LOCUS       XM_039097544            7739 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCR4-NOT transcription complex,
            subunit 1 (Cnot1), transcript variant X5, mRNA.
ACCESSION   XM_039097544
VERSION     XM_039097544.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097544.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7739
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7739
                     /gene="Cnot1"
                     /gene_synonym="RGD1308009"
                     /note="CCR4-NOT transcription complex, subunit 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 68 ESTs, 5 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 202 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:291841"
                     /db_xref="RGD:1308009"
     CDS             311..7462
                     /gene="Cnot1"
                     /gene_synonym="RGD1308009"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 1 isoform
                     X3"
                     /protein_id="XP_038953472.1"
                     /db_xref="GeneID:291841"
                     /db_xref="RGD:1308009"
                     /translation="MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEAD
                     RHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQ
                     KSLKPAPHLFAQLSKVLKLSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSY
                     IDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQER
                     CPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNI
                     IMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAH
                     TWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPV
                     DFIYRPWKHAEGQLSFIQHSLINPEVFCFADYPCHTVATDILKAPPEDDNREIATWKS
                     LDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMP
                     IFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQD
                     LKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRC
                     PSILGGLAPEKDQPKSAQLPAETLATMLACLQACAGSVSQELSETILTMVANCSNVMN
                     KARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNL
                     GSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGLPA
                     VNSDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIY
                     NHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITA
                     CLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYC
                     QHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKA
                     PLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLVATDQTERI
                     VEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFH
                     SLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITL
                     AKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTMAI
                     MNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
                     KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNP
                     TIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESR
                     MRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQ
                     LAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAER
                     MPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQ
                     IYDKCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEG
                     LLDATSGADADLLLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVE
