LOCUS       NM_001400959            3508 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus canopy FGF signaling regulator 1 (Cnpy1), mRNA.
ACCESSION   NM_001400959
VERSION     NM_001400959.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3508)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.21004.1,
                                           SRR26643289.12018.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-619               JAXUCZ010000004.1  7916169-7916787
            620-823             JAXUCZ010000004.1  7916993-7917196
            824-920             JAXUCZ010000004.1  7918929-7919025
            921-3508            JAXUCZ010000004.1  7922679-7925266
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..3508
                     /gene="Cnpy1"
                     /note="canopy FGF signaling regulator 1"
                     /db_xref="GeneID:685001"
                     /db_xref="RGD:1583296"
     exon            1..619
                     /gene="Cnpy1"
                     /inference="alignment:Splign:2.1.0"
     exon            620..823
                     /gene="Cnpy1"
                     /inference="alignment:Splign:2.1.0"
     CDS             680..964
                     /gene="Cnpy1"
                     /note="canopy 1 homolog; rCG56756-like"
                     /codon_start=1
                     /product="protein canopy homolog 1"
                     /protein_id="NP_001387888.1"
                     /db_xref="GeneID:685001"
                     /db_xref="RGD:1583296"
                     /translation="MNDYQLEDDPVTKQKYFRRYAPRKGDKIYKEYKKFFFYSDAYRP
                     LKFACEAIIEKYEDEIFELIAQEAHHLADMLCSEKSDLCGTPTNSPEPEV"
     exon            824..920
                     /gene="Cnpy1"
                     /inference="alignment:Splign:2.1.0"
     exon            921..3508
                     /gene="Cnpy1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgcacagt cgttggcacc ggaagggttc acactgcgtg tgaaagggga caaagggggc
       61 tggatatatc aacactgcag aaaccgagtt catttgtcat gcagcccctt tcaacgcagt
      121 tgtcatgcaa acttccttct ttgatcagca gagggtggag agagagaaag cacgcaaagc
      181 ctagggccgg ctgggcgccc ttggcggctc cacgcccctt ccggaaggag ccgcggggac
      241 ctggcctcct gcaccttgac ccgtctagac gccgcacgag gttttgtctc ggtttccaag
      301 ggcgcggggt gctctttgac ccgcgcccgg ggcggaggtg gtggcatgga gcccagcgca
      361 ccctggcagg tcccggaggg agaggggcgc ccgggacgcg cgccagctgt tcccagagca
      421 agccggggcc aatgaggggc gctccggggc ccgctgcccg tgaccacctc gttgtggacc
      481 ccgcttagct tcctcgagaa gtccggaagg cgagggggca gtgctacgca ggattcccca
      541 cagaaccgat gcgctctcga tgcccctttc tcctcccatt ttctgtgttt catcctctat
      601 tcaacaactt ttaaaaatgg ttccactggc tcagtccgag gcgttcctca tcgacctttt
      661 ggataaagtg tgtgtgcgaa tgaacgacta tcagctggag gacgacccag tgaccaaaca
      721 gaagtatttc aggagatatg ctccgagaaa gggagacaaa atatacaaag aatataaaaa
      781 gttcttcttt tattccgatg cctacagacc tttgaaattc gcgtgcgaag ccattattga
      841 aaagtatgag gatgaaatat tcgaacttat cgcccaggag gcacaccatc tagctgatat
      901 gctgtgcagt gaaaaatcag atctgtgtgg cactcctaca aacagtcctg aacccgaggt
      961 gtgagaggag tggagtcagc ctgacaggtc actgtgcacc tccacatcgt gtgactgccg
