LOCUS       XM_039109025           10175 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus contactin associated protein 2
            (Cntnap2), transcript variant X1, mRNA.
ACCESSION   XM_039109025
VERSION     XM_039109025.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427648.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10175
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..10175
                     /gene="Cntnap2"
                     /note="contactin associated protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 25 ESTs, 1 long SRA read, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 41 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500105"
                     /db_xref="RGD:1307076"
     CDS             700..4698
                     /gene="Cntnap2"
                     /codon_start=1
                     /product="contactin-associated protein-like 2 isoform X1"
                     /protein_id="XP_038964953.1"
                     /db_xref="GeneID:500105"
                     /db_xref="RGD:1307076"
                     /translation="MVISLRAGCRAALSLWILSSFICRAWTAPSSFQKCDEPLVSGLP
                     HVSFSSSSSLSSSYAPGYAKINKRGGAGGWSPSDSDHYQWLQVDFGNRKQISAIATQG
                     RYSSSDWVTQYRMLYSDTGRNWKPYHQDGNIWAFPGNVNSDSVVRHDLQHAVVARYVR
                     IVPLDWNGEGHIGLRAEVYGCSYWADVINFDGHVVLPYRFRNKKMKTLKDVIALKFKT
                     SESEGVLLHGEGQQGDYITLELKKAKLVFSLNLGSNQLGPIYGHTSVTSGSLLDDHHW
                     HSVLIERQGRSINLTLDRSMQHFRTNGEFDYLDLDYEITFGGIPFSGKPSSSNRKNFK
                     GCMESINYNGVNITDLARRKKLEPSNVGNLSFACVEPYTVPVFFNATSYLEVPGRLNQ
                     DLFSVSFQFRTWNPSGLLLFSHFADNLGNVEIDLVESKVGVHINTTQTKTSQIDISSG
                     SGLNDGQWHEVRFLAKENFAVLTIDGDEASAVRTNSPLQVKTGERYYFGGFLNHMNNA
                     SHSALQPSFQGCMQLIQVDDQLVNLYEVAQRKPGSFANVTIDMCAIIDRCVPNHCEHG
                     GKCSQTWDSFKCTCDETGYSGATCHNSIYEPSCEAYKHLGQTSNYYWIDPDGSGPLGP
                     LKVYCNMTEDKVWTIVSHDLQMQTTVVGYNPEKYSVTQLIYSASMDQISAITSSAEYC
                     EQYVSYFCKMSRLLNTPDGSPYTWWVGKANEKHYYWGGSEPGIQKCACGIERNCTDPK
                     YYCNCDADYKQWRKDAGFLSYKDHLPVSQVVVGDTDRQGSEAKLSVGPLRCQGDRNYW
                     NAASFPNPSSYLHFSTFQGETSADISFYFKTLIPRGVFLENLGNTDFIKLELKSSTEV
                     SFSFDVGNGPVEIVVRSPSPLNDDQWHRVTAERNVKQASLQVDRLPQQIRKAPTEGHT
                     RLELYSQLFVGGAGGQQGFLGCIRSLRMNGVTLDLEERAKVTSGFKSGCSGHCTSYGA
                     NCENGGKCIEKYHGYSCDCSNTAYDGTFCNKDVGAFFEEGMWLRYNFQALTVTARDTG
                     SRAENSADQQQHLAPDLAQEQIHFSFSTTKAPCILLYVSSLTTDFLAVLVKPTGNLQI
                     RYNLGGTREPFNIDVDHRNMANGQPHSVNITRHEKTIILKLDHYPAAGYHLPSSSDTI
                     FNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNHIAPLKAALRQTNASAHV
                     HIQGDLVESNCGASPLTLSPMSSATDPWHLDHLDSASADFPYNPGQGQAIRNGVNRNS
                     AIIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAESAESADAAIMNNDPNFT
                     ETIDESKKEWLI"
ORIGIN      
        1 caagaaggga agaagcgggg aagcttccct tcgccaggct cgcccgggtc tgcaggcgct
       61 gctggaggca gcagtctcca gctcccggct gcggtggtag ctgctgagct ctctctccag
      121 cgatgcttct tagtgccgcg ccacgctgag gccgaacgtg tacgggggct tgcctcagct
