LOCUS       XM_039083354            3356 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCR4-NOT transcription complex subunit
            9 (Cnot9), transcript variant X1, mRNA.
ACCESSION   XM_039083354
VERSION     XM_039083354.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3356
                     /gene="Cnot9"
                     /gene_synonym="Rqcd1"
                     /note="CCR4-NOT transcription complex subunit 9; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 42 ESTs, 5 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 153 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301513"
                     /db_xref="RGD:1311495"
     CDS             412..1314
                     /gene="Cnot9"
                     /gene_synonym="Rqcd1"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 9 isoform
                     X1"
                     /protein_id="XP_038939282.1"
                     /db_xref="GeneID:301513"
                     /db_xref="RGD:1311495"
                     /translation="MHSLATAAPVPTALAQVDREKIYQWINELSSPETRENALLELSK
                     KRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS
                     HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT
                     TEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVL
                     QLSKEPSARLLKHVVRCYLRLSDNPSRAREALRQCLPDQLKDTTFAQVLKDDTTTKRW
                     LAQLVKNLQEGQVTDPRGIPLPPQ"
ORIGIN      
        1 ttttcctctc gctcagcctg cttgagcatg cgcagttttt gtccttccaa gactgctggc
       61 cttttcccgc ccttctctgg ccttaggagg aaagtcagag ttcacgtttc ttaggggata
      121 tacttgcgat gccgggggga tacgaggacc agtagtttgc agacgtcatt ttgatcctga
      181 acctgaaggt tcaagggaca tactttggga ctatttgtta ggccgaggtc caggaggcgg
      241 gaaagggctg tgtgggcgga gggtcggagg tgagaggtca aagggctgcg aagagggagg
      301 agcgagccgg agacggatgg cggctcttca tcttcggctg cagagccact aaagctggga
      361 cgcgggtccg gcgcgtccag cggaagaagt agagcggccc ccgctcccaa catgcacagc
      421 ctggcaacgg cagcgcctgt gcctactgca ctggcccagg tggacagaga gaagatctat
      481 cagtggatca atgaactgtc cagtcctgaa acaagggaaa atgctttgct ggagctgagc
      541 aagaagcgag agtctgtccc tgaccttgcg cccatgctgt ggcattcatt cggtactatt
      601 gcagcacttt tacaggaaat tgtaaatatt tatccatcta tcaaccctcc aaccttgaca
      661 gcacaccaat ctaacagggt ttgcaatgct ctagcattgc tacagtgtgt ggcctcacac
      721 ccagagacca ggtcagcttt tcttgcagca cacatcccac tctttttgta cccctttttg
      781 cacacagtca gcaaaactcg tccctttgaa tatcttcggc tcaccagcct tggagttatt
      841 ggggccttgg ttaaaacaga tgagcaagaa gtaatcaact ttttattgac aacagaaatc
      901 atccctttgt gtttgcgcat catggaatct ggaagtgaac tgtctaaaac ggttgccaca
      961 ttcatcctcc agaagatcct cttagatgac actggtctgg cttatatatg tcagacatat
     1021 gagcgttttt cccatgttgc catgatcttg ggtaaaatgg tcctgcagct atccaaagaa
     1081 ccatctgccc gtctgctgaa gcatgtagta agatgttacc ttcgactctc agataatccc
     1141 agtagggcac gtgaagcact cagacagtgc ctccctgacc agctgaagga cacaaccttt
     1201 gcccaggtgc taaaagatga caccaccacc aaacgctggc ttgcacaact ggtgaagaac
     1261 ctgcaggagg gccaagtcac cgatccccgg ggaattcccc tgccccctca gtgatcctcg
     1321 acattccctc tcactactcc cctacgttgg ggagtaaggg tggaacctat gaggaaaaca
     1381 gctcaggttt tattgccgac tgggaataga caacctcaat gctgaactgt actggagaaa
     1441 aggggcaagg taccccactg aggtgtgtgg gctgactgga ggtcctggat ccccctactg
     1501 ctcccaggaa ttgggctcct gacagcagtc tgctaccaca gccccaggag ggtgtcaaca
     1561 ccagcaaatg ctgtatttgc agcatgccca agatgaccct gctccccaac ctctgcctag
     1621 ccactggtag agagaggaga ggtggtaatc acagtaacac tgtaggcatg gagagcacct
     1681 gggaccaaac catgtggctt ttttttaaaa aaaaaaaaac aaaaaacaaa aaactttgcc
     1741 ttcctggacg actcaaggtg tgtctcttaa ttctctctca cacagtattt gtttactttg
     1801 gatttttgtt tttaatctca aaagagagag atgtgtttaa tggacacaag ctgtagtttt
     1861 cagcaaaact ttgtcagttg gcactgttta cacgtctctt agctgcataa gctcaataaa
     1921 agttggtctg ggcattgcat cccctcgggc agaccgatgg cgctatcagg ctgttgggtg
     1981 gaatgggagg caggggaaga ggaaagcaaa gccaagcaaa aacactacca accattcccc
     2041 tctgcccctg ttgtttccct cgcaagcctg gctgctgtga ggacattcac tttggctctg
     2101 gcttcggctg ctagcccacc caaatctcag cgcttgcccc tttcctacca cttagactta
     2161 aagcaggcgt cttaatttac ccagccttcc ttagagagtt gtactggggt ggagggaggc
     2221 agttcttcag gttcaagtct tcacaggtag tttccaggtg tcttctcaaa tggaacaagc
     2281 acctagatcc aaatggggcc ctgaccccgt tcttctcgtg tgggtttcag tagtgccatc
     2341 tcctcatgat tatacttgaa gcagtattag ctgaatgagt tttttcagag ttaaacagct
     2401 gcactctgct gtctcagtcc cctctccctt taacactttc tttggtctat ggaaactaca
     2461 gggctaccac tggaatgttt tttacttgtt gatagtgtca gagttccctt tccatctcca
     2521 tgggcttgac ttaacctgtt actgtaaact gcctttctga gatccttcca ctgtcaacct
     2581 ttgttttctc atcctcatcc caaagatggg gttattaatc caactctaga gagagcccaa
     2641 atcttcagcc catgtctcac acacttgaag gtatctttat taaatttgaa gagactataa
     2701 agggacagat gctcatagaa acctttgcag aggcagttgt gccaaaccaa gggctcttta
     2761 agctgacttt cacacaggga gccagccttg tttgttggct tctgtcttca gagacaagaa
     2821 agtgctaatt aagtaaccta gatttaggga gggtagaata agcatttatt cccctgcctt
     2881 ccaaattgaa gaggagacca tggcctcaag gctgaagaag gaaagtctta gaaagcaaag
     2941 aacagcattg cctgataaac gtctcgactc actctgcaac tgtgatctgg aaagttcact
     3001 agggtaccct gatttttgaa atccgccttc ctgatgagct gaagtctctc attccgcctc
     3061 actggggaag cagctgagac ttggagcctt gctccctggg acattgtctc catctttcgg
     3121 tgcactggcc atgttactgt gccaatagtg tcttaattca tgtcccatct gtcctcagct
     3181 ggccttggac ctacatagga gttgaatgag gaggagtgca acgggtctta attcctgtgg
     3241 ttggtcctga tgttatatgt actatataaa gaggctcctc cctttatttt gtgttttcca
     3301 tccctcaccc tcaacaggat taaaataaaa catgctctgg ttttttaaaa aaaaaa
//
