LOCUS       NM_019329               4126 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Rattus norvegicus contactin 3 (Cntn3), mRNA.
ACCESSION   NM_019329 XM_346711
VERSION     NM_019329.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4126)
  AUTHORS   Yoshihara,Y., Kawasaki,M., Tani,A., Tamada,A., Nagata,S.,
            Kagamiyama,H. and Mori,K.
  TITLE     BIG-1: a new TAG-1/F3-related member of the immunoglobulin
            superfamily with neurite outgrowth-promoting activity
  JOURNAL   Neuron 13 (2), 415-426 (1994)
   PUBMED   8060619
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from U11031.1.
            
            On Aug 31, 2012 this sequence version replaced NM_019329.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U11031.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4126              U11031.1           2-4127
FEATURES             Location/Qualifiers
     source          1..4126
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="W"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34-q41"
     gene            1..4126
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /note="contactin 3"
                     /db_xref="GeneID:54279"
                     /db_xref="RGD:3253"
     exon            1..104
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..3136
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /note="brain-derived immunoglobulin superfamily protein 1;
                     Plasmacytoma-associated neuronal glycoprotein (neural cell
                     adhesion molecule BIG-1); contactin 3 (plasmacytoma
                     associated)"
                     /codon_start=1
                     /product="contactin-3 precursor"
                     /protein_id="NP_062202.1"
                     /db_xref="GeneID:54279"
                     /db_xref="RGD:3253"
                     /translation="MMLSWKQLILLSFIGCLAGELLLQGPVFVKEPSNSIFPVGSEDK
                     KITLNCEARGNPSPHYRWQLNGSDIDTSLDHRYKLNGGNLIVINPNRNWDTGSYQCFA
                     TNSLGTIVSREAKLQFAYLENFKSRMRSRVSVREGQGVVLLCGPPPHSGELSYAWVFN
                     EYPSFVEEDSRRFVSQETGHLYIAKVEPSDVGNYTCVVTSTVTNARVLGSPTPLVLRS
                     DGVMGEYEPKIELQFPETLPAAKGSTVKLECFALGNPVPQINWRRSDGMPFPTKIKLR
                     KFNGVLEIPNFQQEDTGSYECIAENSRGKNVARGRLTYYAKPYWVQLLKDVETAVEDS
                     LYWECRASGKPKPSYRWLKNGDALVLEERIQIENGALTIANLNVSDSGMFQCIAENKH
                     GLIYSSAELKVLASAPDFSRNPMKKMIQVQVGSLVILDCKPSASPRALSFWKKGDTVV
                     REQARISLLNDGGLKIMNVTKADAGIYTCIAENQFGKANGTTQLVVTEPTRIILAPSN
                     MDVAVGESIILPCQVQHDPLLDIMFAWYFNGTLTDFKKDGSHFEKVGGSSSGDLMIRN
                     IQLKHSGKYVCMVQTGVDSVSSAAELIVRGSPGPPENVKVDEITDTTAQLSWTEGTDS
                     HSPVISYAVQARTPFSVGWQNVRTVPEAIDGKTRTATVVELNPWVEYEFRVVASNKIG
                     GGEPSLPSEKVRTEEAAPEVAPSEVSGGGGSRSELVITWDPVPEELQNGGGFGYVVAF
                     RPLGVTTWIQTVVTSPDNPRYVFRNESIVPFSPYEVKVGVYNNKGEGPFSPVTTVFSA
                     EEEPTVAPSHISAHSLSSSEIEVSWNTIPWKSSNGRLLGYEVRYWNNGGEEESSSKVK
                     VAGNQTSAVLRGLKSNLAYYTAVRAYNTAGAGPFSATVNATTKKTPPSQPPGNVVWNA
                     TDTKVLLNWEQVKALENESEVTGYKVFYRTSSQNNVQVLNTNKTSAELLLPIKEDYII
                     EVKATTDGGDGTSSEQIRIPRITSMDARGSTSAISDIHPVSGYISVLLFFIVNALW"
     exon            105..231
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            232..407
