LOCUS       XM_006236271            3288 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCR4-NOT transcription complex,
            subunit 4 (Cnot4), transcript variant X2, mRNA.
ACCESSION   XM_006236271
VERSION     XM_006236271.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006236271.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006236271.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3288
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3288
                     /gene="Cnot4"
                     /note="CCR4-NOT transcription complex, subunit 4; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 27 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     141 samples with support for all annotated introns"
                     /db_xref="GeneID:312227"
                     /db_xref="RGD:1310318"
     CDS             312..2231
                     /gene="Cnot4"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 4 isoform
                     X2"
                     /protein_id="XP_006236333.1"
                     /db_xref="GeneID:312227"
                     /db_xref="RGD:1310318"
                     /translation="MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHR
                     IRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLAS
                     VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAY
                     VTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGD
                     EAASFTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKP
                     SDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLF
                     SDNFRHPNPIPSGLPPFPSSPQTPSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGS
                     SKQPEDDLGFDPFDVTRKALADLIEKELSVQDQPSLSSTSLQNSSSHTTSAKGPGSGF
                     LHPAAPANANSLNSTFSVLPQRFPQFQQHRAVYNSFGFPGQAARYPWMAFPRNSIMHL
                     NHTANPTSNSNFLDLNLPPQHNTGLGGIPIAGIPASSGNTLDSIQDDNPPHWLKSLQA
                     LTEVDGPSAASPQPHHSAPFSTQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPS
                     KTPTDLLQSSTLDRH"
ORIGIN      
        1 aggccggagg agtcttaccc taatgtaaga tggtggcccg tctagccgtg gaacccaccg
       61 aaagctgaga gtctctctct cagccgtaaa ggtcggactc actgaagcag tcaggcccgg
      121 ttctgaagag ttttttcgcc gactctcgtt cattggtctc ctgtgaggac tcggcaacgc
      181 gtggagtcgg ctaagagaaa agcgaggcaa ggcaggcggg tcttcagagt tctatatatt
      241 agctctcagt gctgaattac cttctccctt aaattattat aaacttttgc tgctgtcaaa
      301 taaacgtgaa aatgtctcgc agtcctgatg caaaggaaga ccctgtggaa tgccctcttt
      361 gcatggagcc cttggaaata gacgatatta actttttccc ttgcacctgt ggctaccaga
      421 tttgccgatt ttgttggcat cgaatccgca ctgatgagaa tgggctttgt cctgcatgta
      481 gaaagccata tccagaagac ccagcagttt ataaaccact ttcccaggaa gaattgcaaa
      541 ggataaagaa tgagaaaaaa cagaaacaaa atgagagaaa acagaaaatc tcagaaaatc
      601 gaaaacattt ggctagtgta cgtgttgtac aaaaaaacct tgtatttgtc gtaggtctgt
      661 cacagcgcct agcagaccca gaagttttaa aacgaccaga gtattttggg aagtttggta
      721 aaatacataa agttgtcatc aataatagca catcatatgc aggctcacag ggtccgagtg
      781 ccagtgctta tgtaacctat atccggtcag aagatgctct cagagcaata cagtgtgtca
