LOCUS       XM_039097545            7730 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCR4-NOT transcription complex,
            subunit 1 (Cnot1), transcript variant X6, mRNA.
ACCESSION   XM_039097545
VERSION     XM_039097545.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7730
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7730
                     /gene="Cnot1"
                     /gene_synonym="RGD1308009"
                     /note="CCR4-NOT transcription complex, subunit 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 67 ESTs, 5 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 125 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:291841"
                     /db_xref="RGD:1308009"
     CDS             311..7453
                     /gene="Cnot1"
                     /gene_synonym="RGD1308009"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 1 isoform
                     X4"
                     /protein_id="XP_038953473.1"
                     /db_xref="GeneID:291841"
                     /db_xref="RGD:1308009"
                     /translation="MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEAD
                     RHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQ
                     KSLKPAPHLFAQLSKVLKLSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSY
                     IDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRGKDFPQ
                     ERCPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECR
                     NIIMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQ
                     AHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVF
                     PVDFIYRPWKHAEGQLSFIQHSLINPEVFCFADYPCHTVATDILKAPPEDDNREIATW
                     KSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTL
                     MPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVA
                     QDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKR
                     RCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAGSVSQELSETILTMVANCSNV
                     MNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPP
                     NLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGL
                     PAVNSDPFVQRKLGTSGLNQPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNHP
                     PHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLF
                     GGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHL
                     ASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPLA
                     GQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLVATDQTERIVEP
                     PENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLY
                     SNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
                     KPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTMAIMNV
                     LAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDV
                     KQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTIP
                     LFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRI
                     AAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQ
                     DNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPE
                     QIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYD
                     KCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLD
                     ATSGADADLLLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVE
                     LLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHT
                     IETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDP
                     PGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLIT
                     RFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEAT
                     NTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETIN
                     FQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLID
                     LFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQL
                     RNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKT
                     RSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITH
                     SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQE
                     QITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCC
                     MGQKQAQQVMEGTGAS"
ORIGIN      
        1 ggccgcgacg tgagcgcgcg acctcgggcg ccattttgtc gagaaacaag cggagttaac
       61 cgaagagggg ggtcgaggag agccggagtc gaggacccag gagtttcctg tgtccagcgc
      121 tgccggagcc gcctgaggtg ccatgtttca gaacagagta agacacttgg taaagaagaa
      181 ctgaagacat ttatagatac cagagatagc ctgattacaa agaaagcatt aacctgcctc
      241 tgaggtgact aaaggggaat aatggtgatt ttgcgccggg ctcggccgcc tgcttccgcc
      301 ccaaccagca atgaatcttg actcgctctc gctggccttg tctcaaatca gctacctggt
      361 ggacaattta accaagaaaa actaccgagc cagccagcag gaaatacagc atattgtaaa
      421 tcggcacggt cctgaggcag acaggcattt attacgctgc ctattttcac atgtggattt
      481 cagtggcgat ggtaaaagca gtggcaaaga tttccatcag acacagtttc tgattcagga
      541 gtgtgcctcg ctgattacaa agccaaattt tatctcgaca ttgtcatatg ccattgataa
      601 tcctttgcac taccagaaga gtttaaaacc tgcaccccac ttatttgccc agctgagtaa
      661 agttctcaag ttaagtaaag tacaagaggt aatttttggt cttgcccttt tgaattcttc
      721 tagcccagat ctcaggggat ttgctgccca gtttattaag cagaagcttc cagatcttct
      781 gcgttcttac attgacgcag acgtcagtgg aaatcaagaa ggtggcttcc aagatatagc
      841 aatagaggtc ctgcacctcc tgctctccca cctcctcttt gggcagaagg gggcctttgg
      901 agtcgggcag gagcagatag acgcctttct caagacgctg cgcagaggta aggattttcc
      961 ccaagagcgt tgtcctgtgg tgcttgcacc actcctatac cctgaaaaac gggacattct
     1021 aatggacagg attctgcctg actctggagg ggtagctaag accatgatgg agagctctct
     1081 ggctgatttc atgcaagaag tgggctatgg cttttgtgca agtattgaag aatgtcgcaa
     1141 tataatcatg cagtttggtg ttcgggaggt gacagctgcc caggttgcca gggtcttggg
     1201 aatgatggct cggactcact caggattaac agatggtatt ccattacaga gcatctctgc
     1261 tcccggcagt gggatctgga gtgatgggaa agataaaagc gagggggcac aggcacacac
     1321 gtggaatgta gaggttttga tcgatgttct taaagaactg aacccgagtt tgaatttcaa
     1381 ggaagtaact tatgaactgg accatcctgg atttcaaatt cgtgatagca aagggcttca
     1441 caatgtggtg tatggcattc agaggggtct gggcatggaa gtgttcccag tggactttat
     1501 atataggccc tggaaacatg cggaaggcca gctctccttc atccagcatt ccctgataaa
     1561 cccagaagtc ttctgctttg ccgactaccc ctgtcacact gttgccactg atattttgaa
     1621 agcaccacca gaggatgaca atcgagaaat tgccacatgg aaaagcttgg atttgattga
     1681 atctctgctg aggcttgcag aggttgggca gtatgagcaa gtgaaacaac tcttcagctt
     1741 ccctatcaaa cactgtccag acatgttggt attggcctta cttcaaatca acacctcctg
     1801 gcacacccta cgccatgaac tcatttctac tttgatgcca attttccttg gaaaccatcc
     1861 taactctgcc attattttgc actatgcatg gcatgggcag ggacagtctc catcaattcg
     1921 ccaacttata atgcatgcaa tggcagaatg gtacatgaga ggggagcagt atgaccaggc
     1981 caaattgtct cgaatacttg atgtggccca ggacttgaag gccctgtcga tgctgctgaa
     2041 cggcactcca tttgcctttg ttattgacct tgctgcactc gcttctcggc gtgaatacct
