LOCUS       NM_001007003            2662 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus CCR4-NOT transcription complex, subunit 10
            (Cnot10), mRNA.
ACCESSION   NM_001007003 XM_243977
VERSION     NM_001007003.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Wahle,E. and Winkler,G.S.
  TITLE     RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3
            complexes
  JOURNAL   Biochim Biophys Acta 1829 (6-7), 561-570 (2013)
   PUBMED   23337855
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Mauxion,F., Preve,B. and Seraphin,B.
  TITLE     C2ORF29/CNOT11 and CNOT10 form a new module of the CCR4-NOT complex
  JOURNAL   RNA Biol 10 (2), 267-276 (2013)
   PUBMED   23232451
REFERENCE   3  (bases 1 to 2662)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 2662)
  AUTHORS   Lau,N.C., Kolkman,A., van Schaik,F.M., Mulder,K.W., Pijnappel,W.W.,
            Heck,A.J. and Timmers,H.T.
  TITLE     Human Ccr4-Not complexes contain variable deadenylase subunits
  JOURNAL   Biochem J 422 (3), 443-453 (2009)
   PUBMED   19558367
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083782.1.
            
            On Nov 22, 2004 this sequence version replaced XM_243977.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083782.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..2662
                     /gene="Cnot10"
                     /note="CCR4-NOT transcription complex, subunit 10"
                     /db_xref="GeneID:316034"
                     /db_xref="RGD:1359219"
     exon            1..147
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     CDS             126..2360
                     /gene="Cnot10"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 10"
                     /protein_id="NP_001007004.1"
                     /db_xref="GeneID:316034"
                     /db_xref="RGD:1359219"
                     /translation="MAADKPADQGAEKHEGAGQSSGVTDQEKELSTSAFQAFTSGNYD
                     ACLQHLACLQDINKDDYKIILNTAVAEFFKNNQTTTDNLRQTLNQLKNQVHSAVEEMD
                     GLDDVENSMLYYNQAVILYHLRQHTEAIAVGEKLYQFIEPFEEKFAQAVCFLLVDLYI
                     LTHQAEKALHLLAVLEKMISQGSGNKNGKSETGNNSSKDGSNPKAESAALIEAAKSKI
                     HQYKVRGYIQMKSLKACKREIKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSS
                     NIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGN
                     TDPGKKFSGRPMCTLLANKRYELLYNCGIQLLHVGRPLAAFECLVEAVQVYHANPRLW
                     LRLAECCIAANKGTSEQETKGLPTKKGIVQSIVGQGYHRKIVLASQSIQNTVYNDGQS
                     SAIPVASVEFAAICLRNALLLLPEEQQDPKQENGSKSSSQLGGNAESSESSETCSSKS
                     HDGDKLIPAPPSSPLRKQELENLKCSILACSAYVALALGDNLMALNHADQLLQQPKLS
                     GSLKFLGHLYAAEALISLDRISDAITHLNPENVTDVSLGISSNEQDQGSDKGENEAME
                     SSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEA
                     ILLAVYLELQNGNTQLALQMIKRNQLLPAVKAHSDVRKKTVFQPVHPIQPIQMPAFTT
                     VQRK"
     exon            148..242
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            243..404
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            405..555
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            556..698
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            699..785
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            786..869
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            870..987
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1137
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1340
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            1341..1462
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            1463..1639
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            1640..1720
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..1834