      181 ccatacatcc ttgatctcag cctgggagct aacagcctac tggaaaaccc tctgagtcgc
      241 gctgcccagt ggccacccaa gcgctcgccc gcagtggcaa ccgcagcatc accggaccca
      301 tcgctctcgg ttctttccta cggtctgagt tctctccaga tttcccccac gcgtcctttg
      361 attttttttt ccagaagaga gggcggggta ggtgtcagtc ccctcctctc tctcacccct
      421 cctattcctt ctcggtttga atttcttccc ctggcatttc actggctctc agagcaagag
      481 accagaccca cagagagggg aaagccaggc tgcgcctccc ttgctgctgc cagcccagaa
      541 ctggaaccta gagagggtga ggggagagga agcaaagcag gaggagcttg gcttcctctc
      601 gcatctgagg acagaccggt tcacttcaag aacctcacag agaggcagac tgcatctctg
      661 cagcgagctt ttggagtacc actggcccgg aggctaagga tggtgatttc tctgagagca
      721 ggctgcaggg cagcgctctc gctctggatt ctcagcagct tcatctgcag agcctggaca
      781 gctccctcct ccttccaaaa atgtgatgag cctctcgtct ctggtcttcc ccatgtgtcc
      841 ttcagcagct cttcctccct gtccagcagc tatgcacctg gctatgccaa gatcaataag
      901 cgaggaggtg ctggtggatg gtctccatca gacagtgacc actatcaatg gcttcaggtt
      961 gactttggca atcggaagca gattagtgcc attgcaaccc aaggaaggta cagcagttct
     1021 gactgggtga cgcaatatcg aatgctctac agtgatacag ggagaaactg gaaaccctat
     1081 catcaagatg gcaatatctg ggcttttccg ggaaacgtca actccgacag tgtggttcgg
     1141 cacgacctac agcacgcagt agttgcccgc tatgtacgca ttgtgcccct ggactggaat
     1201 ggagaaggcc acatagggct gcgtgcagaa gtctacggct gctcatattg ggctgacgtt
     1261 atcaactttg atggccatgt ggtgttacca tatcgattca gaaacaagaa gatgaaaaca
     1321 ctcaaagatg ttattgcttt gaaatttaag acctctgaga gtgaaggagt acttctgcat
     1381 ggtgaaggac agcaaggaga ttacattact ttggaactga aaaaggccaa gctggtcttc
     1441 agtttaaatc taggaagcaa ccagcttggg cccatctatg gccacacatc tgtgacatct
     1501 gggagcctgc tggatgatca ccactggcac tctgtactca ttgagcgcca gggacgcagc
     1561 attaacctga ccctggacag gagcatgcag catttccgca ccaatggaga gtttgactac
     1621 ctggacttgg actatgagat aacatttgga ggcatacctt tctctggcaa gccaagttcc
     1681 agtaatagga agaactttaa gggctgcatg gaaagcatca actacaatgg tgtcaatatt
     1741 accgaccttg cccgaagaaa aaaattagag ccatcgaatg tggggaatct gagctttgct
     1801 tgtgtggagc cctatacagt accggtcttc ttcaatgcta caagctatct ggaggtgcct
     1861 ggaaggctta atcaggacct gttctcagtc agtttccagt ttaggacctg gaaccccagt
     1921 ggtctcttgc tgttcagtca ctttgcagat aacttaggca atgtggaaat tgaccttgtg
     1981 gagagcaaag tgggagtcca cataaacact acacagacca agacaagcca aatcgacatc
     2041 tcctcaggct ctgggctgaa tgatgggcag tggcatgagg ttcgcttcct ggccaaggaa
     2101 aacttcgcag tcctcaccat tgatggagat gaagcatcag cagttcggac caatagtcct
     2161 cttcaagtga agactggcga gagatactac tttggaggat ttctgaacca catgaacaat
     2221 gccagtcact ctgcccttca gccatcattc caaggatgca tgcagctcat tcaggtagat
     2281 gaccagcttg taaatttata tgaagtggca cagaggaagc caggaagctt tgcaaatgtc
     2341 accattgaca tgtgtgccat catagacaga tgtgtgccca atcactgtga gcatggtggg
     2401 aagtgctcgc aaacatggga cagcttcaaa tgcacttgtg atgagacagg atacagcggg
     2461 gccacctgcc acaactccat ctacgagccg tcctgtgaag cttacaaaca ccttggccag
     2521 acatcaaatt actactggat agatcctgat ggcagtggac cactggggcc tctgaaggtt
     2581 tattgcaaca tgacagagga caaggtgtgg accatagtgt ctcatgactt acagatgcag