                     AVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADL
                     FHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEY
                     DDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDD
                     LITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSG
                     EATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLE
                     TINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQL
                     LIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNC
                     IQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSY
                     LKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMST
                     ITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEA
                     IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVA
                     QCCMGQKQAQQVMEGTGAS"
ORIGIN      
        1 ggccgcgacg tgagcgcgcg acctcgggcg ccattttgtc gagaaacaag cggagttaac
       61 cgaagagggg ggtcgaggag agccggagtc gaggacccag gagtttcctg tgtccagcgc
      121 tgccggagcc gcctgaggtg ccatgtttca gaacagagta agacacttgg taaagaagaa
      181 ctgaagacat ttatagatac cagagatagc ctgattacaa agaaagcatt aacctgcctc
      241 tgaggtgact aaaggggaat aatggtgatt ttgcgccggg ctcggccgcc tgcttccgcc
      301 ccaaccagca atgaatcttg actcgctctc gctggccttg tctcaaatca gctacctggt
      361 ggacaattta accaagaaaa actaccgagc cagccagcag gaaatacagc atattgtaaa
      421 tcggcacggt cctgaggcag acaggcattt attacgctgc ctattttcac atgtggattt
      481 cagtggcgat ggtaaaagca gtggcaaaga tttccatcag acacagtttc tgattcagga
      541 gtgtgcctcg ctgattacaa agccaaattt tatctcgaca ttgtcatatg ccattgataa
      601 tcctttgcac taccagaaga gtttaaaacc tgcaccccac ttatttgccc agctgagtaa
      661 agttctcaag ttaagtaaag tacaagaggt aatttttggt cttgcccttt tgaattcttc
      721 tagcccagat ctcaggggat ttgctgccca gtttattaag cagaagcttc cagatcttct
      781 gcgttcttac attgacgcag acgtcagtgg aaatcaagaa ggtggcttcc aagatatagc
      841 aatagaggtc ctgcacctcc tgctctccca cctcctcttt gggcagaagg gggcctttgg
      901 agtcgggcag gagcagatag acgcctttct caagacgctg cgcagagatt ttccccaaga
      961 gcgttgtcct gtggtgcttg caccactcct ataccctgaa aaacgggaca ttctaatgga
     1021 caggattctg cctgactctg gaggggtagc taagaccatg atggagagct ctctggctga
     1081 tttcatgcaa gaagtgggct atggcttttg tgcaagtatt gaagaatgtc gcaatataat
     1141 catgcagttt ggtgttcggg aggtgacagc tgcccaggtt gccagggtct tgggaatgat
     1201 ggctcggact cactcaggat taacagatgg tattccatta cagagcatct ctgctcccgg
     1261 cagtgggatc tggagtgatg ggaaagataa aagcgagggg gcacaggcac acacgtggaa
     1321 tgtagaggtt ttgatcgatg ttcttaaaga actgaacccg agtttgaatt tcaaggaagt
     1381 aacttatgaa ctggaccatc ctggatttca aattcgtgat agcaaagggc ttcacaatgt
     1441 ggtgtatggc attcagaggg gtctgggcat ggaagtgttc ccagtggact ttatatatag
     1501 gccctggaaa catgcggaag gccagctctc cttcatccag cattccctga taaacccaga
     1561 agtcttctgc tttgccgact acccctgtca cactgttgcc actgatattt tgaaagcacc
     1621 accagaggat gacaatcgag aaattgccac atggaaaagc ttggatttga ttgaatctct
     1681 gctgaggctt gcagaggttg ggcagtatga gcaagtgaaa caactcttca gcttccctat
     1741 caaacactgt ccagacatgt tggtattggc cttacttcaa atcaacacct cctggcacac
     1801 cctacgccat gaactcattt ctactttgat gccaattttc cttggaaacc atcctaactc
     1861 tgccattatt ttgcactatg catggcatgg gcagggacag tctccatcaa ttcgccaact
     1921 tataatgcat gcaatggcag aatggtacat gagaggggag cagtatgacc aggccaaatt
     1981 gtctcgaata cttgatgtgg cccaggactt gaaggccctg tcgatgctgc tgaacggcac
     2041 tccatttgcc tttgttattg accttgctgc actcgcttct cggcgtgaat acctcaaact
