LOCUS       NM_001402217            6378 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus contactin associated protein family member 3
            (Cntnap3), mRNA.
ACCESSION   NM_001402217 XR_005495408
VERSION     NM_001402217.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Mar 8, 2022 this sequence version replaced XR_005495408.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMN12840105 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-232               JAXUCZ010000017.1  273137-273368
            233-343             JAXUCZ010000017.1  285366-285476
            344-443             JAXUCZ010000017.1  313832-313931
            444-537             JAXUCZ010000017.1  313932-314025
            538-685             JAXUCZ010000017.1  378147-378294
            686-889             JAXUCZ010000017.1  384659-384862
            890-1074            JAXUCZ010000017.1  385516-385700
            1075-1221           JAXUCZ010000017.1  386480-386626
            1222-1483           JAXUCZ010000017.1  398329-398590
            1484-1627           JAXUCZ010000017.1  400973-401116
            1628-1799           JAXUCZ010000017.1  405177-405348
            1800-1906           JAXUCZ010000017.1  408279-408385
            1907-2026           JAXUCZ010000017.1  414325-414444
            2027-2224           JAXUCZ010000017.1  416708-416905
            2225-2381           JAXUCZ010000017.1  423671-423827
            2382-2509           JAXUCZ010000017.1  425524-425651
            2510-2680           JAXUCZ010000017.1  429443-429613
            2681-2899           JAXUCZ010000017.1  430394-430612
            2900-3139           JAXUCZ010000017.1  442381-442620
            3140-3364           JAXUCZ010000017.1  446207-446431
            3365-3498           JAXUCZ010000017.1  448029-448162
            3499-3586           JAXUCZ010000017.1  449244-449331
            3587-3808           JAXUCZ010000017.1  457007-457228
            3809-3880           JAXUCZ010000017.1  457377-457448
            3881-6378           JAXUCZ010000017.1  458736-461233
FEATURES             Location/Qualifiers
     source          1..6378
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..6378
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /note="contactin associated protein family member 3"
                     /db_xref="GeneID:290952"
                     /db_xref="RGD:1563615"
     exon            1..232
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     CDS             136..4002
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /note="contactin associated protein-like 3B; contactin
                     associated protein like 3; contactin associated protein 3"
                     /codon_start=1
                     /product="contactin associated protein family member 3
                     precursor"
                     /protein_id="NP_001389146.1"
                     /db_xref="GeneID:290952"
                     /db_xref="RGD:1563615"
                     /translation="MAWVKGAFLDVLLLLLLLLSAQTLPLVAAGDSHDCDAPLASSLP
                     QLSFSSSSQLSSSHGPGFARLNRRDGAGGWTPLVSNKYQWLQIDLGERMEVTAVATQG
                     GYGSSDWVTSYLLMFSDGGRNWKQYHQEESILGFPGNTNADSVVQYSLQPSFHTRFLR
                     FLPLAWNPKGRIGMRIEVYGCSYKSEVVYFDGRSSLLYKFDKGAIRPIREIISLKFKG
                     MQNSGIIFHGKGRHGNHIALELIKGKLVVYLSSGNGNLPPVNSIMNFTLGSLLDDWHW
                     HSVLIEILNYHVNFTLDKYTHHVHVNKESNYLDLDFEISFGEILMPEGHLLTSPHKNF
                     HGCLENVYYNGVNIIKLAKKHEPQILIKGNVSFTCPQPQTVPVTFQSSGSYLALPGSL
                     REDKMSLAFQFRTWNKAGRVFFSQPEHGSGSLVLFLTNGKLRLSLSEPGQPLQNITTG
                     AVLNDGLWHSVSLTAEGRYLSLVVDGDFSAQALMSVGIHLGDTYYFGGCPNNSSSSGC