     2641 actacagtgg taggctacaa cccagaaaag tactctgtga cacagctcat ctacagtgcc
     2701 tccatggacc agatcagtgc catcaccagc agtgctgagt actgcgaaca gtatgtctcc
     2761 tacttctgca agatgtccag gttgttgaac accccagatg gaagtcctta tacctggtgg
     2821 gttggcaaag ccaatgagaa gcactactac tggggaggct cagagcctgg aattcagaag
     2881 tgtgcctgcg gcatcgaacg caactgcaca gaccccaagt actactgcaa ctgtgatgcg
     2941 gactacaagc aatggaggaa ggatgctggc ttcttatcct acaaagatca cctgccagtg
     3001 agccaggtgg tggttggaga tactgaccga caaggctcag aagccaagct gagcgtgggt
     3061 cccctgcgct gccaaggaga cagaaattat tggaatgctg cctccttccc aaacccatca
     3121 tcctacctgc acttctctac cttccaaggg gaaacaagcg ctgacatttc tttctacttt
     3181 aagacattaa tccctcgggg agtatttctg gaaaatctgg ggaacacaga cttcatcaag
     3241 ctggagctca agtcttccac agaagtgtct ttttcatttg acgttggaaa tgggccagtg
     3301 gagatcgtgg tgaggtcacc ttcccctctc aatgatgacc agtggcatcg agtcactgca
     3361 gagaggaatg tcaaacaggc cagtctccag gtggatcgcc tgccccagca gatccgaaag
     3421 gctccgactg aaggtcacac ccgcctggaa ctctacagtc agctgtttgt tggtggtgct
     3481 gggggccagc agggcttcct gggctgcatt cgctccttga ggatgaatgg agtgacactt
     3541 gacttagaag aaagggcaaa ggtcacatct gggttcaaat ctggatgctc cggccattgt
     3601 accagctatg gggctaactg tgaaaatgga ggcaaatgca tcgaaaaata tcatggctac
     3661 tcctgtgact gctctaacac agcctatgat gggacattct gcaacaaaga tgttggtgcc
     3721 ttttttgaag agggcatgtg gctgcgctat aacttccagg ccctgacagt cactgccaga
     3781 gacacaggca gcagggctga gaattctgca gaccagcagc agcacttggc tccagacctg
     3841 gcccaggagc agatccactt cagcttcagc actaccaagg caccctgcat cctcctctat
     3901 gtcagctccc tcaccactga cttcctagct gtgctggtca agcccacagg aaacttgcag
     3961 atccgatata acctgggagg aaccagagag ccattcaata ttgatgtaga ccacaggaac
     4021 atggccaatg gacagccgca cagtgtcaac atcacccggc atgagaagac cataattctc
     4081 aagctcgacc attatcctgc tgcgggttac catctgccca gctcctctga cacgatcttc
     4141 aattctccca agtcgctctt ccttgggaaa gttatagaaa cggggaaaat cgaccaagaa
     4201 attcacaaat acaacactcc tggcttcaca ggctgcctgt ccagagtcca gttcaaccac
     4261 atcgcccctc tcaaggcagc cttgagacag acaaacgcct cggcccacgt gcacattcag
     4321 ggtgatctgg tggagtccaa ctgcggggcc tccccactga cgctctcccc tatgtcttcg
     4381 gccactgacc cttggcacct agaccacttg gattcagcca gtgctgattt cccgtacaac
     4441 ccaggacaag gccaagctat aagaaatgga gtcaacagaa actcagctat cattggaggg
     4501 gtcatcgccg tggtgatttt caccatcctc tgcaccttgg tcttcctcat ccggtacatg
     4561 ttccgtcaca agggcaccta ccacaccaac gaggccaagg gagctgagtc agctgagagc
     4621 gcagatgctg ccatcatgaa caatgacccc aacttcacag agaccattga cgagagcaaa
     4681 aaggagtggc ttatttgagg ggtggctttt cagccatggg atagggaggg aggagttaag
     4741 ggaggagggg gagggacaag agcaccccac gtcatacccc tgagcacacg cttacactat
     4801 cagcacaagc tggggaaggc aagcaatcca atactcttaa gactgatggc cacacaaaat
     4861 atacttttta atatttcttt atagctgagt tcccccttcc atatcaaaac aaaataatac
     4921 aaaaatgctt ttagagttta agcaacagtt gaactttgta ggtactatct gtcttttttt
     4981 gtgtgtgttt agaggtgttc taaaaacccg tggtaacagg gcaagttttc tacattttta
     5041 agagccctta gaatgtggat attttttttc tcaagaaaaa ttgatataca tccatgcagc
     5101 ctctgacatt ctctttcttt tgcatctagt cgacttttaa tgggctgttg tagcaactag