     1021 tgataaggaa gttcatctcc tgtctgctgt acttgtctca tgcgtgatat tggtttgaaa
     1081 atctcttgct tggcatcgtg acaaacccca agtcttgtct taggtgaaga gaagtttata
     1141 aaacagaata cccctttgca tatttgtatg gaagctgggt tagcaataga gcattaaatc
     1201 tagccatggg aagagggtga agttatttct tgaagtcagt agggaattaa gggtgggtcc
     1261 aagcaaatgc gcctgacatg tccatataca gtttgcagtt tcagaagaac tcagtttgat
     1321 ttctcaaatt cttgatcagc cacaattcaa ggcattcagt tgcaactaat gccatggatt
     1381 tgctattctg gaaggttctg tgtggtgctt ttaaagccac ccctctcaac taggaatggg
     1441 acttacacat ctggaaactc ttatatttta gaactttatt cctaagatta aataggacaa
     1501 ataaaagagt gaatacttct cacagtggtt tcctggccat gccctgagtt cagatgattc
     1561 tgaagggtgt ctcatagtgg gtttcaaaag atgcgacact cagcacattt ttgtcttgct
     1621 tcagtctctc ttggttggtt tttccctcat tgatcatagt gtgtagtttt tcctactggc
     1681 tgacttgtct ctcttctatg ggacttttat ttatgtattt attgttggat gtggagggaa
     1741 attcaccttt accacactta ctgtaacaaa atgtaataac agtttctcct gggtgttctc
     1801 attgtctctg ctaaatttgt attcagtgga attgaacttt aattattcag catgtgtggg
     1861 tacaggttac acctgtttaa ttaaagaaat tgtcaccatt gtcattgaaa tttgcatgag
     1921 taataggcaa acattttacc agaagagcta aaatggttgt ttataaaacc atccagaaat
     1981 gacactattt agattattca ttggacacct tggccagaat aattcttata tttgctagat
     2041 tttaccaaaa taagaaagat ttctattttt tccttcctct tagtcttaag tcttaatgcc
     2101 acttgttttc tggaaatctg agaaaacgtg tgctttagca atgtgtctgt ggtcagttgt
     2161 aggccctctg cgaccctgag attctgtgct ccaaacgaac aaggaagagg agatacacgg
     2221 tcaggtgatg cttcctccca gcagggaaga aacaaaaaag ggagggggag acgggtccct
     2281 gcaccttatt tttgtgatcc ataagattaa ctcagcattt gaggtaggaa gtctttttag
     2341 cattgcctta cttgggcttt gttaggaaat gcacactagg gtcccatttc ttaagatttg
     2401 tccttctggg aacaaagctg agaaggccaa ctgtaaggta gttactgatc tcagactgct
     2461 tttcgcctgc cgggacctct ggggcagaca gatccgcaga cactctgctt tccaaaccgt
     2521 tctggatttc tcaccaaaca gggtcttaaa tctgaccagt gttttgggta tctcatgact
     2581 catacttttt tgtaattctt tttcatatca agtttgctga gctcatgtaa atgaaggtag
     2641 ctactgagtt gctgattaaa tcttggttcg attgagaatt acccagagcc acggtctctc
     2701 tgcctgcctc ctgtgggatg cctgcttttc tgggaagtag ctataggaga gaggaagctg
     2761 tgtgggccac cattcccctg actttaaaat gacaccaaat aaaaagtaag atgaaaagtc
     2821 agagagaacc actcaccact aaaagcaagc aaatgaaaga gatgcctagg ccgcaagctg
     2881 acattttctt aaaattaaca aaaatcaacc cagatctgag tcaaaaaatt aataataaca
     2941 acaataacaa cagcattaag tttcctggga agacagggtg agtaataaaa gtcaggaaga
     3001 ggaaaaatgt gttagaggct gcagggaaac cattcttgag cctgtaatcg cacaatccac
     3061 acaccaaact ggccaaagca ggatgcttac cttgttctgc aagttgctgt ttgcttagaa
     3121 ctgctgaacc cacttaactg gagagcacag agtagaacgg agcccaagtc cctacaggaa
     3181 acatccaccc ttcccgaggc aagtcctaag acagccagag caggggctct gacacacgct
     3241 tcttggctcc cgcagtcttt attcttacac atatttccat gtaacgataa caaaagttta
     3301 actgtgtatc actcttaaaa ttcagattac ggtaggatag tgggggaagt taatcttata
     3361 catgtttgtc agtctgctct taaacttgat acaaagttgt gagctgatct tagaaatgtt
     3421 aaaggccaat cagtagaatg tggcaccatt tggtgcctac atacagtgaa gaacattaaa
     3481 ttattgcaat aaaactatac ttgtaaga
//
