LOCUS       NM_001013866            1181 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus cms1 ribosomal small subunit homolog (Cmss1),
            mRNA.
ACCESSION   NM_001013866 XM_213638
VERSION     NM_001013866.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC089826.1.
            
            On Apr 20, 2005 this sequence version replaced XM_213638.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089826.1, FQ219915.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q12"
     gene            1..1181
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /note="cms1 ribosomal small subunit homolog"
                     /db_xref="GeneID:288176"
                     /db_xref="RGD:1309437"
     exon            1..187
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..957
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /note="uncharacterized protein C3orf26 homolog"
                     /codon_start=1
                     /product="protein CMSS1"
                     /protein_id="NP_001013888.1"
                     /db_xref="GeneID:288176"
                     /db_xref="RGD:1309437"
                     /translation="MADDLGDEWWENQPATAGSPELSGGEEGGDTEMTQKDTVPVPEK
                     TKQPTECFLSQVKEPKTEDSRKSRKWKKKKISDILAKSEPKPGTPEDLQKLIKGHYSS
                     SRSVIELEELHLPDSCFLKCNDLTHSLSSYLKEICPKWVKLRKTHNEKKSVLMLILCS
                     SAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRAIHLGVGTPGRIKELVK
                     QDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSDSLKLGLF
                     "
     exon            188..267
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     exon            268..342
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     exon            343..472
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     exon            473..532
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     exon            533..635
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     exon            636..696
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     exon            697..784
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     exon            785..873
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
     exon            874..1153
                     /gene="Cmss1"
                     /gene_synonym="RGD1309437"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaagaccgcg ttccttggtt tttcctcgtg cagcgttgct aacgcggact ctgaagctga
       61 tcccagcggt gcagcgggcc gctttgcatt catctggttg tcagctcgcg tccgggtctc
      121 acggagatgg cagacgatct gggagacgag tggtgggaga accagccggc cacggccggc
      181 agcccagagc tgtcaggtgg agaggaagga ggagacacgg aaatgacaca gaaggacaca
      241 gttccggttc ctgagaaaac caaacagccc actgagtgtt tcctgtcaca ggtgaaggaa
      301 ccaaaaacag aggactcccg gaagagcagg aagtggaaga agaagaaaat ttctgatatt
      361 cttgcaaaat cagagcccaa accagggacc cctgaagacc ttcagaagct gatcaagggc
      421 cattacagca gcagccgttc tgtgattgaa ttagaggaac tgcacctacc agactcctgc
      481 ttcctcaagt gcaatgactt gactcacagt ctctcttcat acctaaaaga aatctgccct
      541 aagtgggtaa aacttcggaa aacccacaat gagaaaaagt cggtcctgat gctgatcctg
      601 tgcagctccg ctgtccgggc cctggagctt atcaggtctc tgacagcatt caaaggagat
      661 gccaaagtta tgaaattatt tgcaaaacac ataaaggtcc aggagcaggt gaagttgctg
      721 gagaagcgag cgatacacct gggcgtgggg actccaggga gaatcaaaga acttgtcaaa
      781 caagatggcc ttaatttgaa ccccttaaag tttctggttt ttgactggaa ctggagagat
      841 cagaagctga ggagaatgat ggacattccc gagataagaa aggaggtttt tgagcttcta
      901 gatatgggag tgttcagcct atgcaaatcg gactccttga agctgggcct tttctgagcc
      961 agggtcctga tggagagtcc agttgccgac atattgcaaa tactcagaat atcctactct
     1021 gtcgtagtta tgttaacttc atcgcccagt ggatcactga agatgcttca tgaggatgct
     1081 ttgacaactg tgggcctgtc ctttggctcg taccctcaga taataaagct ctgcctgtgt
     1141 atgttgtctt gttaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//