     5161 tttgtgtcca agtaatattt cttttggtgt cccataaaat ggaaataaga aaagtgataa
     5221 acagtctatt tgcccagtct tcttcagtga cacctcagcc taggccagtt ttctgaaggt
     5281 tcctgtctgg cctcagccag gggaaggaga gtgagtggcc tgtccgcagc aatgtaacca
     5341 gcacaagtgg agacaagcac ccaagaatcc agcaaagaaa tgcatatcgg gcttattgct
     5401 tttgttttca ttgacttcta catgccgatg tcctatgtat gtagccttag acctgtttag
     5461 tatctgtaac tatcagctag aagactgtgg tgaccaactg ctctaggact tctcctctgt
     5521 tttaactaca ttattggatt ttatgtgtat atgcgcctcc atggggaatt agagccagag
     5581 ggaatgtctc ctttgctctg tttcttttat atttataaca gaaatatgga cactttctag
     5641 tgaatgcata agttagtgcg cttttcttct tttgctttaa acttcacgtt tttacactgc
     5701 tgtgatgagg tcctagcaga cagcatcctc cggatggcac agtccaataa agccaacttg
     5761 cagccgccat tactctggaa tcatgtggga gacactgcca tattttaaac caactcgatc
     5821 acaaggacac tgtcatgata cacagacctg tgacaaatac attgaatctg aagtcaccac
     5881 catccggtca tcaagagaac acgattgtct aataaataac acatcttagg gtaatcagga
     5941 atcttgggca atttgctaca aaaaaataat aacttcttga ttttctgtaa aaataatagg
     6001 ctttgtgtga gtaaatggga gcaattcttc ctattggagc acccaaaagg aatttaatca
     6061 atttattttt ttaattgcac aaaagttctc cctcgaatgg ttgccattta taattgtata
     6121 cgtcaggcct cttatactta aaaacctctt tttaaaaatt ttgtaggctc caccattttg
     6181 aggaattaaa tgtgaagatt ctttctcctc ttagaacagt gaggttaacg cagtattgat
     6241 gctctttttc tcgtggtctg tcttaataag ctgcttaccc tagttagttg ggattttacc
     6301 cagatactct caaggttctc caaatgctta atgtattgga ggatctcaac ttcttgaata
     6361 atagaaaact ttatcccaag cctctctttg caccagttta caacgggctc caaaaggagg
     6421 caagtgtccc cccttgcatc aaggaaaccg aataaaaggg aaccctgaga gtgtttttaa
     6481 ttgcaggcag acctcagaca gtcccataaa taccccgaat tgtcaagcct tgttcattct
     6541 ttcataaaac atattaaatg gaaaggtatt taacagaaca aactgtgaga acagctgtaa
     6601 cgtttactta tgagagcaca tttgagacca aatgtcattt tatttcatca agatacctga
     6661 ccatagtgta ttcttgtcca taatttcaaa ttgaaaaagc aaaggtttac cattatggct
     6721 tgaaattgtt tctggtttaa aaaaaaaaaa caacaactta ttttgcaggc attactttgg
     6781 cacttaacaa atactgtcag atggaaatgc gtgccttctg gcatttcctg agatagctgt
     6841 gttcctctgc ttcatctcag cacttctctc ccccaatgat gagcaagaaa aaccaccaag
     6901 gacagcccca gtgttaaaat gtcctcaccc tgtccttctc ctcactcgtt ccttctcttg
     6961 cttctgccac aaaagacaaa gaccgaaggc cagtccgtct ctcacaatta gcaaagccag
     7021 ggtcctgaat gatgtcatca gttaagacac gcaagagatc cgctgacaca gtctctccta
     7081 agcagttaca agatggctga cagacaggac acagaaaggc gggtacagta gtaagtagct
     7141 acattaattg ctctccttgg aatgacaccc ttaaccaaac taatcacatc tgtgtataac
     7201 agacatgacc agtctgttct gaatgggaaa tacttgctca tttgaagaag aaggaattct
     7261 ctgttgcagt tcttccgttg acagtttggc atgacgctgc ttcaagagtc atgacataac
     7321 gcagacttgc ctgatcctat ctgttgttgt tctccactgc catctcaaca tcttatatcc
     7381 agtatatcat ccacaaagca caaactaatg gaaagccctg taagcaataa caatatataa
     7441 accaaacaaa ccccaagata ctgtaccaaa ggaataagac acactggtgc atgcctgtaa
     7501 tcccagcatt tgagagactg cggcaggagg gtaatgagtt caaggtcagc ctgggctact
     7561 tagcaaattc cagtcagcct tgagctgtct agtgagacaa gtctcaaaaa agttctaaat
     7621 aaataaatga agcttcagag aacactgatg actgactgag gcttatgtgt gcaggaaact
