LOCUS       XM_017593701            2089 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cyclic nucleotide binding domain
            containing 1 (Cnbd1), transcript variant X1, mRNA.
ACCESSION   XM_017593701
VERSION     XM_017593701.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017593701.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017593701.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2089
                     /gene="Cnbd1"
                     /note="cyclic nucleotide binding domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:689462"
                     /db_xref="RGD:1592300"
     CDS             145..1680
                     /gene="Cnbd1"
                     /codon_start=1
                     /product="cyclic nucleotide-binding domain-containing
                     protein 1 isoform X1"
                     /protein_id="XP_017449190.1"
                     /db_xref="GeneID:689462"
                     /db_xref="RGD:1592300"
                     /translation="MTEDSLPTDILAHMIAINNVPPPPLRSIPRLKVRKTINYGQLNA
                     LCHIRGLESRRNSSLYLAAHDTFIKQYPQIFLHEKTVLPKVPQPVEKRKSDLQIDQKI
                     SQPVKSHNISLYLSEARGGPCINEGELSESKFQKFLDILKKLPVYRTIHEHNFVWKML
                     KNIPALTSQLRSEHLKILSKKVMSETWIKGSTVIGDDGLYIMLTGHARRRVKVFRSLI
                     EEEDSIVSSISRESFLFDVDLKDSTVVEFYVPSKKLTVKKWGVFGSLEVRPDMDECER
                     SIVTDDDCEILKIPTKEYEKLKLEKVKRENAQKLKLIRKCPFYEIWPTLSIYELVSLS
                     TFKIFPPGHVLVESGDIISFVGFINSGYCNIYRNIVGLVDLSLKVKKIKKLVYMGKLK
                     ERESFGEISILLQSPFTCTIITGREVEMAIIEDKDILALDPITKELMIQTAKPTFGHL
                     TEEDVKNEYIKKVQEKEWKYFKNKTIQGIFQSKGVLPGFGKWEHDWSTIPKNFKSSLI
                     TYT"
ORIGIN      
        1 tgtaagcaag gacattctgt ggtcttggcc tatcagagag gaccttgaag attcttagag
       61 gttctacttt gtggcactcc caagataagt atggtcctct aacactcaag tcatctctgt
      121 ccagctgcct tttaagatgc caagatgact gaggattctc ttccaacaga tattttggct
      181 cacatgatag ccattaacaa cgtgcctcct cctcctcttc gcagtatacc acgcctgaaa
      241 gtgcgcaaaa ccattaatta tggtcagtta aatgccttat gccacattag aggactagag
      301 agcaggcgga attcttccct ttatttggca gctcatgata cattcatcaa gcaatatcct
      361 cagatattcc tccatgaaaa aacagtattg cctaaagttc ctcaaccggt tgaaaaaaga
      421 aaatctgatc tacagataga ccagaagata tcccaacctg ttaaatcaca caatatatct
      481 ctgtatctca gtgaagcgcg tggtggtcct tgtattaatg aaggcgaact ctctgaatca
      541 aagttccaga agttcttaga tatcttaaag aagctgccag tatacagaac aatccatgaa
      601 cataactttg tgtggaagat gttgaagaat attccagctt taacctctca acttagaagt
      661 gagcatctaa aaatcctgag taagaaagtc atgtctgaaa cctggatcaa aggtagcaca
      721 gtgattggtg atgatggact ttatatcatg ctgacaggcc atgctcgacg tcgtgtaaag
      781 gtgttcagaa gtctgattga agaagaggac tcaatcgtct cttctatctc cagagaaagt
      841 tttctttttg acgtagactt aaaagattct acagtggttg agttttatgt accttcaaag
      901 aaattaacag tgaaaaagtg gggtgtcttt ggatcgctgg aagttcgacc tgacatggat
      961 gaatgtgaac gttcaattgt gacagacgac gactgtgaaa tcctgaaaat acctacaaag
     1021 gagtatgaga agttaaaatt ggaaaaagta aaacgtgaaa atgcacaaaa gttgaaatta
     1081 attcgcaagt gtccgtttta tgaaatttgg cctaccttat ccatatatga actagtttca
     1141 cttagtacat tcaaaatttt tcctccaggt catgtgttag tagaaagtgg agatatcatt
     1201 tcatttgtgg gttttatcaa ttctggatat tgtaacattt acagaaatat tgttggactc
     1261 gtggatctat cacttaaagt gaagaaaatt aaaaaacttg tttatatggg taaacttaag
     1321 gagagggagt ccttcggtga gatcagtatt cttcttcaat ctccctttac atgcacaatt
     1381 attactggac gggaagttga gatggcaatt attgaagata aggatatact cgcactggat
     1441 ccaataacca aggaacttat gattcaaaca gcaaaaccaa cttttgggca tctgacagaa
     1501 gaagacgtaa aaaatgaata tataaaaaaa gtacaagaaa aagaatggaa atatttcaag
     1561 aataagacga ttcaaggaat ctttcaaagt aaaggagttc ttcctggctt tggaaaatgg
     1621 gaacacgatt ggtcaacgat ccccaagaac tttaagagca gtcttatcac ttatacatga
     1681 tacaagtctc tttatatcca gtgcttccat ctttaatatt caattgcttt ttggccattt
     1741 tactttattt attttttgaa tagctctaaa tagttatata taaaactata tctattttat
     1801 tttctacaac agatagcaat agcccttcta atactttact atgtatcacc tctcagtata
     1861 tttgctttgt atagctaaat gatttttata ttgtcatagg tttttcattg tgagatagta
     1921 tattataaat gaaaataagt ggtatctttt atagcaatga ttgtaaaggg ctccaaagct
     1981 ttaagtaaaa tactttccta catggaaaca ctaagtagag atatttaaat aaaataccac
     2041 attttatttc cttgtacagc atatgacaat aaaaacattt tccattaaa
//