     2101 tgacaagtgg ctaacagata agataagaga gcatggggag ccttttatac aagcatgtat
     2161 gactttttta aaaagaaggt gcccttctat tttgggtgga cttgccccag agaaagatca
     2221 gcccaaaagt gctcaacttc ctgctgaaac actagcgaca atgttggcct gtctacaggc
     2281 ttgtgcaggg agtgtttctc aggagttatc cgagactatc ctcaccatgg tagccaattg
     2341 cagtaatgta atgaataagg ccagacagcc accacctgga gttatgccca aaggccgccc
     2401 tcctagtgct agcagcttag atgccatttc tcctgttcag attgaccctc ttgctggaat
     2461 ggcatctctt agtataggtg gttcagctgc ccctcacacc cagagcatgc agggttttcc
     2521 tccaaatttg ggttctgcgt tcagtacacc tcagtcacca gcaaaagcat ttccaccact
     2581 ttcaacccca aatcaaacaa cggcattcag tggtattggg ggactttcat cacagcttcc
     2641 agtaggtggt cttggcacag gaagcctgac tggcatagga actggggccc ttggacttcc
     2701 tgcagtgaac agtgatcctt ttgtacagag gaaactgggc acctctggac tcaaccagcc
     2761 tacattccag cagagtaaga tgaaaccttc cgacttgtct caggtgtggc cagaggcaaa
     2821 tcagcacttt agtaaagaaa tagatgacga agcaaacagc tatttccagc gaatatataa
     2881 tcacccccca catccaacca tgtctgttga tgaggtacta gaaatgctac agagatttaa
     2941 agactctaca ataaaaaggg agcgagaagt atttaactgt atgctaagga acttatttga
     3001 agaataccgg ttttttcccc agtaccctga taaagaatta catataacag cctgcttgtt
     3061 tggtggcata attgaaaaag gactggtcac ttacatggca ttgggtctgg ccctgcgata
     3121 tgttcttgaa gccttacgga agccttttgg gtccaaaatg tattattttg gtattgctgc
     3181 actagataga tttaaaaata gattgaagga ctatcctcag tattgtcaac acctggcttc
     3241 tatcagtcac tttatgcagt tcccacacca tttgcaggag tacatcgaat atggacaaca
     3301 gtctcgagat cctcctgtga aaatgcaggg ctctatcact acccctggaa gtattgcact
     3361 ggctcaggcc caggcccagg cccaggttcc agcaaaagcc cctcttgcgg gtcaggttaa
     3421 cacaatggtg accacctcaa caaccaccac tgttgctaaa acggttacag tcaccaagcc
     3481 aacaggagtc agctttaaga aagatgtgcc accttccata aacacaacga atatcgatac
     3541 actgcttgtg gccacagatc aaactgagag gattgtggag cccccagaga atattcaaga
     3601 gaaaattgct tttattttca acaatctctc acagtcaaat atgacacaaa aggttgaaga
     3661 gcttaaagaa actgtgaagg aagaatttat gccttgggtt tcccagtatc tagttatgaa
     3721 aagagtcagt attgagccaa actttcatag cttgtattca aactttcttg atacattgaa
     3781 gaatcctgaa tttaacaaga tggttctgaa tgaaacctac agaaacatta aagtgctgct
     3841 gacttctgat aaagctgcgg ccaatttctc agatcgttct ttgctgaaga acttgggaca
     3901 ttggttagga atgatcacat tagctaaaaa taaacccatc ttacacacgg acttggatgt
     3961 gaaatccctt ctgttagagg cttacgttaa aggacaacag gagctgcttt atgtagtgcc
     4021 ctttgttgcc aaagttctag agtccagcat tcgtagtctg gtttttagac cacccaatcc
     4081 ctggacgatg gccattatga atgtcttggc agagctgcac caggagcatg acctgaagtt
     4141 aaacttgaag tttgagattg aggtgctctg taagaacctc gcattagaca tcaacgagct
     4201 caaacctgga aacctgctga aagacaaaga tcgcctgaag aatttagatg aacagctctc
     4261 tgctccaaag aaagatgtca aacagccaga agagcttcct gccatcacaa caacaacgac
     4321 ttctacaaca ccagctacca gcactacgtg cacagccacc gttccgccac agccgcagta
     4381 cagctaccat gacattaatg tctattctct agcaggcctg gcacctcaca ttactctaaa
     4441 ccctacaatc cctttatttc aggctcatcc acagttgaag cagtgtgtgc gacaagcaat
     4501 tgaacgagct gtccaggagc tagtccaccc cgtggtggat cggtccatta agattgctat
     4561 gactacatgt gaacagatag ttagaaagga ctttgctctg gattctgaag aatctagaat
     4621 gagaatagca gctcatcaca tgatgcggaa cttgacagct ggaatggcta tgattacttg
     4681 cagggaacct ttactgatga gcatatctac caacctcaaa aacagcttcg cttcagctct
     4741 ccgtactgcg tccccacaac aaagggagat gatggaccag gccgccgctc agttagctca
     4801 ggacaattgt gaattagctt gctgctttat tcagaaaact gcagtggaga aagcaggccc
     4861 tgagatggac aagagattgg caactgaatt tgagctgagg aaacacgctc ggcaagaagg
