LOCUS       NM_001172151            1546 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus CKLF-like MARVEL transmembrane domain containing
            4 (Cmtm4), mRNA.
ACCESSION   NM_001172151 XM_001057152
VERSION     NM_001172151.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Li,G., Li,G.Y., Ji,H.J., Zhao,W.J., Chu,S.F. and Chen,N.H.
  TITLE     [Effect of testosterone on the expression of CMTM family of the
            male spermatogenesis suppression rats]
  JOURNAL   Yao Xue Xue Bao 45 (8), 995-1000 (2010)
   PUBMED   21351585
  REMARK    GeneRIF: Testosterone was associated with the expression of CMTM
            family during spermatogenesis, and CMTM2 and CMTM4 may take part in
            the spermatogenesis process.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001172151.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.54930.1,
                                           SRR26643288.60489.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-302               JAXUCZ010000019.1  582642-582943
            303-479             JAXUCZ010000019.1  618145-618321
            480-578             JAXUCZ010000019.1  619600-619698
            579-1546            JAXUCZ010000019.1  621579-622546
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19p14"
     gene            1..1546
                     /gene="Cmtm4"
                     /gene_synonym="Cklfsf4; RGD1565098"
                     /note="CKLF-like MARVEL transmembrane domain containing 4"
                     /db_xref="GeneID:498902"
                     /db_xref="RGD:1565098"
     exon            1..302
                     /gene="Cmtm4"
                     /gene_synonym="Cklfsf4; RGD1565098"
                     /inference="alignment:Splign:2.1.0"
     CDS             117..743
                     /gene="Cmtm4"
                     /gene_synonym="Cklfsf4; RGD1565098"
                     /note="chemokine-like factor super family 4"
                     /codon_start=1
                     /product="CKLF-like MARVEL transmembrane domain-containing
                     protein 4"
                     /protein_id="NP_001165622.1"
                     /db_xref="GeneID:498902"
                     /db_xref="RGD:1565098"
                     /translation="MRGGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLR
                     CDPDYLRGALGRLKVAQVILALIAFICIETIMECSPCEGLYFFEFVSCSAFVVTGVLL
                     ILFSLNLHMRIPQINWSLTDLVNTGLSTFFFFIASIVLAALNHKTGAEIAAVIFGFLA
                     TAAYAVSTFLAVQKWRVSIRQQSANDYIRARTESRDVDGRPEIQRLDT"
     exon            303..479
                     /gene="Cmtm4"
                     /gene_synonym="Cklfsf4; RGD1565098"
                     /inference="alignment:Splign:2.1.0"
     exon            480..578
                     /gene="Cmtm4"
                     /gene_synonym="Cklfsf4; RGD1565098"
                     /inference="alignment:Splign:2.1.0"
     exon            579..1546
                     /gene="Cmtm4"
                     /gene_synonym="Cklfsf4; RGD1565098"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagcgggcg gcgggcgcag aggaggcggc ggggtggtct ggcgaccgcg atgcggctgc
       61 tgcgctgagc ctgcccgctc caggcgccgg gggaaccggc cgcgcggagc ggcagcatgc
      121 ggggcggcga ggagctggac ggcttcgagg gcgaggcctc gagcacctcc atgatctcgg
      181 gcgccagcag cccgtaccaa cccaccaccg agcccgtgag ccagcgccgc gggctggccg
      241 gcctgcgctg cgacccggac tacctgcgcg gcgcgcttgg ccgcctcaag gtcgcccaag
      301 tgattttagc cctaattgca tttatctgca ttgagaccat catggagtgc tccccgtgtg
      361 aaggcctcta cttctttgag tttgtaagct gcagcgcatt tgtggtgact ggggtcttgc
      421 tgattctctt cagcctcaac ctgcatatga ggatccccca gatcaactgg agtctaacag
      481 atttggtcaa cactggactc agcactttct ttttctttat tgcctcaatt gtattggctg
      541 ctttaaatca taaaaccgga gcggaaattg ctgctgtgat atttggcttc ttggcaacag
      601 cagcctatgc agtcagcacg ttcctggctg tgcagaaatg gagagtcagc atccgccagc
      661 agagcgccaa tgactacatc cgagctcgca ccgagtctag agatgtggac ggccgtcctg
      721 agatccagcg cctggacaca tgagaccgtc tggagccctc ccgctgccct ctgcccattc
      781 ttctaatcaa attttctttc tcttagcacg tcagattttt gtgtgaacca gctgaatttt
      841 gtcctgtttg gtaaaaattc actttgggaa aggttgccta gagtggccca gtgactgatc
      901 tgttgggcat tgggtgcccg tgggagcagc caactttatt gagtgctcta ggtcttaact
      961 gtctgtctca gaacgcatgg tctcacctga ctctgagcca ccctttcgtg tgtatttgca
     1021 atgagtcaga gccttattaa atggcattga gaagggaatt atatgtcaca agacggaaag
     1081 aagcacaggg gtgggacagc cagtgaggta cttggacagc cttctagcca actggggtgc
     1141 gtgttgagtc tgttagatcc accctccctg tgttctgttc ccagagcatc tgggcagcca
     1201 gcatggcctg agggggactc tgaggggtct gatggatgga tgtgttcctg taacttcctt
     1261 accaggcttg tatgctacag ggataggaaa agctagtgtc ctgtggggac agctccgtgg
     1321 actgactccc agagcagtga ccatttgtct cctgccctgc tgagaaatca cttgattctt
     1381 cctcatgtga attgccttcc tgtggtccat acttactttc cgggagaggg ggctattaca
     1441 tgtgccgggg tcctcctacc ttacatatca tggggctgaa ttgcagtttt ggcaactttt
     1501 accttctcag gtgaaagcgc agaagaaaca gtcctccatt agcccg
//
