LOCUS       NM_001106930            1198 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus calaxin (Clxn), mRNA.
ACCESSION   NM_001106930 XM_001065878 XM_229459
VERSION     NM_001106930.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1198)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473999.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001065878.1, XM_229459.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM069200.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132301,
                                           SAMD00132302 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..1198
                     /gene="Clxn"
                     /gene_synonym="Efcab1"
                     /note="calaxin"
                     /db_xref="GeneID:301957"
                     /db_xref="RGD:1594548"
     exon            1..180
                     /gene="Clxn"
                     /gene_synonym="Efcab1"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..761
                     /gene="Clxn"
                     /gene_synonym="Efcab1"
                     /note="EF-hand calcium-binding domain-containing protein
                     1; EF hand calcium binding domain 1"
                     /codon_start=1
                     /product="calaxin"
                     /protein_id="NP_001100400.1"
                     /db_xref="GeneID:301957"
                     /db_xref="RGD:1594548"
                     /translation="MNRKKLQKLTDTLTKSCKHFNKFEVKCLITLFYNLVGDVPEKPG
                     VVTGLDRNVFRNILHVTFGMTDDMIMDRVFRGFDRDNDGCISVSEWVHGLSLFLRGTL
                     DEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSEEDPDEGIKDLVEITLKKMDH
                     DHDGKLSFVDYETAVREETLLLEAFGPCLPDPKRQMEFEAQVFKDPNEFNET"
     exon            181..339
                     /gene="Clxn"
                     /gene_synonym="Efcab1"
                     /inference="alignment:Splign:2.1.0"
     exon            340..444
                     /gene="Clxn"
                     /gene_synonym="Efcab1"
                     /inference="alignment:Splign:2.1.0"
     exon            445..596
                     /gene="Clxn"
                     /gene_synonym="Efcab1"
                     /inference="alignment:Splign:2.1.0"
     exon            597..701
                     /gene="Clxn"
                     /gene_synonym="Efcab1"
                     /inference="alignment:Splign:2.1.0"
     exon            702..1198
                     /gene="Clxn"
                     /gene_synonym="Efcab1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgcaaaag ctcagagcca tctggctaca ccaggctccc tcggcctggc gctccggagc
       61 cggagcgtcc tggcactatg ctctggatga cacactaaaa tctaattttc ttaacaccga
      121 tcatgaaccg aaagaaactg cagaagttga cggacacctt aactaaaagt tgcaagcact
      181 ttaataaatt tgaagtaaaa tgtcttataa cacttttcta taatttggtg ggagatgtgc
      241 cagagaagcc aggagtagtc actggactag atcgtaatgt atttcggaac atcttgcatg
      301 tgacatttgg aatgacagat gacatgatca tggacagagt atttcgaggt tttgatagag
      361 acaacgatgg ctgtataagc gtatcagagt gggttcatgg attatcactg tttcttcgag
      421 ggactttaga tgaaaagatg aaatattgct ttgaagtgtt tgatctgaat ggtgatggct
      481 tcatttcaaa ggaggagatg ttccacatgc tgaagaacag ccttctcaag cagccctctg
      541 aggaggaccc tgatgaaggg attaaggatt tggttgaaat aacacttaag aaaatggacc
      601 atgaccatga tgggaagctg tcttttgtag actatgagac ggctgtgaga gaagagactc
      661 tccttctgga agcatttggg ccatgcctac ctgatccaaa gaggcagatg gaatttgaag
      721 cccaagtatt caaagatccc aatgaattta atgaaacgtg aattcctaaa tgtattgtac
      781 aaaaggagcc acattaagtt catcagttct tctcagctta gaagatgcta tggtgagatt
      841 cagttgactt gtatgtattt tagattagga catcctcaca gacactaggt ttggaaagaa
      901 aggttaacat tgataaagct atttcaccac atggactctg tgaagacaca tacctgttat
      961 aaagctccag attaattaaa gcaatgaaga aattgtatag ttattactta ggaatgcaac
     1021 ttcatatcag agggattttg attgcacatc gaaatattgt tgaagctaca tagcattttt
     1081 cttcctagca ttaagtagta ttgtacaaaa aagaatagta gtagtaccaa aaaaagtaga
     1141 tgccaggtac tgggtactgt acagcaaggt ggactcatgg aaactattta atatactg
//