     4921 ccgtcggtac tgtgatcctg ttgtgcttac ataccaagcc gaacggatgc ccgagcagat
     4981 caggctgaaa gttggtggtg tggacccaaa gcagctagcc gtctatgaag agtttgcgcg
     5041 aaatgtgcct ggcttcttac ctacaaatga cttaagtcag cctacagggt ttttagcaca
     5101 gcccatgaag caagcttggg caacagatga cgtcgctcag atttatgata agtgtattac
     5161 agaactggag cagcacctgc atgccatccc accaactttg gccatgaatc cccaagccca
     5221 ggctctacga agtctcttag aggttgtagt attgtctcgg aattctcggg atgctatagc
     5281 tgctcttgga ttactacaga aggctgtgga gggcctattg gatgccacaa gtggtgctga
     5341 cgctgacctg ctgctgcgct acagggagtg ccacctgctg gtgctgaaag ggctgcagga
     5401 cggcagggcg tacgggtctc catggtgcaa caagcagatc acaaggtgcc taatcgaatg
     5461 ccgagatgaa tacaagtata atgtggaggc cgtggagttg ttaatccgaa accatctggt
     5521 caacatgcag cagtatgacc ttcatcttgc tcagtcgatg gagaatggct taaactacat
     5581 ggccgtggca tttgctatgc aactggtaaa aattctgctg gtggacgaaa ggagtgttgc
     5641 ccatattact gaggcagatc tgttccacac cattgaaacc ctcatgagaa ttaatgctca
     5701 ttccagaggc aatgctccag aaggattgcc ccagctgatg gaagtggtga gatctaacta
     5761 tgaagcaatg attgatcgtg ctcatggagg ccctaacttt atgatgcatt ctgggatctc
     5821 tcaagcctca gaatatgatg accctccagg cctgagggag aaggcagagt atcttctgag
     5881 ggaatgggtg aatctgtacc attcagcagc agctggccgt gacagtacca aagcattctc
     5941 tgcgtttgtt ggacaggtag agcttttgga aagaaagatg caccaacaag gaatacttaa
     6001 aactgatgac ctcataacaa ggttttttcg actttgcact gaaatgtgtg ttgaaatcag
     6061 ttaccgtgct caggcagagc agcagcacaa tcctgctgcc aaccccacca tgatccgggc
     6121 caagtgttac cacaacctgg atgcctttgt ccgcctcatt gcactgttag tgaagcactc
     6181 tggggaggcc accaacactg tcacaaagat caacctgctt aataaggttc tcggtatagt
     6241 agtgggagtt ctcctgcagg accacgatgt ccggcagagc gagtttcagc agcttcccta
     6301 ccataggatt ttcatcatgc tgctgctgga gctcaatgca cctgagcacg tgttggagac
     6361 catcaatttc cagaccctta cagctttctg caatacattc cacatcttga ggcctaccaa
     6421 agctcctggc tttgtatatg cttggcttga attgatctcg catcggatct ttattgcaag
     6481 aatgctggca cacacgccac agcagaaggg gtggcctatg tatgcacagc tgttgattga
     6541 tttattcaaa tatttagcac ctttccttag aaatgtggaa ctcactaaac ctatgcaaat
     6601 cctctacaag ggtactctga gagtgctgct agttcttttg catgatttcc cagagttcct
     6661 ttgtgattac cattatgggt tctgtgatgt gatccctcct aattgtatcc agttaagaaa
     6721 tttgatcctg agtgccttcc caagaaatat gaggctccca gacccattca cgcctaatct
     6781 gaaggtggac atgctgagcg aaattaacat tgcacctcgg atcctcacca acttcactgg
     6841 agtgatgcca cctcagttca aaaaagattt ggattcttat cttaaaactc gatcaccggt
     6901 cacttttctg tctgatctgc gtagtaacct acaggtatct aatgaacctg ggaatcgcta
     6961 caacctccag cttatcaatg cattggtgct ctatgtaggg actcaggcca tcgcgcacat
     7021 ccacaacaag ggcagcacgc cttcaatgag caccatcacc cactcagcac acatggacat
     7081 cttccagaat ctggctgtgg acctagatac cgagggccgg tatctctttt taaacgcaat
     7141 tgcaaaccag ctgcggtacc caaacagcca cacgcactac ttcagctgca ccatgctgta
     7201 cctttttgcc gaggcgaaca ctgaggcaat ccaggaacag atcacaaggg ttctcttgga
     7261 acggttgatt gtaaataggc cgcatccttg gggtcttctc atcaccttca ttgagctgat
     7321 taaaaaccca gcatttaagt tctggaacca tgaatttgta cactgtgccc cagagatcga
     7381 aaagctgttc cagtctgttg cgcagtgctg catgggacag aagcaggctc agcaagtgat
     7441 ggaggggacc ggtgccagtt agatgaactg tgtatatccc ttgcagaggc atcaaccttg
     7501 gtcccactga accaagttca taaactgaag aatcctttca gctcctcctg actttcctag
     7561 ccctttggtt ctcaggcgtc tgccccaaca actgctgggg ttggttctcc tgtctatgtg
     7621 ggcaagttcc aaagtttaaa tgcatttttt tttttgactc ttggccaaaa tttagaagat
     7681 gctgtgaata tcattttgaa cttgtgtaaa tatatgaaag agaaaacttt tgtctggaa
//