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            408..503
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            504..707
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            708..810
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            811..995
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            996..1132
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1262
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            1263..1413
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1541
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..1717
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            1718..1835
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            1836..1994
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            1995..2144
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            2145..2215
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            2216..2450
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            2451..2566
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            2567..2753
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            2754..2866
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            2867..3035
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
     exon            3036..4126
                     /gene="Cntn3"
                     /gene_synonym="BIG-1; Pang"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tattcatcag agactagaca agagttactc ttgcttttgc caattaaaga tgatgttgtc
       61 atggaaacag ttgatcctgc tttcattcat tggctgcctg gcaggtgagc ttcttttgca
      121 aggccccgtg tttgtcaaag agcccagcaa cagtattttc cctgttggct cggaggataa
      181 aaaaataaca ttaaattgtg aagcaagagg caacccttct cctcattaca ggtggcagct
      241 gaatggcagt gacattgata caagtctgga ccatcgttac aaactgaacg gaggaaatct
      301 catagttatt aaccctaaca gaaattggga tactggaagt taccagtgtt ttgcaacaaa
      361 ttctcttgga acaatagtca gcagagaagc taaactccaa tttgcctatc ttgaaaattt
      421 taagagcaga atgagaagca gagtgtcagt tcgtgaaggc cagggagtgg tacttctctg
      481 tggaccccca ccacactccg gggaactttc atatgcttgg gtcttcaatg agtatccatc
      541 attcgttgaa gaagacagtc gaagatttgt ctctcaagag acaggacacc tctacatagc
      601 taaagtggag ccatctgatg tgggaaatta cacatgcgtg gtgaccagca ctgtgacaaa
      661 tgccagagta ttgggctccc caaccccttt ggtgctacgc tctgatggtg tcatgggtga
      721 atatgaacct aaaatagaac tccagtttcc agaaactctt ccagcagcta aaggttcaac
      781 tgtgaagttg gaatgcttcg ccctagggaa ccctgttcct cagattaatt ggagaagaag
      841 tgatgggatg ccgtttccca ccaaaattaa gctgaggaag ttcaatggtg tgctcgaaat
      901 tccaaacttc caacaggaag atacaggctc ctatgagtgc attgctgaaa attcacgagg
      961 aaagaatgtg gcgagaggac ggctcactta ctatgcaaaa ccttattggg ttcaactctt
     1021 aaaagatgtg gaaactgctg tggaggacag tctttattgg gaatgccggg caagtgggaa
     1081 gcctaaaccc tcctatcgat ggctgaaaaa tggagatgcc ttagtactag aggagagaat
     1141 acagatagaa aatggtgccc ttacaatagc caacctcaat gtgagtgact ctggaatgtt
     1201 ccagtgtata gcagagaaca agcatggcct catctactcc agtgctgagc tcaaagtatt
     1261 agcttctgct ccagattttt caaggaaccc tatgaaaaaa atgattcagg tgcaggtggg
     1321 cagcctggtg atcttggatt gtaaacccag cgcctctcca agggcacttt ctttctggaa
     1381 gaagggagac acggtggtgc gggagcaggc aaggatttct cttttaaatg atggaggact
