LOCUS       XM_039097549            7703 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCR4-NOT transcription complex,
            subunit 1 (Cnot1), transcript variant X10, mRNA.
ACCESSION   XM_039097549
VERSION     XM_039097549.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097549.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7703
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7703
                     /gene="Cnot1"
                     /gene_synonym="RGD1308009"
                     /note="CCR4-NOT transcription complex, subunit 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 68 ESTs, 5 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 206 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:291841"
                     /db_xref="RGD:1308009"
     CDS             311..7426
                     /gene="Cnot1"
                     /gene_synonym="RGD1308009"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 1 isoform
                     X8"
                     /protein_id="XP_038953477.1"
                     /db_xref="GeneID:291841"
                     /db_xref="RGD:1308009"
                     /translation="MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEAD
                     RHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQ
                     KSLKPAPHLFAQLSKVLKLSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSY
                     IDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQER
                     CPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNI
                     IMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAH
                     TWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPV
                     DFIYRPWKHAEGQLSFIQHSLINPEVFCFADYPCHTVATDILKAPPEDDNREIATWKS
                     LDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMP
                     IFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQD
                     LKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRC
                     PSILGGLAPEKDQPKSAQLPAETLATMLACLQACAGSVSQELSETILTMVANCSNVMN
                     KARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNL
                     GSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGLPA
                     VNSDPFVQRKLGTSGLNQPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPH
                     PTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGG
                     IIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLAS
                     ISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPLAGQ
                     VNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPE
                     NIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSN
                     FLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKP
                     ILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTMAIMNVLA
                     ELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQ
                     PEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTIPLF
                     QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAA
                     HHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDN
                     CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQI
                     RLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKC
                     ITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDAT
                     SGADADLLLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELL
                     IRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIE
                     TLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPG
                     LREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEM
                     CVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLL
                     NKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN
                     TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFL
                     RNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP
                     RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSD
                     LRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQN
                     LAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLER
                     LIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQV
                     MEGTGAS"
ORIGIN      
        1 ggccgcgacg tgagcgcgcg acctcgggcg ccattttgtc gagaaacaag cggagttaac
       61 cgaagagggg ggtcgaggag agccggagtc gaggacccag gagtttcctg tgtccagcgc
      121 tgccggagcc gcctgaggtg ccatgtttca gaacagagta agacacttgg taaagaagaa
      181 ctgaagacat ttatagatac cagagatagc ctgattacaa agaaagcatt aacctgcctc
      241 tgaggtgact aaaggggaat aatggtgatt ttgcgccggg ctcggccgcc tgcttccgcc
      301 ccaaccagca atgaatcttg actcgctctc gctggccttg tctcaaatca gctacctggt
      361 ggacaattta accaagaaaa actaccgagc cagccagcag gaaatacagc atattgtaaa
      421 tcggcacggt cctgaggcag acaggcattt attacgctgc ctattttcac atgtggattt
      481 cagtggcgat ggtaaaagca gtggcaaaga tttccatcag acacagtttc tgattcagga
      541 gtgtgcctcg ctgattacaa agccaaattt tatctcgaca ttgtcatatg ccattgataa
      601 tcctttgcac taccagaaga gtttaaaacc tgcaccccac ttatttgccc agctgagtaa
      661 agttctcaag ttaagtaaag tacaagaggt aatttttggt cttgcccttt tgaattcttc
      721 tagcccagat ctcaggggat ttgctgccca gtttattaag cagaagcttc cagatcttct
      781 gcgttcttac attgacgcag acgtcagtgg aaatcaagaa ggtggcttcc aagatatagc
      841 aatagaggtc ctgcacctcc tgctctccca cctcctcttt gggcagaagg gggcctttgg
      901 agtcgggcag gagcagatag acgcctttct caagacgctg cgcagagatt ttccccaaga
      961 gcgttgtcct gtggtgcttg caccactcct ataccctgaa aaacgggaca ttctaatgga
     1021 caggattctg cctgactctg gaggggtagc taagaccatg atggagagct ctctggctga
     1081 tttcatgcaa gaagtgggct atggcttttg tgcaagtatt gaagaatgtc gcaatataat
     1141 catgcagttt ggtgttcggg aggtgacagc tgcccaggtt gccagggtct tgggaatgat
     1201 ggctcggact cactcaggat taacagatgg tattccatta cagagcatct ctgctcccgg
     1261 cagtgggatc tggagtgatg ggaaagataa aagcgagggg gcacaggcac acacgtggaa
     1321 tgtagaggtt ttgatcgatg ttcttaaaga actgaacccg agtttgaatt tcaaggaagt
     1381 aacttatgaa ctggaccatc ctggatttca aattcgtgat agcaaagggc ttcacaatgt
     1441 ggtgtatggc attcagaggg gtctgggcat ggaagtgttc ccagtggact ttatatatag
     1501 gccctggaaa catgcggaag gccagctctc cttcatccag cattccctga taaacccaga
     1561 agtcttctgc tttgccgact acccctgtca cactgttgcc actgatattt tgaaagcacc
     1621 accagaggat gacaatcgag aaattgccac atggaaaagc ttggatttga ttgaatctct
     1681 gctgaggctt gcagaggttg ggcagtatga gcaagtgaaa caactcttca gcttccctat
     1741 caaacactgt ccagacatgt tggtattggc cttacttcaa atcaacacct cctggcacac
     1801 cctacgccat gaactcattt ctactttgat gccaattttc cttggaaacc atcctaactc
     1861 tgccattatt ttgcactatg catggcatgg gcagggacag tctccatcaa ttcgccaact
     1921 tataatgcat gcaatggcag aatggtacat gagaggggag cagtatgacc aggccaaatt
     1981 gtctcgaata cttgatgtgg cccaggactt gaaggccctg tcgatgctgc tgaacggcac
     2041 tccatttgcc tttgttattg accttgctgc actcgcttct cggcgtgaat acctcaaact