                     ESPYGGFQGCLRLISIGDKVVDPIAVQQGVLGGFSDLQIDSCGIIDRCLPNYCEHGSG
                     CTQSWDTFSCDCDGTGYTGTTCHSSIYEQSCEAHRHRGSPSGLYYIDVDGSGQLAPFL
                     VYCNMTDTAWTVVQHGGPDVMTVRGGPEGHTRSATFSYAATAAQLRAVVDTADHCEQQ
                     VDLQCRTSGPSDIGDGTSLSWWVGRTNETYTYWGGSLPDPQKCTCGLEGNCIDSQYHC
                     NCDADRNEWTSDTIVLSHKEHLPVTEMVVTDTGRPHSEAAYTLGPLLCQGDKSFWNSA
                     SFNTEASYLHFPTFHGELTADVHFLFKTTISSGVFMENLGITDFIRIELRAPTEVTFS
                     FDVGNGPCELTVQSLTPFNDNRWHHVRAERNVKGASLQVDQLPQKTQPNPADGHVRLQ
                     LNSQLFIGGTASRQKGFLGCIRSLQVNGIALDLEGRAIMTPGVEPGCPGHCSSYGHLC
                     RNGGKCQEKRRGIACDCAFSAYDGPLCSHEISAYFEMGSSVTYNFQERPPLDENTSSL
                     ASSLHGDVILSRETITLSFRTTQTPCLLLYVSSFDEEYLSVILANNGSLQVRYKLDRH
                     RNADAFNFDLRNLADGHFHQLMINREEAVVSVEVNQSTKRQVILSSGTEFNAVKSLTL
                     GKVLEPLDVDPETQQAAAQGFTGCLSSVQFGLEVPLKAALNQDLTRVTIQGGVTAAAH
                     CAEGPGSAVWKLSPGPSMGAGHSGSVEDRQPLPNTDRSDPGVIGGITAVVIFILLCAS
                     AIAIRVHQQRRLHQKNESTVSKTEEC"
     exon            233..343
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            344..537
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            538..685
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            686..889
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            890..1074
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1221
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1483
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1627
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            1628..1799
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            1800..1906
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            1907..2026
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            2027..2224
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            2225..2381
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            2382..2509
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            2510..2680
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            2681..2899
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            2900..3139
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            3140..3364
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            3365..3498
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            3499..3586
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            3587..3808
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            3809..3880
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
     exon            3881..6378
                     /gene="Cntnap3"
                     /gene_synonym="AABR07026805.1; Cntnap3b; LRRGT00090;
                     RGD1563615"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaggggggc tggcagccca tgagttatgg gaggaaagcc ggcaagcagt gaggactgac
       61 agaagccagg caggacactg gggccaccca agcggctgct gctctcttta gattttccgg
      121 gagcccaaag tgatcatggc ctgggtcaaa ggagcattcc tggatgtgtt gctgcttttg
      181 ctgctgctgc tgtctgctca gaccctgccc ctggtagcag cgggagattc acacgattgt
      241 gacgctccat tggcttcctc tttgccccag ttatccttca gcagttcctc acagctgtcc
      301 agcagccatg gccctggctt tgcgagacta aatcgaagag atggagctgg tggatggaca
      361 ccacttgtgt caaataagta tcagtggctg cagattgacc ttggagaacg aatggaggtc
      421 actgctgtgg ctacccaggg gggatatggg agttctgact gggtgaccag ctacctcctg
      481 atgttcagtg atggtggaag gaactggaaa cagtatcatc aagaagaaag catcttggga
      541 tttccaggaa acacaaatgc agacagtgtg gtgcaatata gtctccagcc ttccttccac
