LOCUS       NM_001199225             676 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus C-x(9)-C motif containing 1 (Cmc1), transcript
            variant 1, mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001199225
VERSION     NM_001199225.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Fischer,M., Horn,S., Belkacemi,A., Kojer,K., Petrungaro,C.,
            Habich,M., Ali,M., Kuttner,V., Bien,M., Kauff,F., Dengjel,J.,
            Herrmann,J.M. and Riemer,J.
  TITLE     Protein import and oxidative folding in the mitochondrial
            intermembrane space of intact mammalian cells
  JOURNAL   Mol Biol Cell 24 (14), 2160-2170 (2013)
   PUBMED   23676665
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF112427.1, FQ099582.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840127 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               JAXUCZ010000008.1  126735385-126735563 c
            180-269             JAXUCZ010000008.1  126714578-126714667 c
            270-360             JAXUCZ010000008.1  126684324-126684414 c
            361-676             JAXUCZ010000008.1  126677560-126677875 c
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..676
                     /gene="Cmc1"
                     /gene_synonym="RGD1305283"
                     /note="C-x(9)-C motif containing 1"
                     /db_xref="GeneID:363162"
                     /db_xref="RGD:1305283"
     exon            1..179
                     /gene="Cmc1"
                     /gene_synonym="RGD1305283"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..481
                     /gene="Cmc1"
                     /gene_synonym="RGD1305283"
                     /note="isoform 1 is encoded by transcript variant 1; COX
                     assembly mitochondrial protein 1"
                     /codon_start=1
                     /product="COX assembly mitochondrial protein homolog
                     isoform 1"
                     /protein_id="NP_001186154.1"
                     /db_xref="GeneID:363162"
                     /db_xref="RGD:1305283"
                     /translation="MALDPAEQHLRHVEKDVLIPKIMREKARERCSEQVEDFTRCCKD
                     SGILMVLKCRKENSALKDCLTAYYNDPAFYEECKLEYLKEREEFRRTGVPTKKRLQKL
                     PTSM"
     exon            180..269
                     /gene="Cmc1"
                     /gene_synonym="RGD1305283"
                     /inference="alignment:Splign:2.1.0"
     exon            270..360
                     /gene="Cmc1"
                     /gene_synonym="RGD1305283"
                     /inference="alignment:Splign:2.1.0"
     exon            361..676
                     /gene="Cmc1"
                     /gene_synonym="RGD1305283"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggaaggggg tgtggtctgt tctcacagcg gaggtcgcgc acccgctctc ctgcgggaag
       61 ctgcgggcgg gcgagcggct gcgcgcgcag tccagcttag gctcctcccc gtcccggctc
      121 cagagccggc gagtggcttg ctgcttctcc gccctccgag atggcgctgg accccgcaga
      181 gcagcatctc cgacatgttg agaaagatgt cctgatccca aagataatga gagagaaggc
      241 cagggaaagg tgttctgaac aagttgaaga ttttaccaga tgttgcaagg actccgggat
      301 ccttatggta ttaaaatgcc gtaaagagaa ttctgcgctg aaagactgtc taactgctta
      361 ctataatgat ccagccttct atgaagaatg caaactggag tatctcaagg aaagggaaga
      421 attcagaaga actggagttc ctaccaagaa aaggctccag aagcttccca caagcatgta
      481 ggcaaacagt gagtcagacg tcccatcatg gaagccatct gtagtgtcaa tcaaacgatg
      541 gactggaaca acgttgctca tcctaatcat gaaaacattc atttttttta atgaaataaa
      601 aacatttatt tcagagttct ggcttattaa atatgggatg gggaaaataa ataaagtttt
      661 cctggcctta acccaa
//