     2101 tgacaagtgg ctaacagata agataagaga gcatggggag ccttttatac aagcatgtat
     2161 gactttttta aaaagaaggt gcccttctat tttgggtgga cttgccccag agaaagatca
     2221 gcccaaaagt gctcaacttc ctgctgaaac actagcgaca atgttggcct gtctacaggc
     2281 ttgtgcaggg agtgtttctc aggagttatc cgagactatc ctcaccatgg tagccaattg
     2341 cagtaatgta atgaataagg ccagacagcc accacctgga gttatgccca aaggccgccc
     2401 tcctagtgct agcagcttag atgccatttc tcctgttcag attgaccctc ttgctggaat
     2461 ggcatctctt agtataggtg gttcagctgc ccctcacacc cagagcatgc agggttttcc
     2521 tccaaatttg ggttctgcgt tcagtacacc tcagtcacca gcaaaagcat ttccaccact
     2581 ttcaacccca aatcaaacaa cggcattcag tggtattggg ggactttcat cacagcttcc
     2641 agtaggtggt cttggcacag gaagcctgac tggcatagga actggggccc ttggacttcc
     2701 tgcagtgaac agtgatcctt ttgtacagag gaaactgggc acctctggac tcaaccagcc
     2761 tacattccag cagaccgact tgtctcaggt gtggccagag gcaaatcagc actttagtaa
     2821 agaaatagat gacgaagcaa acagctattt ccagcgaata tataatcacc ccccacatcc
     2881 aaccatgtct gttgatgagg tactagaaat gctacagaga tttaaagact ctacaataaa
     2941 aagggagcga gaagtattta actgtatgct aaggaactta tttgaagaat accggttttt
     3001 tccccagtac cctgataaag aattacatat aacagcctgc ttgtttggtg gcataattga
     3061 aaaaggactg gtcacttaca tggcattggg tctggccctg cgatatgttc ttgaagcctt
     3121 acggaagcct tttgggtcca aaatgtatta ttttggtatt gctgcactag atagatttaa
     3181 aaatagattg aaggactatc ctcagtattg tcaacacctg gcttctatca gtcactttat
     3241 gcagttccca caccatttgc aggagtacat cgaatatgga caacagtctc gagatcctcc
     3301 tgtgaaaatg cagggctcta tcactacccc tggaagtatt gcactggctc aggcccaggc
     3361 ccaggcccag gttccagcaa aagcccctct tgcgggtcag gttaacacaa tggtgaccac
     3421 ctcaacaacc accactgttg ctaaaacggt tacagtcacc aagccaacag gagtcagctt
     3481 taagaaagat gtgccacctt ccataaacac aacgaatatc gatacactgc ttgtggccac
     3541 agatcaaact gagaggattg tggagccccc agagaatatt caagagaaaa ttgcttttat
     3601 tttcaacaat ctctcacagt caaatatgac acaaaaggtt gaagagctta aagaaactgt
     3661 gaaggaagaa tttatgcctt gggtttccca gtatctagtt atgaaaagag tcagtattga
     3721 gccaaacttt catagcttgt attcaaactt tcttgataca ttgaagaatc ctgaatttaa
     3781 caagatggtt ctgaatgaaa cctacagaaa cattaaagtg ctgctgactt ctgataaagc
     3841 tgcggccaat ttctcagatc gttctttgct gaagaacttg ggacattggt taggaatgat
     3901 cacattagct aaaaataaac ccatcttaca cacggacttg gatgtgaaat cccttctgtt
     3961 agaggcttac gttaaaggac aacaggagct gctttatgta gtgccctttg ttgccaaagt
     4021 tctagagtcc agcattcgta gtctggtttt tagaccaccc aatccctgga cgatggccat
     4081 tatgaatgtc ttggcagagc tgcaccagga gcatgacctg aagttaaact tgaagtttga
     4141 gattgaggtg ctctgtaaga acctcgcatt agacatcaac gagctcaaac ctggaaacct
     4201 gctgaaagac aaagatcgcc tgaagaattt agatgaacag ctctctgctc caaagaaaga
     4261 tgtcaaacag ccagaagagc ttcctgccat cacaacaaca acgacttcta caacaccagc
     4321 taccagcact acgtgcacag ccaccgttcc gccacagccg cagtacagct accatgacat
     4381 taatgtctat tctctagcag gcctggcacc tcacattact ctaaacccta caatcccttt
     4441 atttcaggct catccacagt tgaagcagtg tgtgcgacaa gcaattgaac gagctgtcca
     4501 ggagctagtc caccccgtgg tggatcggtc cattaagatt gctatgacta catgtgaaca
     4561 gatagttaga aaggactttg ctctggattc tgaagaatct agaatgagaa tagcagctca
     4621 tcacatgatg cggaacttga cagctggaat ggctatgatt acttgcaggg aacctttact
     4681 gatgagcata tctaccaacc tcaaaaacag cttcgcttca gctctccgta ctgcgtcccc
     4741 acaacaaagg gagatgatgg accaggccgc cgctcagtta gctcaggaca attgtgaatt
     4801 agcttgctgc tttattcaga aaactgcagt ggagaaagca ggccctgaga tggacaagag
     4861 attggcaact gaatttgagc tgaggaaaca cgctcggcaa gaaggccgtc ggtactgtga