      601 accaggttcc tgcgctttct ccccttagcc tggaacccca agggcaggat tggaatgcgg
      661 atagaagtat atgggtgttc atacaaatct gaagtggttt attttgatgg acgaagttct
      721 ctgctctaca aatttgataa aggtgccata agaccaataa gagagattat ttctttgaaa
      781 tttaaaggca tgcagaacag tgggattata ttccatggaa aaggacgaca tgggaatcac
      841 attgctttgg aattaatcaa gggaaagctt gttgtgtatc ttagttcagg caatggaaac
      901 ctgccccctg ttaattctat catgaacttc accctaggca gccttctgga tgactggcac
      961 tggcactctg tgctcattga gatcctcaat taccatgtga acttcaccct ggacaaatac
     1021 acacatcatg tccatgtgaa caaggaatcc aattacttgg atcttgattt tgagatcagc
     1081 tttggagaaa ttctgatgcc tgaaggacat ttgctgacat ccccacataa aaattttcat
     1141 gggtgtttag aaaatgttta ttacaatgga gtcaatatta ttaaattggc caagaaacat
     1201 gaaccacaaa tcctaattaa gggaaatgtg tccttcacgt gtccacagcc acagacagtt
     1261 ccagtgactt ttcagagttc tgggagttac ctggctttgc caggcagttt aagggaagat
     1321 aaaatgtccc ttgcttttca gtttcgaacg tggaacaagg caggacgagt gttttttagc
     1381 caaccagagc atggttcagg aagtttggtc ctgtttctta cgaatggaaa actcagactg
     1441 agcctctctg agccaggtca acccttgcag aacatcacaa caggagccgt actgaacgat
     1501 gggctgtggc actcagtttc cttgactgct gagggtcgct acctaagcct tgtggtagat
     1561 ggagacttct ctgctcaggc cctgatgtct gtggggattc acttgggcga cacttactat
     1621 tttggaggtt gtcccaacaa cagctctagc tctggatgtg aaagtcctta tggaggcttc
     1681 cagggctgcc tgaggctcat ctctattggt gacaaagtgg tggatcctat tgcagtacag
     1741 cagggagtgc tggggggctt cagtgacctc cagatagact cctgtggcat catagaccgg
     1801 tgtttgccca actactgtga acatgggagt ggatgtaccc agtcatggga caccttctcc
     1861 tgtgactgtg acggcacagg ctacactgga acaacctgcc attcctccat ctatgaacag
     1921 tcttgtgaag cccacaggca cagagggagc ccttctggac tttactacat tgatgtagat
     1981 ggaagtggac agctggcgcc atttcttgtg tactgcaata tgacagacac agcatggact
     2041 gttgttcagc acggagggcc tgatgtcatg acagtcagag gtggcccaga aggacatacg
     2101 cgttctgcaa ccttctccta cgctgccact gcagcacagc tgcgtgctgt ggtggatact
     2161 gcagaccact gtgagcagca ggtggaccta caatgcagga cctcagggcc ctcagacata
     2221 ggagatggaa cctcactgag ctggtgggtt ggaagaacca atgaaacata cacttactgg
     2281 ggaggttctc tgcctgatcc tcaaaagtgt acttgcggat tggaggggaa ctgcattgat
     2341 tctcaatacc actgcaactg tgatgctgac aggaacgaat ggaccagtga cacaatagtc
     2401 ctttcccata aggagcacct gccggtcact gagatggtgg tgacagacac aggccgtcca
     2461 cactctgaag ctgcttatac gctggggcct ttgctttgcc agggagacaa gtcattttgg
     2521 aattcagctt ccttcaacac cgaggcttcg taccttcatt tcccaacttt ccatggagag
     2581 ctcactgctg atgtccactt cctttttaag accaccattt cttctggtgt attcatggag
     2641 aatctgggaa tcactgattt catcagaata gagttgcgag ctcccacaga agtgaccttt
     2701 tcctttgatg ttgggaatgg accttgtgaa ctcactgtac agtcgctgac tccctttaat
     2761 gacaaccggt ggcatcatgt gagggcagaa aggaatgtta agggagcatc tcttcaggta
     2821 gaccagctcc ctcagaagac acaacccaat cctgctgatg gacatgttcg actgcaactc
     2881 aacagccagc tcttcattgg ggggacagcc agcaggcaga agggcttcct gggatgtatc
     2941 cggtccctcc aggtgaatgg aatagcactg gacctggagg gaagggccat aatgacacca
     3001 ggagtggagc caggatgtcc aggtcactgc agcagctatg gacacctgtg tcgcaatgga
     3061 ggaaagtgtc aagagaaacg cagagggatt gcttgtgact gtgccttctc tgcctacgat
     3121 gggccactgt gctcacatga gatttctgcc tattttgaaa tgggctcctc agtgacctat
     3181 aattttcaag aacgtccgcc cctcgatgaa aacaccagct ctctggcttc ttcattacat
     3241 ggggatgtca tcctgtccag agaaaccatc acgttgagct tccgaaccac acagacacca
     3301 tgcttattgc tttatgtgag ctcttttgat gaggaatacc tttcagttat cctggccaac
     3361 aatggaagtt tgcaggtgag gtacaagctg gacagacatc ggaatgcaga tgctttcaac
     3421 tttgacctta gaaacttagc agacggtcac tttcaccagc tgatgattaa cagagaagaa