     2101 caaacttgac aagtggctaa cagataagat aagagagcat ggggagcctt ttatacaagc
     2161 atgtatgact tttttaaaaa gaaggtgccc ttctattttg ggtggacttg ccccagagaa
     2221 agatcagccc aaaagtgctc aacttcctgc tgaaacacta gcgacaatgt tggcctgtct
     2281 acaggcttgt gcagggagtg tttctcagga gttatccgag actatcctca ccatggtagc
     2341 caattgcagt aatgtaatga ataaggccag acagccacca cctggagtta tgcccaaagg
     2401 ccgccctcct agtgctagca gcttagatgc catttctcct gttcagattg accctcttgc
     2461 tggaatggca tctcttagta taggtggttc agctgcccct cacacccaga gcatgcaggg
     2521 ttttcctcca aatttgggtt ctgcgttcag tacacctcag tcaccagcaa aagcatttcc
     2581 accactttca accccaaatc aaacaacggc attcagtggt attgggggac tttcatcaca
     2641 gcttccagta ggtggtcttg gcacaggaag cctgactggc ataggaactg gggcccttgg
     2701 acttcctgca gtgaacagtg atccttttgt acagaggaaa ctgggcacct ctggactcaa
     2761 ccagcctaca ttccagcaga ccgacttgtc tcaggtgtgg ccagaggcaa atcagcactt
     2821 tagtaaagaa atagatgacg aagcaaacag ctatttccag cgaatatata atcacccccc
     2881 acatccaacc atgtctgttg atgaggtact agaaatgcta cagagattta aagactctac
     2941 aataaaaagg gagcgagaag tatttaactg tatgctaagg aacttatttg aagaataccg
     3001 gttttttccc cagtaccctg ataaagaatt acatataaca gcctgcttgt ttggtggcat
     3061 aattgaaaaa ggactggtca cttacatggc attgggtctg gccctgcgat atgttcttga
     3121 agccttacgg aagccttttg ggtccaaaat gtattatttt ggtattgctg cactagatag
     3181 atttaaaaat agattgaagg actatcctca gtattgtcaa cacctggctt ctatcagtca
     3241 ctttatgcag ttcccacacc atttgcagga gtacatcgaa tatggacaac agtctcgaga
     3301 tcctcctgtg aaaatgcagg gctctatcac tacccctgga agtattgcac tggctcaggc
     3361 ccaggcccag gcccaggttc cagcaaaagc ccctcttgcg ggtcaggtta acacaatggt
     3421 gaccacctca acaaccacca ctgttgctaa aacggttaca gtcaccaagc caacaggagt
     3481 cagctttaag aaagatgtgc caccttccat aaacacaacg aatatcgata cactgcttgt
     3541 ggccacagat caaactgaga ggattgtgga gcccccagag aatattcaag agaaaattgc
     3601 ttttattttc aacaatctct cacagtcaaa tatgacacaa aaggttgaag agcttaaaga
     3661 aactgtgaag gaagaattta tgccttgggt ttcccagtat ctagttatga aaagagtcag
     3721 tattgagcca aactttcata gcttgtattc aaactttctt gatacattga agaatcctga
     3781 atttaacaag atggttctga atgaaaccta cagaaacatt aaagtgctgc tgacttctga
     3841 taaagctgcg gccaatttct cagatcgttc tttgctgaag aacttgggac attggttagg
     3901 aatgatcaca ttagctaaaa ataaacccat cttacacacg gacttggatg tgaaatccct
     3961 tctgttagag gcttacgtta aaggacaaca ggagctgctt tatgtagtgc cctttgttgc
     4021 caaagttcta gagtccagca ttcgtagtct ggtttttaga ccacccaatc cctggacgat
     4081 ggccattatg aatgtcttgg cagagctgca ccaggagcat gacctgaagt taaacttgaa
     4141 gtttgagatt gaggtgctct gtaagaacct cgcattagac atcaacgagc tcaaacctgg
     4201 aaacctgctg aaagacaaag atcgcctgaa gaatttagat gaacagctct ctgctccaaa
     4261 gaaagatgtc aaacagccag aagagcttcc tgccatcaca acaacaacga cttctacaac
     4321 accagctacc agcactacgt gcacagccac cgttccgcca cagccgcagt acagctacca
     4381 tgacattaat gtctattctc tagcaggcct ggcacctcac attactctaa accctacaat
     4441 ccctttattt caggctcatc cacagttgaa gcagtgtgtg cgacaagcaa ttgaacgagc
     4501 tgtccaggag ctagtccacc ccgtggtgga tcggtccatt aagattgcta tgactacatg
     4561 tgaacagata gttagaaagg actttgctct ggattctgaa gaatctagaa tgagaatagc
     4621 agctcatcac atgatgcgga acttgacagc tggaatggct atgattactt gcagggaacc
     4681 tttactgatg agcatatcta ccaacctcaa aaacagcttc gcttcagctc tccgtactgc
     4741 gtccccacaa caaagggaga tgatggacca ggccgccgct cagttagctc aggacaattg
     4801 tgaattagct tgctgcttta ttcagaaaac tgcagtggag aaagcaggcc ctgagatgga
     4861 caagagattg gcaactgaat ttgagctgag gaaacacgct cggcaagaag gccgtcggta
