LOCUS       XM_039097547            7721 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCR4-NOT transcription complex,
            subunit 1 (Cnot1), transcript variant X8, mRNA.
ACCESSION   XM_039097547
VERSION     XM_039097547.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097547.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7721
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7721
                     /gene="Cnot1"
                     /gene_synonym="RGD1308009"
                     /note="CCR4-NOT transcription complex, subunit 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 68 ESTs, 5 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 202 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:291841"
                     /db_xref="RGD:1308009"
     CDS             311..7444
                     /gene="Cnot1"
                     /gene_synonym="RGD1308009"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 1 isoform
                     X6"
                     /protein_id="XP_038953475.1"
                     /db_xref="GeneID:291841"
                     /db_xref="RGD:1308009"
                     /translation="MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEAD
                     RHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQ
                     KSLKPAPHLFAQLSKVLKLSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSY
                     IDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQER
                     CPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNI
                     IMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAH
                     TWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPV
                     DFIYRPWKHAEGQLSFIQHSLINPEVFCFADYPCHTVATDILKAPPEDDNREIATWKS
                     LDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMP
                     IFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQD
                     LKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRC
                     PSILGGLAPEKDQPKSAQLPAETLATMLACLQACAGSVSQELSETILTMVANCSNVMN
                     KARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNL
                     GSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPGGLGTGSLTGIGTGALGLPAV
                     NSDPFVQRKLGTSGLNQPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHP
                     TMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGI
                     IEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASI
                     SHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPLAGQV
                     NTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPEN
                     IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNF
                     LDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPI
                     LHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTMAIMNVLAE
                     LHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQP
                     EELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTIPLFQ
                     AHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAH
                     HMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
                     ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIR
                     LKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCI
                     TELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATS
                     GADADLLLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLI
                     RNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIET
                     LMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGL
                     REKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFF
                     RLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV
                     TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQT
                     LTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFK
                     YLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNL
                     ILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSP
                     VTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAH
                     MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQIT
                     RVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQ
                     KQAQQVMEGTGAS"
ORIGIN      
        1 ggccgcgacg tgagcgcgcg acctcgggcg ccattttgtc gagaaacaag cggagttaac
       61 cgaagagggg ggtcgaggag agccggagtc gaggacccag gagtttcctg tgtccagcgc
      121 tgccggagcc gcctgaggtg ccatgtttca gaacagagta agacacttgg taaagaagaa
      181 ctgaagacat ttatagatac cagagatagc ctgattacaa agaaagcatt aacctgcctc
      241 tgaggtgact aaaggggaat aatggtgatt ttgcgccggg ctcggccgcc tgcttccgcc
      301 ccaaccagca atgaatcttg actcgctctc gctggccttg tctcaaatca gctacctggt
      361 ggacaattta accaagaaaa actaccgagc cagccagcag gaaatacagc atattgtaaa
      421 tcggcacggt cctgaggcag acaggcattt attacgctgc ctattttcac atgtggattt
      481 cagtggcgat ggtaaaagca gtggcaaaga tttccatcag acacagtttc tgattcagga
      541 gtgtgcctcg ctgattacaa agccaaattt tatctcgaca ttgtcatatg ccattgataa
      601 tcctttgcac taccagaaga gtttaaaacc tgcaccccac ttatttgccc agctgagtaa
      661 agttctcaag ttaagtaaag tacaagaggt aatttttggt cttgcccttt tgaattcttc
      721 tagcccagat ctcaggggat ttgctgccca gtttattaag cagaagcttc cagatcttct
      781 gcgttcttac attgacgcag acgtcagtgg aaatcaagaa ggtggcttcc aagatatagc
      841 aatagaggtc ctgcacctcc tgctctccca cctcctcttt gggcagaagg gggcctttgg
      901 agtcgggcag gagcagatag acgcctttct caagacgctg cgcagagatt ttccccaaga
      961 gcgttgtcct gtggtgcttg caccactcct ataccctgaa aaacgggaca ttctaatgga
     1021 caggattctg cctgactctg gaggggtagc taagaccatg atggagagct ctctggctga
     1081 tttcatgcaa gaagtgggct atggcttttg tgcaagtatt gaagaatgtc gcaatataat
     1141 catgcagttt ggtgttcggg aggtgacagc tgcccaggtt gccagggtct tgggaatgat
     1201 ggctcggact cactcaggat taacagatgg tattccatta cagagcatct ctgctcccgg
     1261 cagtgggatc tggagtgatg ggaaagataa aagcgagggg gcacaggcac acacgtggaa
     1321 tgtagaggtt ttgatcgatg ttcttaaaga actgaacccg agtttgaatt tcaaggaagt
     1381 aacttatgaa ctggaccatc ctggatttca aattcgtgat agcaaagggc ttcacaatgt
     1441 ggtgtatggc attcagaggg gtctgggcat ggaagtgttc ccagtggact ttatatatag
     1501 gccctggaaa catgcggaag gccagctctc cttcatccag cattccctga taaacccaga
     1561 agtcttctgc tttgccgact acccctgtca cactgttgcc actgatattt tgaaagcacc
     1621 accagaggat gacaatcgag aaattgccac atggaaaagc ttggatttga ttgaatctct
     1681 gctgaggctt gcagaggttg ggcagtatga gcaagtgaaa caactcttca gcttccctat
     1741 caaacactgt ccagacatgt tggtattggc cttacttcaa atcaacacct cctggcacac
     1801 cctacgccat gaactcattt ctactttgat gccaattttc cttggaaacc atcctaactc
     1861 tgccattatt ttgcactatg catggcatgg gcagggacag tctccatcaa ttcgccaact
     1921 tataatgcat gcaatggcag aatggtacat gagaggggag cagtatgacc aggccaaatt
     1981 gtctcgaata cttgatgtgg cccaggactt gaaggccctg tcgatgctgc tgaacggcac
     2041 tccatttgcc tttgttattg accttgctgc actcgcttct cggcgtgaat acctcaaact