     1441 caaaattatg aacgtgacca aggctgatgc tggaatctac acctgcatag cagaaaacca
     1501 gtttggcaaa gcgaatggca ccacccagtt ggttgtgaca gaaccaacaa gaataatttt
     1561 ggcaccttct aacatggatg ttgccgttgg tgagagcatc attttacctt gccaggttca
     1621 acatgacccc ctattagaca taatgtttgc ctggtatttc aatggaactc ttacagactt
     1681 taagaaagat ggatcgcact ttgagaaagt tggtgggagt tcgtcaggtg atttaatgat
     1741 cagaaacatt caactgaaac acagtggaaa gtatgtatgt atggtgcaga caggggtgga
     1801 cagcgtttca tctgcagctg agctcatagt gagaggttca cctggaccac cggaaaacgt
     1861 gaaagtagat gaaattacag acacaacagc ccagctctct tggacggaag gcaccgacag
     1921 tcacagccca gttatatcgt atgcagtcca ggctaggaca cctttctctg tgggctggca
     1981 aaatgtcaga acagtacctg aggccattga tggaaaaaca cgaacagcta ctgttgtgga
     2041 gttaaaccca tgggtggaat atgaatttcg cgttgtagcc agtaacaaaa tcggaggcgg
     2101 agaacccagt ttaccctcag aaaaagtaag gactgaagag gcagctccag aagtcgcacc
     2161 ttctgaggtg agcggaggag gtggaagccg atctgagcta gtgataacct gggatccagt
     2221 ccctgaagaa ctccagaatg gaggaggttt tgggtatgtg gttgcttttc gcccacttgg
     2281 ggttaccacc tggatccaga cagtggtgac atccccagat aatccaagat acgtctttag
     2341 gaatgaaagc atcgtgcctt tttcgccata tgaagttaaa gtgggcgttt acaataacaa
     2401 aggtgaagga ccctttagcc cagtcacaac tgtgttctcc gcagaggaag agcctacagt
     2461 cgccccatct cacatctctg cacatagtct gtcctcctca gaaattgaag tttcatggaa
     2521 cacaattccc tggaagtcga gcaatggacg tttacttggc tatgaggtgc ggtactggaa
     2581 caatggagga gaagaagaat catccagcaa agtgaaagtg gcaggaaatc agacatcagc
     2641 tgtgctccga ggcctgaaaa gcaacctggc atattacaca gccgtccggg cttacaacac
     2701 cgcaggcgct ggtcccttca gtgccacagt taacgcgacc accaagaaaa cccctcccag
     2761 tcagccacca ggaaatgttg tttggaatgc tacagacact aaagtgctgc ttaactggga
     2821 acaagtgaaa gccttggaga atgaatcaga agtaacaggc tacaaggttt tctataggac
     2881 tagcagtcaa aataatgtgc aagtactgaa cacaaacaaa acttcagctg aactgttgct
     2941 gcctatcaag gaagactaca tcattgaagt caaggccacc acagatggag gggacggcac
     3001 cagtagtgag cagatcagga ttccaagaat aaccagtatg gatgcaagag gatccacttc
     3061 agccatttct gacatccacc ctgtgtcagg ttacatatcc gtcctactgt tctttattgt
     3121 aaatgctttg tggtgatagg gctttttttt attatttatt ggaaagttaa ttggttaccc
     3181 ccccaaaagt gctttctaaa acagtgatta tgcatgtttt tacagctctg tgtttttaaa
     3241 tttctacttc attataggta aaatatgaat ataataaaaa cagtaaatcc ttttagagga
     3301 atctgagatg ccttaatatt tgcttggtaa accaaaggaa cttgcaaatt acaaactgca
     3361 aacgtttttg atagaaatat tcttatgttg tgagtttaat cacttgccta tgtgtgaggc
     3421 acatacaaac acaggataca taaaaacaca gtgcacatat gatgtatgga aacacctagt
     3481 acatatacag tacatacaac acacaatgca caagcacata catacataca cacaaacaca
     3541 aacagacttt ttctatacta aaaaccttat ttattacaaa tgttcttttc ccatgattac
     3601 aacatcacct atcattttta aattactaat ctgatccctc agaggaaaca tgcacttaaa
     3661 ctgttattcc ggaagggagc agcctggaag ggagtattgt tagaaaatgc tactctgagt
     3721 ttgggaaagt gacacttgca tcaatgtgct actgtatggc tgtgagattt cctttgtcac
     3781 ttctttctct catctttcac ttatttattc tataaagtga ggtgacaata tttctcctgt
     3841 cgccttttac tgcaagaatt tattgttgaa aacaaagaaa gaaggatgaa ggcatggttt
     3901 cttcccctat gcagtgtggg tgtgcagaat cttacatgaa cctcctaagg taaacacaaa
     3961 acaggcactt ttctgaagtg tgctggcatt gcacgttctc cttaggattg tctgtctttt
     4021 tccgaagatg ggaattgaac cccagtgaag actgtgacag tgttcccttt tgtcggtgtt
     4081 tacaaaaata agatgaaaca tggaaatgaa tacattttat ccttcc
//