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            1835..1965
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            1966..2001
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            2002..2129
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            2130..2205
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
     exon            2206..2636
                     /gene="Cnot10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccagaggcga ccgaagccgg cttgagttga agagttttcc cccgcctaca ggacccgcca
       61 ccagcccggc ggcgggagtc agggccacgc cacctgcagg gaagaactcg agccgaggcg
      121 ggaagatggc tgcagacaag cctgcagatc agggagcaga gaaacacgaa ggggcaggcc
      181 agtcatctgg ggtcactgac caggagaagg agctgtccac cagtgctttc caggccttca
      241 catctggaaa ttatgatgcc tgtctgcaac accttgcctg tctgcaagat ataaacaaag
      301 atgattacaa aattattctg aatacagcag tagctgaatt ttttaaaaat aatcaaacaa
      361 caacagataa tttgagacaa acacttaacc agctgaagaa tcaggtccac tcagctgtgg
      421 aagagatgga tgggttagac gacgttgaga acagcatgct gtattataac caagcagtca
      481 ttctctatca tctgcggcag cacacggagg ccatagctgt tggtgaaaaa ctttatcagt
      541 tcatagaacc tttcgaagaa aaatttgccc aagcagtgtg ctttctgctc gtagacttgt
      601 atatattaac ccaccaagct gagaaagcgc tgcatcttct tgccgtccta gaaaagatga
      661 tttcacaggg tagcgggaac aaaaacggga agagcgagac tggcaataac agcagcaaag
      721 acggatccaa tcctaaggct gagagtgcag cgctgataga ggctgccaag tccaagatac
      781 accagtacaa agtcagaggg tacatccaga tgaagtcgct gaaggcatgc aaaagggaga
      841 tcaagtctgt catgaacaca gctggaaatt ccgcaccttc cctgtttctt aaaagcaact
      901 ttgagtactt aaggggcaat tatcgaaaag cagtgaagct gttaaatagt tcaaacattg
      961 ccgagcatcc aggcttcatg aaaacaggtg agtgcttgag atgcatgttc tggaataatc
     1021 ttggttgtat ccattttgcc atgagcaagc acaatttggg gattttctac ttcaagaagg
     1081 ctctgcagga aaatgacaat gtctgcgccc agctcagtgc gggtaacacc gatccaggca
     1141 aaaagttttc tggaagaccc atgtgtacat tgctggccaa caaaaggtac gagctgctgt
     1201 acaactgtgg gatccagctg ctgcacgtcg ggaggcctct tgctgccttt gagtgtctgg
     1261 ttgaagctgt tcaggtgtac cacgcgaatc ctcgtctttg gctccggctg gctgagtgct
     1321 gcattgctgc caataaaggg acttctgagc aagaaaccaa aggtcttccc acaaaaaagg
     1381 gaattgtaca gtctattgtt ggtcaagggt atcaccgtaa aatagttctg gcgtcacagt
     1441 ctattcagaa cactgtctac aacgatgggc agtcttcagc cattcctgta gccagtgtgg
     1501 agtttgcagc catctgtctc agaaatgcct tgttgctgtt acctgaagag cagcaagatc
     1561 caaagcagga aaacggctcc aagagcagca gccaacttgg aggaaatgcg gaaagcagcg
     1621 agagcagtga gacgtgcagc agtaaaagcc atgatggaga taagctcatt cctgctccac
     1681 cgtcttctcc cctgaggaaa caggagttag aaaacctcaa gtgctccatc cttgcttgca
     1741 gtgcttatgt ggccctggcc ttaggtgaca acctcatggc gttgaaccat gcagatcagc
     1801 tcctgcagca gcccaagctg tctggctctc ttaagttttt gggccattta tatgccgcag
     1861 aagccctcat ctccctcgac agaatatctg atgccattac gcacttgaac ccagagaatg
     1921 tcactgatgt ctctttagga atctcttcaa atgaacagga ccaaggatca gacaagggtg
     1981 aaaatgaagc aatggaatcc tctggcaaac gcgcccctca gtgctacccc agttctgtca
     2041 actctgcccg gactgtgatg ctcttcaacc tgggcagtgc gtactgcctg aggagcgagt
     2101 atgacaaggc ccgcaagtgt ctgcatcagg cggcatcaat gatccatcct aaagaggtgc
     2161 cccctgaggc catcctgctg gcggtctacc ttgagctgca gaatggtaac acgcagctgg
     2221 ccttgcagat gatcaaacgg aaccagctgc tccctgcagt aaaggcgcac tccgatgtga
     2281 ggaagaagac agtattccag cctgtgcacc ccatccagcc catccagatg ccggcattca
     2341 ccacggtaca gaggaagtga gcgctcgctg tggaggagct gtacctgagg cccagggcgt
     2401 gttgagggcc tctcagttgt ccacaggaaa ggcagtagag gaaatacagt ggcaacagtg
     2461 ctggccggaa ggcggtttga gacgagtgca cccctcggtt ttatggcaga ggcttactta
     2521 aaactaagga ctcataaccc actgtcagct tttatttaat ctctgcaagt cttttaattg
     2581 tgaaccattg tgttggtatg tctgtgtcta ggcattaaaa catgttctta tcagaaaaaa
     2641 aaaaaaaaaa aaaaaaaaaa aa
//