     3481 gcagtagtct ctgtagaggt taaccagagt acaaagagac aagtcatctt gtcctcaggg
     3541 actgaattca atgctgtcaa atcactcaca ttgggaaagg ttttagaacc cctggatgtt
     3601 gaccctgaaa cacagcaggc agctgctcag ggcttcacag gctgcctctc ttctgtgcaa
     3661 tttggcttgg aagtcccact gaaggctgca ctgaatcagg acctgaccag agtcactatt
     3721 caaggtggtg tgactgctgc agctcattgt gcagagggtc ctggctctgc agtgtggaaa
     3781 ctgtctccag ggccctctat gggtgcaggt cactctggat ctgtagaaga tagacagccc
     3841 cttcctaaca cagacaggag tgaccctggg gtcattggag gaataacagc agttgtgata
     3901 tttattttgc tctgtgcatc cgccatagcc atacgggttc atcaacagag aagattacac
     3961 caaaaaaatg agtcaacagt ctcaaaaact gaagagtgct agaactgctc tcaaaagtga
     4021 aatatgagtt caaacagaag cagtcttctt aggtgactat ggctggcctg cctcttggca
     4081 atcccattct tcctgtgcca gagagtgccc agggcctgct tacagaggac taacactctc
     4141 agtctccagg aggctggcta ctttcctcag ccaaactctc cctcctagca attcactagc
     4201 aagggaatgg ggtcattaat catggtggag tagtttcccc aggtggaatg ctcttttcta
     4261 aatagggcct tgatttgtgt aacagttatg gattttagct gagaaaataa gtagacatca
     4321 agctattgtc ctgcttagaa aatgggacag aactttcatt cagataaagt taaacagttg
     4381 tttggttggt tttggttatt gttgttgttg ttgttgttgt tgttgttgtt gttattgttg
     4441 ttacttgaaa gcttatctgg gatctctttg ttgctcttct gccaacatgt ataaattaga
     4501 gctatttagc ttgcatctcc atggtcctgg aatgcagggt caagtgccct gtaaaaaaaa
     4561 aaaaagaaca accaactttc ctgtttgctg gccaatacaa agagaggcct gaaaatattt
     4621 tttgtgcatt gcttttttct agttgaccgt ttctaatcat tttgataaat ttcaaagttg
     4681 aaactggtct tgaatgttat gaaattttaa tgttggtttt tgtaacggac agaaaattaa
     4741 taggtaacaa gatggatgca tagtgaatag tcactaagaa aggatgctgt tttctttgta
     4801 atttgtaatt acaggttttt ataaattatg atcatgtttt aaactaaatt tatagccata
     4861 tgtactattt cttactcaac aacacccaag tcaaatataa cctttaactt atttattccc
     4921 aattattgaa agaatctgtc agcttttctt tgttatcctg tattctattt ttctaaaaat
     4981 tgttaccagt atgctttgaa tttctatgac tatgctgaat aggtagagaa catcttttca
     5041 atttattagc tcttctccag ccgaagagcc cctattcctt ttccaaagtt ggaattgctt
     5101 tgtgcataaa tactgcatat tatcccttct ctccagtttg acagtgtaaa ctgaaaggtg
     5161 ctaactccaa ggaaagacag cacttacctg atctgcatta aacataccac tgtagtcgta
     5221 agttatgatc acaggaacaa atttccatag attctcacaa atcgagtgtg cactaaaaac
     5281 tgaagtatgt ctcactaggg tttctacaca cactaaaaac agaggacagg attaatttcc
     5341 tggagacagt tgcaggaact aataacgagg cagtgttacc tggtaattaa atgaactagt
     5401 ttgtaccagt tacagtaaag tcaatgatgc tacattcacc aggatcctga tactgattgc
     5461 ctgccaagga ctaagggggg tgaacagctc atccatacct gggaacgttt ggaatacccc
     5521 acttcaacat caacacttca tacagaattt ctatctcatt tgtgttattt ttgaaagagg
     5581 gaacatagat ctcctgtatc ttatatctgc tcctagaatc ctcattttca ttgatgttta
     5641 tgtggtgggc agttttctat ttatattgtt ttattgtgta tatgtgtgct tatatatatg
     5701 gtaatatgtg ggagacacaa cctcataaat actatgtgct ctgtggattt tcttctcaag
     5761 agccttctta gaatgaggac attgtctaca aaaatatagt tacattttat tagccaatat
     5821 aaacaccatg tagtcactat aacttttaca gatacatctc taatttcaca gaagacttta
     5881 gaagctggga tttcacaggg ttctagaaga taaattatcc cagcccactg tttcctactt
     5941 taggcaagat agcgaaacta aatcatcaaa tcgccctgat atgtcatgta ctaacactct
     6001 tcccggatga ctttcggatt ttatcttttc atttgaaaat aaattcattt ctgagatatg
     6061 atagggaaac tattttaagg gaagttgtat aaaaataaat tcgtttttga aataaaataa
     6121 ttattttaag gaaagttgtg taaaacaaat tagaatgtga ttttccctaa tttgcacaaa
     6181 tgtatgcagg taagttcatt ctgcactggt ttaacataac gtgaatggaa ataaatcttt
     6241 actaattgct agattaaaac tatatgaatg cacacgttta aagatttgtc agaaaacaaa
     6301 cgtctaagac taagtcaact aaagtctgtt ttcagtactt ctgctgatat gatgaaaaca
     6361 atcctaagta ttctttgg
//
