ctattggtgt ccctttccaa cttctgcaca
     4261 cgatcaaagc caagtttaac ttgcttcacg actatggttt ttcaatgggg gaatctagcc
     4321 cttctcttca ctctgtaaaa catattttgt tagaggttaa gaactcaaaa ttggactcta
     4381 aatggccttg ctttccttga gaccacatgt tctgtttgtt tttgtcttca catggtgttc
     4441 ttcatgagcc tggaaatgct tctgagatcc tgtttggctg gtgtttgcat cttcaatggc
     4501 caaaagtcta tacataaagc ccctttgcct ttctctgtat tacattcaat acatcaatag
     4561 tctgaaaaat tgttttcttg tctttggctt gtttgtattg ctctttttct atttgactct
     4621 tttctgatac tctttaatgc attttgttct gagtgtctga cttttaaacc tgaacatgca
     4681 attcctatat aaaaagactc ggaaagtatg gtggttgttg gtatgtgatg tcatgtctct
     4741 acagagagtt tcttgtcatt gtttggtgat gactggttta gaccctgagc aattgtaatt
     4801 ttccagactg tacaatgttt tccattaaac ttgtcacaaa acaagtcct
//