     2101 tgacaagtgg ctaacagata agataagaga gcatggggag ccttttatac aagcatgtat
     2161 gactttttta aaaagaaggt gcccttctat tttgggtgga cttgccccag agaaagatca
     2221 gcccaaaagt gctcaacttc ctgctgaaac actagcgaca atgttggcct gtctacaggc
     2281 ttgtgcaggg agtgtttctc aggagttatc cgagactatc ctcaccatgg tagccaattg
     2341 cagtaatgta atgaataagg ccagacagcc accacctgga gttatgccca aaggccgccc
     2401 tcctagtgct agcagcttag atgccatttc tcctgttcag attgaccctc ttgctggaat
     2461 ggcatctctt agtataggtg gttcagctgc ccctcacacc cagagcatgc agggttttcc
     2521 tccaaatttg ggttctgcgt tcagtacacc tcagtcacca gcaaaagcat ttccaccact
     2581 ttcaacccca aatcaaacaa cggcattcag tggtattggg ggactttcat cacagcttcc
     2641 aggtggtctt ggcacaggaa gcctgactgg cataggaact ggggcccttg gacttcctgc
     2701 agtgaacagt gatccttttg tacagaggaa actgggcacc tctggactca accagcctac
     2761 attccagcag accgacttgt ctcaggtgtg gccagaggca aatcagcact ttagtaaaga
     2821 aatagatgac gaagcaaaca gctatttcca gcgaatatat aatcaccccc cacatccaac
     2881 catgtctgtt gatgaggtac tagaaatgct acagagattt aaagactcta caataaaaag
     2941 ggagcgagaa gtatttaact gtatgctaag gaacttattt gaagaatacc ggttttttcc
     3001 ccagtaccct gataaagaat tacatataac agcctgcttg tttggtggca taattgaaaa
     3061 aggactggtc acttacatgg cattgggtct ggccctgcga tatgttcttg aagccttacg
     3121 gaagcctttt gggtccaaaa tgtattattt tggtattgct gcactagata gatttaaaaa
     3181 tagattgaag gactatcctc agtattgtca acacctggct tctatcagtc actttatgca
     3241 gttcccacac catttgcagg agtacatcga atatggacaa cagtctcgag atcctcctgt
     3301 gaaaatgcag ggctctatca ctacccctgg aagtattgca ctggctcagg cccaggccca
     3361 ggcccaggtt ccagcaaaag cccctcttgc gggtcaggtt aacacaatgg tgaccacctc
     3421 aacaaccacc actgttgcta aaacggttac agtcaccaag ccaacaggag tcagctttaa
     3481 gaaagatgtg ccaccttcca taaacacaac gaatatcgat acactgcttg tggccacaga
     3541 tcaaactgag aggattgtgg agcccccaga gaatattcaa gagaaaattg cttttatttt
     3601 caacaatctc tcacagtcaa atatgacaca aaaggttgaa gagcttaaag aaactgtgaa
     3661 ggaagaattt atgccttggg tttcccagta tctagttatg aaaagagtca gtattgagcc
     3721 aaactttcat agcttgtatt caaactttct tgatacattg aagaatcctg aatttaacaa
     3781 gatggttctg aatgaaacct acagaaacat taaagtgctg ctgacttctg ataaagctgc
     3841 ggccaatttc tcagatcgtt ctttgctgaa gaacttggga cattggttag gaatgatcac
     3901 attagctaaa aataaaccca tcttacacac ggacttggat gtgaaatccc ttctgttaga
     3961 ggcttacgtt aaaggacaac aggagctgct ttatgtagtg ccctttgttg ccaaagttct
     4021 agagtccagc attcgtagtc tggtttttag accacccaat ccctggacga tggccattat
     4081 gaatgtcttg gcagagctgc accaggagca tgacctgaag ttaaacttga agtttgagat
     4141 tgaggtgctc tgtaagaacc tcgcattaga catcaacgag ctcaaacctg gaaacctgct
     4201 gaaagacaaa gatcgcctga agaatttaga tgaacagctc tctgctccaa agaaagatgt
     4261 caaacagcca gaagagcttc ctgccatcac aacaacaacg acttctacaa caccagctac
     4321 cagcactacg tgcacagcca ccgttccgcc acagccgcag tacagctacc atgacattaa
     4381 tgtctattct ctagcaggcc tggcacctca cattactcta aaccctacaa tccctttatt
     4441 tcaggctcat ccacagttga agcagtgtgt gcgacaagca attgaacgag ctgtccagga
     4501 gctagtccac cccgtggtgg atcggtccat taagattgct atgactacat gtgaacagat
     4561 agttagaaag gactttgctc tggattctga agaatctaga atgagaatag cagctcatca
     4621 catgatgcgg aacttgacag ctggaatggc tatgattact tgcagggaac ctttactgat
     4681 gagcatatct accaacctca aaaacagctt cgcttcagct ctccgtactg cgtccccaca
     4741 acaaagggag atgatggacc aggccgccgc tcagttagct caggacaatt gtgaattagc
     4801 ttgctgcttt attcagaaaa ctgcagtgga gaaagcaggc cctgagatgg acaagagatt
     4861 ggcaactgaa tttgagctga ggaaacacgc tcggcaagaa ggccgtcggt actgtgatcc
