LOCUS       NM_001108794            1744 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus CCR4-NOT transcription complex, subunit 11
            (Cnot11), mRNA.
ACCESSION   NM_001108794 XM_001058746 XM_343560
VERSION     NM_001108794.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Bawankar,P., Loh,B., Wohlbold,L., Schmidt,S. and Izaurralde,E.
  TITLE     NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT
            complex that docks onto the NOT1 N-terminal domain
  JOURNAL   RNA Biol 10 (2), 228-244 (2013)
   PUBMED   23303381
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Mauxion,F., Preve,B. and Seraphin,B.
  TITLE     C2ORF29/CNOT11 and CNOT10 form a new module of the CCR4-NOT complex
  JOURNAL   RNA Biol 10 (2), 267-276 (2013)
   PUBMED   23232451
REFERENCE   3  (bases 1 to 1744)
  AUTHORS   Lau,N.C., Kolkman,A., van Schaik,F.M., Mulder,K.W., Pijnappel,W.W.,
            Heck,A.J. and Timmers,H.T.
  TITLE     Human Ccr4-Not complexes contain variable deadenylase subunits
  JOURNAL   Biochem J 422 (3), 443-453 (2009)
   PUBMED   19558367
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158750.1.
            
            On Jan 27, 2008 this sequence version replaced NM_001108794.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158750.1, FQ233266.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132262, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q22"
     gene            1..1744
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /note="CCR4-NOT transcription complex, subunit 11"
                     /db_xref="GeneID:363221"
                     /db_xref="RGD:1560909"
     exon            1..568
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..1587
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /note="UPF0760 protein C2orf29 homolog"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 11"
                     /protein_id="NP_001102264.1"
                     /db_xref="GeneID:363221"
                     /db_xref="RGD:1560909"
                     /translation="MPGGGASTASGRLLSADPRGAREAAAFRSGPAGSSGGRGGAGGP
                     GSGSGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVL
                     VMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPD
                     RPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLA
                     LAERQSELPTQSKASFPSILSDPDPDSSNSAFDSSVASRITESLVSGPKPPIESHFRP
                     EFIRPPPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSS
                     PQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVL
                     VNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFL
                     QSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPSETKVSK"
     exon            569..733
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /inference="alignment:Splign:2.1.0"
     exon            734..886
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /inference="alignment:Splign:2.1.0"
     exon            887..1089
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /inference="alignment:Splign:2.1.0"
     exon            1090..1292
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1389
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1717
                     /gene="Cnot11"
                     /gene_synonym="RGD1560909"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggccgcggg gggacgcagc gagccggcgc cagggccttt cggccgggaa gcaggatagg
       61 cgggcgaggt tgatgcccgg tggcggggcg agcacggcgt ctggccggct tctctcagcg
      121 gatccaagag gggcgcggga ggcggcggcg ttccggagtg gcccggcggg ctcgagcgga
      181 ggccgaggcg gagcaggtgg ccccgggtca gggagtggag gccccgcggg caggatgagc
      241 ctgaccccga aggagctctc gagcctgctg agcatcatct cggaggaggc aggcggcggc
      301 agcaccttcg agggcctgtc caccgccttc caccactact ttagcaaggc cgaccacttc
      361 cgcctgggct cggtgctggt gatgctgctg cagcaaccgg acctgctgcc cagcgccgcg
      421 cagcgcctca cggcgctcta ccttctctgg gagatgtacc gcaccgagcc gctcgccgct
      481 aacccgttcg cagccagctt cgcgcacctg ctcaacccgg cgccgccagc ccggggcgga
      541 caggagcccg atcggccccc gctctcaggg tttctgcctc ctataactcc gccagaaaag
      601 ttctttcttt cccagctcat gctggcaccc ccgagggagc tgttcaaaaa gacacctcgc
      661 cagattgcac tcatggatgt cggaaacatg gggcagtctg tggatattag tggccttcag
      721 ttagccctgg cagagcgtca gtctgagctg ccaacccaga gcaaagctag cttcccaagc
      781 atcctcagtg acccggaccc ggactcctct aactctgcgt ttgacagctc agttgcctct
      841 cggatcacag agtctttagt cagcggaccc aagccgccca tcgaaagtca ttttcgccca
      901 gagttcatcc gcccaccacc acctctccac atctgtgagg atgaactggc ctggctcaat
      961 cctacagaac ccgagcatgc cattcaatgg gacaggtcaa tgtgtgtgaa gaatagcact
     1021 ggtgtggaga tcaagaggat catggcaaaa gccttcaaaa gccctctgtc ctctccccaa
     1081 caaacacagc tcctgggtga gttggaaaaa gatcccaaac ttgtttatca cattggcctt
     1141 actccagcga aacttccaga cctagtggaa aacaacccat tagtcgctat agaaatgctg
     1201 ctgaaactaa tgcagtcaag ccagatcacc gagtatttct cggtcctggt caatatggac
     1261 atgtccttac attcaatgga agttgtgaat cgactaacta cagctgtgga cctacctcct
     1321 gaatttattc acctatacat atccaattgc atttctactt gtgaacaaat taaggataaa
     1381 tatatgcaga atcgcttggt gcgtcttgtg tgtgtgtttc tccagtcttt gatccgtaac
     1441 aaaattatta acgtgcagga cttgtttata gaagtgcagg ccttctgcat tgaattcagc
     1501 aggatacggg aagctgcagg cctatttcgg ctgctgaaga cactggacac tggggaaacc
     1561 ccttctgaga ccaaagtatc aaaataatac ctcagcagaa ctgccccttc tatcgctcaa
     1621 ctgtatttgg attggttttt aaactgttgt aattcttgag tggattgctt gctttatcta
     1681 agaaatataa atgacacttt atttacttaa agcaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1741 aaaa
//