     4921 tcctgttgtg cttacatacc aagccgaacg gatgcccgag cagatcaggc tgaaagttgg
     4981 tggtgtggac ccaaagcagc tagccgtcta tgaagagttt gcgcgaaatg tgcctggctt
     5041 cttacctaca aatgacttaa gtcagcctac agggttttta gcacagccca tgaagcaagc
     5101 ttgggcaaca gatgacgtcg ctcagattta tgataagtgt attacagaac tggagcagca
     5161 cctgcatgcc atcccaccaa ctttggccat gaatccccaa gcccaggctc tacgaagtct
     5221 cttagaggtt gtagtattgt ctcggaattc tcgggatgct atagctgctc ttggattact
     5281 acagaaggct gtggagggcc tattggatgc cacaagtggt gctgacgctg acctgctgct
     5341 gcgctacagg gagtgccacc tgctggtgct gaaagggctg caggacggca gggcgtacgg
     5401 gtctccatgg tgcaacaagc agatcacaag gtgcctaatc gaatgccgag atgaatacaa
     5461 gtataatgtg gaggccgtgg agttgttaat ccgaaaccat ctggtcaaca tgcagcagta
     5521 tgaccttcat cttgctcagt cgatggagaa tggcttaaac tacatggccg tggcatttgc
     5581 tatgcaactg gtaaaaattc tgctggtgga cgaaaggagt gttgcccata ttactgaggc
     5641 agatctgttc cacaccattg aaaccctcat gagaattaat gctcattcca gaggcaatgc
     5701 tccagaagga ttgccccagc tgatggaagt ggtgagatct aactatgaag caatgattga
     5761 tcgtgctcat ggaggcccta actttatgat gcattctggg atctctcaag cctcagaata
     5821 tgatgaccct ccaggcctga gggagaaggc agagtatctt ctgagggaat gggtgaatct
     5881 gtaccattca gcagcagctg gccgtgacag taccaaagca ttctctgcgt ttgttggaca
     5941 gatgcaccaa caaggaatac ttaaaactga tgacctcata acaaggtttt ttcgactttg
     6001 cactgaaatg tgtgttgaaa tcagttaccg tgctcaggca gagcagcagc acaatcctgc
     6061 tgccaacccc accatgatcc gggccaagtg ttaccacaac ctggatgcct ttgtccgcct
     6121 cattgcactg ttagtgaagc actctgggga ggccaccaac actgtcacaa agatcaacct
     6181 gcttaataag gttctcggta tagtagtggg agttctcctg caggaccacg atgtccggca
     6241 gagcgagttt cagcagcttc cctaccatag gattttcatc atgctgctgc tggagctcaa
     6301 tgcacctgag cacgtgttgg agaccatcaa tttccagacc cttacagctt tctgcaatac
     6361 attccacatc ttgaggccta ccaaagctcc tggctttgta tatgcttggc ttgaattgat
     6421 ctcgcatcgg atctttattg caagaatgct ggcacacacg ccacagcaga aggggtggcc
     6481 tatgtatgca cagctgttga ttgatttatt caaatattta gcacctttcc ttagaaatgt
     6541 ggaactcact aaacctatgc aaatcctcta caagggtact ctgagagtgc tgctagttct
     6601 tttgcatgat ttcccagagt tcctttgtga ttaccattat gggttctgtg atgtgatccc
     6661 tcctaattgt atccagttaa gaaatttgat cctgagtgcc ttcccaagaa atatgaggct
     6721 cccagaccca ttcacgccta atctgaaggt ggacatgctg agcgaaatta acattgcacc
     6781 tcggatcctc accaacttca ctggagtgat gccacctcag ttcaaaaaag atttggattc
     6841 ttatcttaaa actcgatcac cggtcacttt tctgtctgat ctgcgtagta acctacaggt
     6901 atctaatgaa cctgggaatc gctacaacct ccagcttatc aatgcattgg tgctctatgt
     6961 agggactcag gccatcgcgc acatccacaa caagggcagc acgccttcaa tgagcaccat
     7021 cacccactca gcacacatgg acatcttcca gaatctggct gtggacctag ataccgaggg
     7081 ccggtatctc tttttaaacg caattgcaaa ccagctgcgg tacccaaaca gccacacgca
     7141 ctacttcagc tgcaccatgc tgtacctttt tgccgaggcg aacactgagg caatccagga
     7201 acagatcaca agggttctct tggaacggtt gattgtaaat aggccgcatc cttggggtct
     7261 tctcatcacc ttcattgagc tgattaaaaa cccagcattt aagttctgga accatgaatt
     7321 tgtacactgt gccccagaga tcgaaaagct gttccagtct gttgcgcagt gctgcatggg
     7381 acagaagcag gctcagcaag tgatggaggg gaccggtgcc agttagatga actgtgtata
     7441 tcccttgcag aggcatcaac cttggtccca ctgaaccaag ttcataaact gaagaatcct
     7501 ttcagctcct cctgactttc ctagcccttt ggttctcagg cgtctgcccc aacaactgct
     7561 ggggttggtt ctcctgtcta tgtgggcaag ttccaaagtt taaatgcatt tttttttttg
     7621 actcttggcc aaaatttaga agatgctgtg aatatcattt tgaacttgtg taaatatatg
     7681 aaagagaaaa cttttgtctg gaa
//