     7681 tgctctgcat ctaaaacaaa tatctgtgtt tttcaagaag ctaaaaatga aagactccaa
     7741 atgaatgcaa aattagtggt actctatatt ctcaaaatag catattctct ggatctcaca
     7801 gaagctaatt caggacatca aaattatttc aaggctgaat tttccctggg ccttcttaat
     7861 atgtaagagt gtatttcctc actgctgtct accaaccatt caaaaatggg gaggtttatg
     7921 attttttttc attgaagatc tggaaacaag agtttaaagg acttttgtta gaaatctccc
     7981 tatgctctga atcagatgag aaagcacccc tccccaaagg agcaggagtt caaaggcaac
     8041 agaggcagaa ccagcatgag cagtgaatag actgagtggt tgaacagctt aggagaaccc
     8101 caggtgcacc ctgtgagcca ggcacagaca aaggccgtgt ccagcagagc atactgcaga
     8161 gagaggccaa caggtaccgg ctgcaactgt accccagtta aggtagtgtc ggaagacaca
     8221 ctaacctcta cagtaagatc tgttcccttt ttatctctcc atttattctt ttctctcatc
     8281 tccttgctgc accctcctct tcaggggaaa atgttaatag tcctcttaca tttcatgctt
     8341 ataaacaatg tctgctttga actctttttc tgtgatttca agcactttaa aaaagggggg
     8401 aaagaatcat ttaaccttgt tgagtttgat ttattcaacc aacaatagtt tctgaagtgc
     8461 tcttcctggt gagccacctg atcctgatat aaatgaggaa aagcaaccag gcatcccact
     8521 cgtttttggc caaaaacaaa gggcatcttt tttagatggt gttttagtga gtgtgacccc
     8581 tgagaattag ctgatagatc tcaacatgta tataggcatg gagactcaca tctataatcc
     8641 cagcatttat agctaagaaa tcaggaattt aaggccagcc tcagctacag atgagttcaa
     8701 agccagcctg ggcaataata agactccatc tcaaaagaac aagcaaaaag gaatctcagg
     8761 ccatcaagat gtctctgcag gtaaaagcac ttgccatgta aacttgacca tgtaaaccca
     8821 atccatggat cctacctata gtggaaggaa aaaactgact cccaagagtt gtcctctgat
     8881 cctctacaca cacacacaca cacacacaca cacacacaca cacacacaca ccataaataa
     8941 aaattagaat gaatccccac cctttctcca tcctagactt gctatatgtg accctggcca
     9001 tgccctggaa cttctgcctg tccttctcga gctgctttac ctactgaaaa gacaattgcg
     9061 agcacagtgg attcatgatt gtggaacact ttgaaaccca aatataaatt tcaaaaccaa
     9121 ctgacttggc ttgaggctgt aagctgcatt ttaaaagtac tatgtaaaca atatagccat
     9181 gcacatggag agttataggg cattgctgaa ctactgctga attatgaatc agagagacct
     9241 ccagggagct aggctgtcaa cacagggaag cagaacccag aggaaaacta gagaaactgg
     9301 aaatttaatt gtaaatctct gaatcctcac ctgggcatga cttgtggctc acaatataca
     9361 cacagtttca gatagatagt aaatataatt agactggatt ataaattaga cacacacaca
     9421 cacacacaca cacacacaca cacacacaca cacacaccat aaaaggtatt ttctagcctg
     9481 gagaccctgt gcctcaatat tacagtcact ctccatgata aatgtcagga attttcaaag
     9541 aatttttttt caccacagcg tttttatttt ctctctctca tgtagaatag tctacaaaac
     9601 ctctgtcaat aaaacagaga agcgacatcc aaaagccgag taaagactgg aagaaggtaa
     9661 taaagataga agtgtgcaca ggtgtgttca cacctaacac ccgctcacac atttctgttc
     9721 cagatgaaaa tgtgctgtgg gaacacatct gctaagagtt tgccccattt cccaggctcg
     9781 gatgacttct agtacacaag tgctggcttc tgagatggct gtgaaggtgt ggaagttcct
     9841 ctcgaggagg ccaagaaact gttcttgatg ttgccaattc tcagttttgc tttgccaggt
     9901 tctttttggt ttttaagccc atggtgactg tggaggttag cgctgaggaa agctgggcta
     9961 agtattcttc ctgtgagtca gttaggactc catccctgtg aaacaacgcg aaacttcact
    10021 ctctaaaagc aacagcatgt aaactagaat gaaagaagga aattatgtat gtatgactat
    10081 tattcttttg tgaatgtcct tcatttacct cctaaagtta tattagaaac agattgataa
    10141 ataaaagatt caaaatagtt ttaattatcc taaaa
//
