LOCUS       NM_199112               2235 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus cyclin Pas1/PHO80 domain containing 1 (Cnppd1),
            mRNA.
ACCESSION   NM_199112 XM_237301
VERSION     NM_199112.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2235)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC061750.1.
            
            On Jan 1, 2004 this sequence version replaced XM_237301.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC061750.1, SRR8487227.21276.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q33"
     gene            1..2235
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /note="cyclin Pas1/PHO80 domain containing 1"
                     /db_xref="GeneID:316530"
                     /db_xref="RGD:735175"
     exon            1..294
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
     exon            295..382
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
     CDS             314..1540
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /note="hypothetical protein MGC:72616"
                     /codon_start=1
                     /product="protein CNPPD1"
                     /protein_id="NP_954543.1"
                     /db_xref="GeneID:316530"
                     /db_xref="RGD:735175"
                     /translation="MDLAGLLLDEEGTFSLSGFQDFTFLPGHQKLSARIRRRLYYGWD
                     LETDCSLEELSSPVADITVELLQKAAPSPIRRLQKKYVAHVSREACISPCAMMLALVY
                     IERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEGEEEEVFNDEWGAAGGVAVPTLN
                     ALERSFLSAMDWRLYTDPREIFEVLSWLESCVAEQQGRRRGWYTYTDLCVLLEQPMWQ
                     LSLGSLCQRLVKLSCLLAVAYVSSVALAVASMAVIHQSLGLSSSPSPSPPELTLVPKN
                     LLQPCIPAPVPQCLTNVSSCLEDSVELPSLWGSLLDPLTPPLMPPPDPPAPPTPFHKC
                     PFCQKFQRNPPNCRACHQPNRTVSIGPIHPFYHTHGLAPPWLWSPVAPPFLQPQQCSL
                     FSVMKLARLTSVIFPG"
     exon            383..491
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
     exon            492..573
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
     exon            574..694
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
     exon            695..823
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
     exon            824..885
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
     exon            886..1003
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..2214
                     /gene="Cnppd1"
                     /gene_synonym="RGD735175"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caacttcgaa aagttgcttc ttccttcttc gagcgtcggc cctctttctt ccccaaatct
       61 ttcagcggca aattgggtgg aaggcgtgtt tgaaaataaa acattccagg cgctgtttac
      121 tttggggaga cttgtttaac atcgtacatt gaggcttcat atcttttgag atcatttaat
      181 tgctggagta accctacaaa atacagtatg tattcgagtt ttacactttc aaacttctaa
      241 ggggcgtaaa ggttcaacag attcccttcc accttgttca cagttctccc acggggtggc
      301 agctgacggg gcgatggacc tggctgggct cctactggac gaagaaggca ccttctccct
      361 ctctggtttc caggacttca cgtttcttcc aggacaccaa aagctgagcg ctcgaatccg
      421 aaggagactc tattatggct gggacttgga gacagactgc agcctggagg agctctccag
      481 ccctgtggca gacattactg tggaacttct tcagaaggca gcacccagtc ctattcgccg
      541 actccagaaa aaatatgtag cccacgtgtc ccgggaggca tgcatctccc cttgtgctat
      601 gatgttagct ctggtgtaca ttgagcgact ccggcaccga aacccagatt acctgcagca
      661 cgtgtcgtct tctgatttgt ttctgatctc catgatggtg gccagtaaat acctttatga
      721 tgaaggggag gaagaggagg tcttcaatga tgaatgggga gctgctgggg gagttgctgt
      781 gcctactctc aatgccttgg aaaggagctt tctgagtgcc atggactggc gtctctacac
      841 tgatcctcgg gagatctttg aggtgctgag ttggctggag agttgtgtgg ctgagcagca
      901 aggacggcgg cggggctggt acacctacac agacctgtgt gtgctgctgg agcagccaat
      961 gtggcagctg tctctgggct ccctctgcca gcggctggta aagctgtcct gcctgttagc
     1021 cgtggcatat gtgagcagcg tggccctggc tgtggcatcc atggctgtaa tacaccagtc
     1081 cttggggctg tcctccagcc cctcaccaag tcctcctgaa ctcacactgg tccccaagaa
     1141 cctcttgcag ccctgcatac ctgcccctgt gccacagtgc ctgactaatg tctccagctg
     1201 cctggaagac agtgtagagt tgccgtcgct ctggggcagt cttctggacc cattgacacc
     1261 ccctctgatg cctcctccag accctcctgc cccacctact cctttccaca aatgcccctt
     1321 ttgccagaag ttccagagaa accccccaaa ttgccgtgcc tgtcaccagc ctaaccgtac
     1381 ggtgtctatt ggtcctatcc acccctttta ccatacccat ggcctggccc caccctggct
     1441 ctggagccca gtggcccctc cattcctcca gccccagcag tgttctcttt ttagtgtcat
     1501 gaagctggct cgcctcacgt ctgttatttt cccaggttag gtagggctcg gaggagtgca
     1561 ttagagggtt tgggagtcct tgagaacctg gaagaggaaa acttgattta gatttttgct
     1621 acctctctgg gcccttggct agtcccctgt cctgctgggt aggaacataa gggattatgg
     1681 gggcagcaca aggtcactca ctctcctaga cctcagaggc tggctaatag gctaggacac
     1741 cagtggtgcc tgggacagtg tcagctcagt gaccagaggc atgccacaaa tgacagagaa
     1801 tcacctatct ctttgccttc acaagcccag gagggtagat ttctgctttg aagtttccag
     1861 agatgggaag gtaaatggga gttgtgggaa gtgagtaagg agagtgggaa agcatcgatg
     1921 tgaatctctg atgtgtgagt caggaaaacc aagacgagag atgctgaggg acagaaggct
     1981 ccccaaggcg ggaaacttgc cacacctgtc ccttggacga atttgtcata gccaagaatt
     2041 gctgggtcct ttaaccttgt ccctttgtct tccaaccata gcatcctgct ccaaggcttc
     2101 ccactctgcc tttttgggtg ttctcttcac aggcctctct gggcgccact gctttgtatc
     2161 tgggtttttc atgcttttat agaactgagg tttcaataaa cagtttctgt tgcaaaaaaa
     2221 aaaaaaaaaa aaaaa
//
