LOCUS       XM_039081628            2535 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCR4-NOT transcription complex,
            subunit 10 (Cnot10), transcript variant X9, mRNA.
ACCESSION   XM_039081628
VERSION     XM_039081628.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081628.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2535
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2535
                     /gene="Cnot10"
                     /note="CCR4-NOT transcription complex, subunit 10; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 ESTs, 2 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 64 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:316034"
                     /db_xref="RGD:1359219"
     CDS             301..2259
                     /gene="Cnot10"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 10
                     isoform X9"
                     /protein_id="XP_038937556.1"
                     /db_xref="GeneID:316034"
                     /db_xref="RGD:1359219"
                     /translation="MDGLDDVENSMLYYNQAVILYHLRQHTEAIAVGEKLYQFIEPFE
                     EKFAQAVCFLLVDLYILTHQAEKALHLLAVLEKMISQGSGNKNGKSETGNNSSKDGSN
                     PKAESAALIEAAKSKIHQYKVRGYIQMKSLKACKREIKSVMNTAGNSAPSLFLKSNFE
                     YLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKK
                     ALQENDNVCAQLSAGNTDPGKKFSGRPMCTLLANKRYELLYNCGIQLLHVGRPLAAFE
                     CLVEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPTKKGIVQSIVGQGYHRKIV
                     LASQSIQNTVYNDGQSSAIPVASVEFAAICLRNALLLLPEEQQDPKQENGSKSSSQLG
                     GNAESSESSETCSPESLSLFSSKSHDGDKLIPAPPSSPLRKQELENLKCSILACSAYV
                     ALALGDNLMALNHADQLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVT
                     DVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSE
                     YDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQMIKRNQLLPAVKAHS
                     DVRKKTVFQPVHPIQPIQMPAFTTVQRK"
ORIGIN      
        1 ttgggcgcta cagaacggaa gccgtggatg gcggggaaaa cagtcctcca ctggcggatg
       61 tgttggtgct gttgctagac gacgaacagt gagttcgtca cttcctcagc ccgtggcccg
      121 cccaggaccg aaccagaggc gaccgaagcc ggcttgagtt gaagagtttt cccccgccta
      181 caggacccgc caccagcccg gcggcgggag tcagggccac gccacctgca gggaagaact
      241 cgagccgagg cgggaagatg gctgcagaca agcctgcagg tccactcagc tgtggaagag
      301 atggatgggt tagacgacgt tgagaacagc atgctgtatt ataaccaagc agtcattctc
      361 tatcatctgc ggcagcacac ggaggccata gctgttggtg aaaaacttta tcagttcata
      421 gaacctttcg aagaaaaatt tgcccaagca gtgtgctttc tgctcgtaga cttgtatata
      481 ttaacccacc aagctgagaa agcgctgcat cttcttgccg tcctagaaaa gatgatttca
      541 cagggtagcg ggaacaaaaa cgggaagagc gagactggca ataacagcag caaagacgga
      601 tccaatccta aggctgagag tgcagcgctg atagaggctg ccaagtccaa gatacaccag
      661 tacaaagtca gagggtacat ccagatgaag tcgctgaagg catgcaaaag ggagatcaag
      721 tctgtcatga acacagctgg aaattccgca ccttccctgt ttcttaaaag caactttgag
      781 tacttaaggg gcaattatcg aaaagcagtg aagctgttaa atagttcaaa cattgccgag
      841 catccaggct tcatgaaaac aggtgagtgc ttgagatgca tgttctggaa taatcttggt
      901 tgtatccatt ttgccatgag caagcacaat ttggggattt tctacttcaa gaaggctctg
      961 caggaaaatg acaatgtctg cgcccagctc agtgcgggta acaccgatcc aggcaaaaag
     1021 ttttctggaa gacccatgtg tacattgctg gccaacaaaa ggtacgagct gctgtacaac
     1081 tgtgggatcc agctgctgca cgtcgggagg cctcttgctg cctttgagtg tctggttgaa
     1141 gctgttcagg tgtaccacgc gaatcctcgt ctttggctcc ggctggctga gtgctgcatt
     1201 gctgccaata aagggacttc tgagcaagaa accaaaggtc ttcccacaaa aaagggaatt
     1261 gtacagtcta ttgttggtca agggtatcac cgtaaaatag ttctggcgtc acagtctatt
     1321 cagaacactg tctacaacga tgggcagtct tcagccattc ctgtagccag tgtggagttt
     1381 gcagccatct gtctcagaaa tgccttgttg ctgttacctg aagagcagca agatccaaag
     1441 caggaaaacg gctccaagag cagcagccaa cttggaggaa atgcggaaag cagcgagagc
     1501 agtgagacgt gcagccctga gagtctttct ctattcagca gtaaaagcca tgatggagat
     1561 aagctcattc ctgctccacc gtcttctccc ctgaggaaac aggagttaga aaacctcaag
     1621 tgctccatcc ttgcttgcag tgcttatgtg gccctggcct taggtgacaa cctcatggcg
     1681 ttgaaccatg cagatcagct cctgcagcag cccaagctgt ctggctctct taagtttttg
     1741 ggccatttat atgccgcaga agccctcatc tccctcgaca gaatatctga tgccattacg
     1801 cacttgaacc cagagaatgt cactgatgtc tctttaggaa tctcttcaaa tgaacaggac
     1861 caaggatcag acaagggtga aaatgaagca atggaatcct ctggcaaacg cgcccctcag
     1921 tgctacccca gttctgtcaa ctctgcccgg actgtgatgc tcttcaacct gggcagtgcg
     1981 tactgcctga ggagcgagta tgacaaggcc cgcaagtgtc tgcatcaggc ggcatcaatg
     2041 atccatccta aagaggtgcc ccctgaggcc atcctgctgg cggtctacct tgagctgcag
     2101 aatggtaaca cgcagctggc cttgcagatg atcaaacgga accagctgct ccctgcagta
     2161 aaggcgcact ccgatgtgag gaagaagaca gtattccagc ctgtgcaccc catccagccc
     2221 atccagatgc cggcattcac cacggtacag aggaagtgag cgctcgctgt ggaggagctg
     2281 tacctgaggc ccagggcgtg ttgagggcct ctcagttgtc cacaggaaag gcagtagagg
     2341 aaatacagtg gcaacagtgc tggccggaag gcggtttgag acgagtgcac ccctcggttt
     2401 tatggcagag gcttacttaa aactaaggac tcataaccca ctgtcagctt ttatttaatc
     2461 tctgcaagtc ttttaattgt gaaccattgt gttggtatgt ctgtgtctag gcattaaaac
     2521 atgttcttat cagaa
//