      841 acaatgtggt ggtagatggc aggacactaa aggcatcctt aggcacaaca aagtactgca
      901 gctacttcct gaagaacatg cagtgcccga agcccgactg catgtatctg cacgaactgg
      961 gggatgaggc agccagcttc accaaggagg aaatgcaggc gggtaagcac caagagtatg
     1021 aacagaagct cctccaagaa ttatataaat taaatcccaa ttttcttcag ttatctacgg
     1081 gttcagttga taagaataag aacaaagtga caccattaca aagccccatt gacaaacctt
     1141 cagattctct cagtataggg aatggtgata attcccaaca gatatctaac agtgatacgc
     1201 cttcaccacc acctggttta tcaaaatcca atcctgtcat ccccatcagt tcatccaatc
     1261 acagtgcaag gtctcctttt gaaggggcag taacagagtc acagtcatta ttctcagaca
     1321 atttccgcca ccccaaccct ataccaagtg ggcttcctcc ttttcccagc tctccacaga
     1381 cacccagtga ttggcctacc gctccagaac cacagagcct cttcacatca gaaacaatcc
     1441 cagtatcatc atctacagac tggcaagcag catttggctt tggttcttct aaacagccag
     1501 aggatgactt ggggtttgat cccttcgatg ttactcgaaa agccttagca gacctgattg
     1561 agaaggaact atccgtccaa gatcaacctt ccctttcttc cacgtctctt cagaactcct
     1621 cctcacacac tacaagcgcc aaaggtccag gctctggatt cctgcaccct gctgcacctg
     1681 ccaatgccaa ctctcttaat agtacctttt cagtcttgcc acagaggttc cctcagtttc
     1741 agcagcaccg agcagtttat aattcgttcg gttttccagg ccaggcagcc cgctatcctt
     1801 ggatggcctt tccacgcaat agcatcatgc acttgaacca cacagcaaac cccacctcaa
     1861 atagtaattt cttggacttg aatctcccgc cacagcacaa cacaggtctg ggagggatcc
     1921 ccatagcagg tattccagcc tcttcaggaa acactttaga ctctattcaa gacgacaatc
     1981 ctccacactg gctaaaatcc cttcaggccc tcacagaggt ggacggcccc agcgctgcct
     2041 cgccacagcc ccaccacagc gcccccttca gcacacagat ccctctgcac agagccagtt
     2101 ggaaccccta cccacctcct tcaaatcctt ccagcttcca ctccccaccc ccaggcttcc
     2161 agacagcctt cagacccccc agcaaaaccc ccacagacct gctacagagt tcaacactgg
     2221 accgccacta agcagagagg gattgaaaag ggcaggattt gtcccaccct gttctcccct
     2281 cagcccactc acagccccct tctcatctct tacgttctga agaatccagt tcctgatcgg
     2341 tttttttttc tccccgcccc cagatgcgat tcgatcacag cgtctttacc accttttctt
     2401 taattgtaaa aagtttccgt tggtccagca tctgagtgag tgacactgtt gaacctttct
     2461 gggggaaatt gcctttttaa gcagaggaaa aagaaaatca aaaggcggtc tcaatactta
     2521 gaaaattact gtttgtctgt cactcataat gccataatct gcttagcaga aaatgacagt
     2581 taatctatag gaaaggtcaa gtaaatgtgt tatcaactgc agacttgaga accaggctga
     2641 tttaaatgag attgctaaat tcttggggga aagcagtggt cctggcttcc gtcttgcatt
     2701 cagcttttca ctattgcagg gaaacgcttt caattttaaa ttctttattg aattgatggg
     2761 gaggactcaa ttgtgttgtt aagcaaaggg atttattgga agttgatgac aagataaatt
     2821 gatctgtagt agtaactggc ctattgctaa agagtttata aggagggaga agtaattttt
     2881 taaggagaaa aaattttggc tttagactta aattcagatg ttttaaaaga aaaaaatatt
     2941 cacaaattta atacctatcc ttatgagagc tgaattatac gtgatttcct cagtctttct
     3001 cctctgtcag aatcttttct tcctttgacc ataagtccat ctgacagggc attgtgagcc
     3061 agcactgccc tggggccacc gatcacccac aggagcaaat ctctgccctc cttgcctgcc
     3121 gcttttcctt aaccctgtag ttccggacgt ttgtgcagta ttgaaaagac aggagaaaag
     3181 aaaacaaacc tggttataac ctgatgctaa aactaaaaac aaggaaatgt acctctttct
     3241 tcagaattaa aactaaaatc ttaaataaaa cagaaaactt gatggtga
//