     4921 tgttgtgctt acataccaag ccgaacggat gcccgagcag atcaggctga aagttggtgg
     4981 tgtggaccca aagcagctag ccgtctatga agagtttgcg cgaaatgtgc ctggcttctt
     5041 acctacaaat gacttaagtc agcctacagg gtttttagca cagcccatga agcaagcttg
     5101 ggcaacagat gacgtcgctc agatttatga taagtgtatt acagaactgg agcagcacct
     5161 gcatgccatc ccaccaactt tggccatgaa tccccaagcc caggctctac gaagtctctt
     5221 agaggttgta gtattgtctc ggaattctcg ggatgctata gctgctcttg gattactaca
     5281 gaaggctgtg gagggcctat tggatgccac aagtggtgct gacgctgacc tgctgctgcg
     5341 ctacagggag tgccacctgc tggtgctgaa agggctgcag gacggcaggg cgtacgggtc
     5401 tccatggtgc aacaagcaga tcacaaggtg cctaatcgaa tgccgagatg aatacaagta
     5461 taatgtggag gccgtggagt tgttaatccg aaaccatctg gtcaacatgc agcagtatga
     5521 ccttcatctt gctcagtcga tggagaatgg cttaaactac atggccgtgg catttgctat
     5581 gcaactggta aaaattctgc tggtggacga aaggagtgtt gcccatatta ctgaggcaga
     5641 tctgttccac accattgaaa ccctcatgag aattaatgct cattccagag gcaatgctcc
     5701 agaaggattg ccccagctga tggaagtggt gagatctaac tatgaagcaa tgattgatcg
     5761 tgctcatgga ggccctaact ttatgatgca ttctgggatc tctcaagcct cagaatatga
     5821 tgaccctcca ggcctgaggg agaaggcaga gtatcttctg agggaatggg tgaatctgta
     5881 ccattcagca gcagctggcc gtgacagtac caaagcattc tctgcgtttg ttggacaggt
     5941 agagcttttg gaaagaaaga tgcaccaaca aggaatactt aaaactgatg acctcataac
     6001 aaggtttttt cgactttgca ctgaaatgtg tgttgaaatc agttaccgtg ctcaggcaga
     6061 gcagcagcac aatcctgctg ccaaccccac catgatccgg gccaagtgtt accacaacct
     6121 ggatgccttt gtccgcctca ttgcactgtt agtgaagcac tctggggagg ccaccaacac
     6181 tgtcacaaag atcaacctgc ttaataaggt tctcggtata gtagtgggag ttctcctgca
     6241 ggaccacgat gtccggcaga gcgagtttca gcagcttccc taccatagga ttttcatcat
     6301 gctgctgctg gagctcaatg cacctgagca cgtgttggag accatcaatt tccagaccct
     6361 tacagctttc tgcaatacat tccacatctt gaggcctacc aaagctcctg gctttgtata
     6421 tgcttggctt gaattgatct cgcatcggat ctttattgca agaatgctgg cacacacgcc
     6481 acagcagaag gggtggccta tgtatgcaca gctgttgatt gatttattca aatatttagc
     6541 acctttcctt agaaatgtgg aactcactaa acctatgcaa atcctctaca agggtactct
     6601 gagagtgctg ctagttcttt tgcatgattt cccagagttc ctttgtgatt accattatgg
     6661 gttctgtgat gtgatccctc ctaattgtat ccagttaaga aatttgatcc tgagtgcctt
     6721 cccaagaaat atgaggctcc cagacccatt cacgcctaat ctgaaggtgg acatgctgag
     6781 cgaaattaac attgcacctc ggatcctcac caacttcact ggagtgatgc cacctcagtt
     6841 caaaaaagat ttggattctt atcttaaaac tcgatcaccg gtcacttttc tgtctgatct
     6901 gcgtagtaac ctacaggtat ctaatgaacc tgggaatcgc tacaacctcc agcttatcaa
     6961 tgcattggtg ctctatgtag ggactcaggc catcgcgcac atccacaaca agggcagcac
     7021 gccttcaatg agcaccatca cccactcagc acacatggac atcttccaga atctggctgt
     7081 ggacctagat accgagggcc ggtatctctt tttaaacgca attgcaaacc agctgcggta
     7141 cccaaacagc cacacgcact acttcagctg caccatgctg tacctttttg ccgaggcgaa
     7201 cactgaggca atccaggaac agatcacaag ggttctcttg gaacggttga ttgtaaatag
     7261 gccgcatcct tggggtcttc tcatcacctt cattgagctg attaaaaacc cagcatttaa
     7321 gttctggaac catgaatttg tacactgtgc cccagagatc gaaaagctgt tccagtctgt
     7381 tgcgcagtgc tgcatgggac agaagcaggc tcagcaagtg atggagggga ccggtgccag
     7441 ttagatgaac tgtgtatatc ccttgcagag gcatcaacct tggtcccact gaaccaagtt
     7501 cataaactga agaatccttt cagctcctcc tgactttcct agccctttgg ttctcaggcg
     7561 tctgccccaa caactgctgg ggttggttct cctgtctatg tgggcaagtt ccaaagttta
     7621 aatgcatttt tttttttgac tcttggccaa aatttagaag atgctgtgaa tatcattttg
     7681 aacttgtgta aatatatgaa agagaaaact tttgtctgga a
//