     4921 ctgtgatcct gttgtgctta cataccaagc cgaacggatg cccgagcaga tcaggctgaa
     4981 agttggtggt gtggacccaa agcagctagc cgtctatgaa gagtttgcgc gaaatgtgcc
     5041 tggcttctta cctacaaatg acttaagtca gcctacaggg tttttagcac agcccatgaa
     5101 gcaagcttgg gcaacagatg acgtcgctca gatttatgat aagtgtatta cagaactgga
     5161 gcagcacctg catgccatcc caccaacttt ggccatgaat ccccaagccc aggctctacg
     5221 aagtctctta gaggttgtag tattgtctcg gaattctcgg gatgctatag ctgctcttgg
     5281 attactacag aaggctgtgg agggcctatt ggatgccaca agtggtgctg acgctgacct
     5341 gctgctgcgc tacagggagt gccacctgct ggtgctgaaa gggctgcagg acggcagggc
     5401 gtacgggtct ccatggtgca acaagcagat cacaaggtgc ctaatcgaat gccgagatga
     5461 atacaagtat aatgtggagg ccgtggagtt gttaatccga aaccatctgg tcaacatgca
     5521 gcagtatgac cttcatcttg ctcagtcgat ggagaatggc ttaaactaca tggccgtggc
     5581 atttgctatg caactggtaa aaattctgct ggtggacgaa aggagtgttg cccatattac
     5641 tgaggcagat ctgttccaca ccattgaaac cctcatgaga attaatgctc attccagagg
     5701 caatgctcca gaaggattgc cccagctgat ggaagtggtg agatctaact atgaagcaat
     5761 gattgatcgt gctcatggag gccctaactt tatgatgcat tctgggatct ctcaagcctc
     5821 agaatatgat gaccctccag gcctgaggga gaaggcagag tatcttctga gggaatgggt
     5881 gaatctgtac cattcagcag cagctggccg tgacagtacc aaagcattct ctgcgtttgt
     5941 tggacaggta gagcttttgg aaagaaagat gcaccaacaa ggaatactta aaactgatga
     6001 cctcataaca aggttttttc gactttgcac tgaaatgtgt gttgaaatca gttaccgtgc
     6061 tcaggcagag cagcagcaca atcctgctgc caaccccacc atgatccggg ccaagtgtta
     6121 ccacaacctg gatgcctttg tccgcctcat tgcactgtta gtgaagcact ctggggaggc
     6181 caccaacact gtcacaaaga tcaacctgct taataaggtt ctcggtatag tagtgggagt
     6241 tctcctgcag gaccacgatg tccggcagag cgagtttcag cagcttccct accataggat
     6301 tttcatcatg ctgctgctgg agctcaatgc acctgagcac gtgttggaga ccatcaattt
     6361 ccagaccctt acagctttct gcaatacatt ccacatcttg aggcctacca aagctcctgg
     6421 ctttgtatat gcttggcttg aattgatctc gcatcggatc tttattgcaa gaatgctggc
     6481 acacacgcca cagcagaagg ggtggcctat gtatgcacag ctgttgattg atttattcaa
     6541 atatttagca cctttcctta gaaatgtgga actcactaaa cctatgcaaa tcctctacaa
     6601 gggtactctg agagtgctgc tagttctttt gcatgatttc ccagagttcc tttgtgatta
     6661 ccattatggg ttctgtgatg tgatccctcc taattgtatc cagttaagaa atttgatcct
     6721 gagtgccttc ccaagaaata tgaggctccc agacccattc acgcctaatc tgaaggtgga
     6781 catgctgagc gaaattaaca ttgcacctcg gatcctcacc aacttcactg gagtgatgcc
     6841 acctcagttc aaaaaagatt tggattctta tcttaaaact cgatcaccgg tcacttttct
     6901 gtctgatctg cgtagtaacc tacaggtatc taatgaacct gggaatcgct acaacctcca
     6961 gcttatcaat gcattggtgc tctatgtagg gactcaggcc atcgcgcaca tccacaacaa
     7021 gggcagcacg ccttcaatga gcaccatcac ccactcagca cacatggaca tcttccagaa
     7081 tctggctgtg gacctagata ccgagggccg gtatctcttt ttaaacgcaa ttgcaaacca
     7141 gctgcggtac ccaaacagcc acacgcacta cttcagctgc accatgctgt acctttttgc
     7201 cgaggcgaac actgaggcaa tccaggaaca gatcacaagg gttctcttgg aacggttgat
     7261 tgtaaatagg ccgcatcctt ggggtcttct catcaccttc attgagctga ttaaaaaccc
     7321 agcatttaag ttctggaacc atgaatttgt acactgtgcc ccagagatcg aaaagctgtt
     7381 ccagtctgtt gcgcagtgct gcatgggaca gaagcaggct cagcaagtga tggaggggac
     7441 cggtgccagt tagatgaact gtgtatatcc cttgcagagg catcaacctt ggtcccactg
     7501 aaccaagttc ataaactgaa gaatcctttc agctcctcct gactttccta gccctttggt
     7561 tctcaggcgt ctgccccaac aactgctggg gttggttctc ctgtctatgt gggcaagttc
     7621 caaagtttaa atgcattttt ttttttgact cttggccaaa atttagaaga tgctgtgaat
     7681 atcattttga acttgtgtaa atatatgaaa gagaaaactt ttgtctggaa
//
